RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 A0A1W2PNM2 257 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 TMEM256-PLSCR3K7ERE1 68 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 K7ERS5 55 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 MT1HL1P0DM35 61 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 INAFM2P0DMQ5 153 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 RPL37AP61513 92 aaKnown RBP1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 Q5VSD8 79 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 Q6ZRX8 168 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 C20orf197Q8N268 126 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 DIRC1Q969H9 104 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 OBSCN-AS1Q96MR7 158 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 SPRR4Q96PI1 79 aa1.33□□□□□ -2.2
LIMCH1-212ENST00000511424 DMBT1Q9UGM3 2413 aaPredicted RBP1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 A0A087WVE0 104 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 TRBV7-4A0A0J9YYF1 115 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 A8MUN3 132 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 RBM3P98179 157 aaKnown RBP1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 C7orf65Q6ZTY9 151 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 LCA10Q71F78 164 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 C1orf64Q8NEQ6 169 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 RETNLBQ9BQ08 111 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 C14orf132Q9NPU4 83 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 HMCN2Q8NDA2 5059 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 MUC17Q685J3 4493 aa1.32□□□□□ -2.2
LIMCH1-212ENST00000511424 hDV103S1A0JD37 113 aa1.31□□□□□ -2.2
LIMCH1-212ENST00000511424 F8WEM9 126 aa1.31□□□□□ -2.2
LIMCH1-212ENST00000511424 H3BQ85 93 aa1.31□□□□□ -2.2
LIMCH1-212ENST00000511424 KRTAP25-1Q3LHN0 102 aa1.31□□□□□ -2.2
LIMCH1-212ENST00000511424 IGLV5-48A0A075B6I7 105 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 IGKV3D-7A0A0C4DH55 119 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 H0YGX0 51 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 DNAL4O96015 105 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 COX6CP09669 75 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 ATP11AUNQ6ZP68 121 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 LINC00304Q8N9R0 145 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 LINC00846Q9NV44 126 aa1.3□□□□□ -2.2
LIMCH1-212ENST00000511424 TRAV22A0A0B4J277 110 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 SPRR1BP22528 89 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 Q5VV11 94 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 Q6ZQT0 140 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 Q96NJ1 140 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 ORMDL1Q9P0S3 153 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 R4GN34 69 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 UBR4Q5T4S7 5183 aa1.29□□□□□ -2.2
LIMCH1-212ENST00000511424 A0A087WSZ3 146 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 ASB16-AS1Q495Z4 193 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 LINC01554Q52M75 96 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 SPINK6Q6UWN8 80 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 TMEM254Q8TBM7 123 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 CYP4F30PQ9H0H9 118 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 SNURFQ9Y675 71 aa1.28□□□□□ -2.2
LIMCH1-212ENST00000511424 LOC101927531A0A1B0GV80 90 aa1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 C9orf92A6NGG3 77 aa1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 HRES1P13985 223 aa1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 NREPQ16612 68 aa1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 ZCCHC13Q8WW36 166 aaKnown RBP1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 KRTAP4-1Q9BYQ7 146 aa1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 CDC42SE1Q9NRR8 79 aa1.27□□□□□ -2.21
LIMCH1-212ENST00000511424 HCG22E2RYF7 251 aa1.26□□□□□ -2.21
LIMCH1-212ENST00000511424 LINC00472Q9H8W2 130 aa1.26□□□□□ -2.21
LIMCH1-212ENST00000511424 RNF213Q63HN8 5207 aa1.26□□□□□ -2.21
LIMCH1-212ENST00000511424 LOC110117498A0A087WWA1 95 aa1.25□□□□□ -2.21
LIMCH1-212ENST00000511424 K7EQZ3 153 aa1.25□□□□□ -2.21
LIMCH1-212ENST00000511424 P0C880 135 aa1.25□□□□□ -2.21
LIMCH1-212ENST00000511424 LIMD2Q9BT23 127 aa1.25□□□□□ -2.21
LIMCH1-212ENST00000511424 A0A1B0GU33 70 aa1.24□□□□□ -2.21
LIMCH1-212ENST00000511424 JMJD7-PLA2G4BH0Y9G9 81 aa1.24□□□□□ -2.21
LIMCH1-212ENST00000511424 SSBP3-AS1Q7Z2R9 100 aa1.24□□□□□ -2.21
LIMCH1-212ENST00000511424 WFDC13Q8IUB5 93 aa1.24□□□□□ -2.21
LIMCH1-212ENST00000511424 UBL5Q9BZL1 73 aa1.24□□□□□ -2.21
LIMCH1-212ENST00000511424 MUC2Q02817 5179 aa1.23□□□□□ -2.21
LIMCH1-212ENST00000511424 CHKB-CPT1BH3BT56 60 aa1.23□□□□□ -2.21
LIMCH1-212ENST00000511424 PDE6GP18545 87 aa1.23□□□□□ -2.21
LIMCH1-212ENST00000511424 SPTSSBQ8NFR3 76 aa1.23□□□□□ -2.21
LIMCH1-212ENST00000511424 FAT4Q6V0I7 4981 aa1.23□□□□□ -2.21
LIMCH1-212ENST00000511424 MMP24-AS1A0A0U1RRL7 71 aa1.22□□□□□ -2.21
LIMCH1-212ENST00000511424 KRTAP12-3P60328 96 aa1.22□□□□□ -2.21
LIMCH1-212ENST00000511424 CASC2Q6XLA1 102 aa1.22□□□□□ -2.21
LIMCH1-212ENST00000511424 PRR15LQ9BU68 103 aa1.22□□□□□ -2.21
LIMCH1-212ENST00000511424 NDUFB1O75438 58 aa1.21□□□□□ -2.22
LIMCH1-212ENST00000511424 LINC01558Q9Y6Z2 57 aa1.21□□□□□ -2.22
LIMCH1-212ENST00000511424 A0A1B0GW54 56 aa1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 SPINK1P00995 79 aa1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 KRTAP12-4P60329 112 aa1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 ROMO1P60602 79 aa1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 PCOTHQ58A44 107 aa1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 LINC00208Q96KT6 92 aa1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 FLGP20930 4061 aaPredicted RBP1.2□□□□□ -2.22
LIMCH1-212ENST00000511424 KRTAP19-2Q3LHN2 52 aa1.19□□□□□ -2.22
LIMCH1-212ENST00000511424 H3BPC8 53 aa1.18□□□□□ -2.22
LIMCH1-212ENST00000511424 SPINK7P58062 85 aa1.18□□□□□ -2.22
LIMCH1-212ENST00000511424 SPAG11AQ6PDA7 123 aa1.18□□□□□ -2.22
LIMCH1-212ENST00000511424 HMCN1Q96RW7 5635 aa1.18□□□□□ -2.22
LIMCH1-212ENST00000511424 H0Y9P7 68 aa1.17□□□□□ -2.22
LIMCH1-212ENST00000511424 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
LIMCH1-212ENST00000511424 CSAG1Q6PB30 78 aa1.17□□□□□ -2.22
LIMCH1-212ENST00000511424 COA5Q86WW8 74 aa1.17□□□□□ -2.22
LIMCH1-212ENST00000511424 C20orf166-AS1Q96NR2 134 aa1.17□□□□□ -2.22
LIMCH1-212ENST00000511424 MRPL34Q9BQ48 92 aaKnown RBP1.17□□□□□ -2.22
LIMCH1-212ENST00000511424 RPL37P61927 97 aaKnown RBP1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms