RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 AEBP2Q6ZN18 517 aaPredicted RBP15.62■□□□□ 0.09
LIMCH1-212ENST00000511424 CHIC1Q5VXU3 224 aa15.12■□□□□ 0.01
LIMCH1-212ENST00000511424 SENP3Q9H4L4 574 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-212ENST00000511424 PHF23Q9BUL5 403 aaPredicted RBP13.24□□□□□ -0.29
LIMCH1-212ENST00000511424 FOXD1Q16676 465 aa12.38□□□□□ -0.43
LIMCH1-212ENST00000511424 PLPPR3Q6T4P5 718 aa12.26□□□□□ -0.45
LIMCH1-212ENST00000511424 ADRA2BP18089 450 aa11.79□□□□□ -0.52
LIMCH1-212ENST00000511424 PPP6R1Q9UPN7 881 aa11.77□□□□□ -0.53
LIMCH1-212ENST00000511424 PIAS4Q8N2W9 510 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-212ENST00000511424 MSH5O43196 834 aa11.54□□□□□ -0.56
LIMCH1-212ENST00000511424 SCAF1Q9H7N4 1312 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-212ENST00000511424 POTEDQ86YR6 584 aa10.78□□□□□ -0.68
LIMCH1-212ENST00000511424 PPP4R3CPQ6ZMV5 832 aa10.77□□□□□ -0.69
LIMCH1-212ENST00000511424 MAPK8IP2Q13387 824 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-212ENST00000511424 DMRT2Q9Y5R5 561 aa10.6□□□□□ -0.71
LIMCH1-212ENST00000511424 CNKSR2Q8WXI2 1034 aa10.51□□□□□ -0.73
LIMCH1-212ENST00000511424 NCBP3Q53F19 620 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-212ENST00000511424 DCAF8L1A6NGE4 600 aa10.34□□□□□ -0.75
LIMCH1-212ENST00000511424 KCNA4P22459 653 aa10.32□□□□□ -0.76
LIMCH1-212ENST00000511424 RNF216Q9NWF9 866 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-212ENST00000511424 HOXD11P31277 338 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-212ENST00000511424 NPM3O75607 178 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-212ENST00000511424 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMCH1-212ENST00000511424 DNAJC5BQ9UF47 199 aa9.85□□□□□ -0.83
LIMCH1-212ENST00000511424 SLC4A1APQ9BWU0 796 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-212ENST00000511424 RNF39Q9H2S5 420 aa9.82□□□□□ -0.84
LIMCH1-212ENST00000511424 CACNB1Q02641 598 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-212ENST00000511424 C1QBPQ07021 282 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-212ENST00000511424 SLC4A2P04920 1241 aa9.69□□□□□ -0.86
LIMCH1-212ENST00000511424 U3KPZ7 1027 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-212ENST00000511424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-212ENST00000511424 HNRNPUL2Q1KMD3 747 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-212ENST00000511424 FOXD4L1Q9NU39 408 aa9.56□□□□□ -0.88
LIMCH1-212ENST00000511424 CAPN15O75808 1086 aa9.53□□□□□ -0.88
LIMCH1-212ENST00000511424 MYCNP04198 464 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-212ENST00000511424 APLP2Q06481 763 aa9.52□□□□□ -0.89
LIMCH1-212ENST00000511424 SAMD1Q6SPF0 538 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-212ENST00000511424 SPINK5Q9NQ38 1064 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-212ENST00000511424 ZBTB22O15209 634 aa9.44□□□□□ -0.9
LIMCH1-212ENST00000511424 TRHP20396 242 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-212ENST00000511424 EHMT2Q96KQ7 1210 aa9.42□□□□□ -0.9
LIMCH1-212ENST00000511424 ZNF219Q9P2Y4 722 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-212ENST00000511424 ABCB7O75027 752 aa9.31□□□□□ -0.92
LIMCH1-212ENST00000511424 DSG3P32926 999 aa9.29□□□□□ -0.92
LIMCH1-212ENST00000511424 CSRNP3Q8WYN3 585 aa9.27□□□□□ -0.93
LIMCH1-212ENST00000511424 ATF5Q9Y2D1 282 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-212ENST00000511424 ATXN8OSP0DMR3 200 aa9.21□□□□□ -0.94
LIMCH1-212ENST00000511424 POLA2Q14181 598 aa9.2□□□□□ -0.94
LIMCH1-212ENST00000511424 ZBTB12Q9Y330 459 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-212ENST00000511424 FBLN2P98095 1184 aa8.97□□□□□ -0.97
LIMCH1-212ENST00000511424 RBM42Q9BTD8 480 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-212ENST00000511424 OSCARQ8IYS5 282 aa8.88□□□□□ -0.99
LIMCH1-212ENST00000511424 MKRN4PQ13434 485 aaPredicted RBP8.8□□□□□ -1
LIMCH1-212ENST00000511424 SPDYE2BA6NHP3 402 aa8.75□□□□□ -1.01
LIMCH1-212ENST00000511424 SPDYE6P0CI01 402 aa8.75□□□□□ -1.01
LIMCH1-212ENST00000511424 SPDYE2Q495Y8 402 aa8.75□□□□□ -1.01
LIMCH1-212ENST00000511424 ZNF692Q9BU19 519 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-212ENST00000511424 AKT1S1Q96B36 256 aa8.74□□□□□ -1.01
LIMCH1-212ENST00000511424 REM2Q8IYK8 340 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-212ENST00000511424 SPDYE4A6NLX3 237 aa8.62□□□□□ -1.03
LIMCH1-212ENST00000511424 CHRDL2Q6WN34 429 aa8.61□□□□□ -1.03
LIMCH1-212ENST00000511424 PABPN1Q86U42 306 aaKnown RBP eCLIP8.61□□□□□ -1.03
LIMCH1-212ENST00000511424 CLEC11AQ9Y240 323 aa8.61□□□□□ -1.03
LIMCH1-212ENST00000511424 SSUH2Q9Y2M2 353 aa8.61□□□□□ -1.03
LIMCH1-212ENST00000511424 PITPNM1O00562 1244 aa8.57□□□□□ -1.04
LIMCH1-212ENST00000511424 SPDYE1Q8NFV5 336 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-212ENST00000511424 POTEHQ6S545 545 aa8.53□□□□□ -1.04
LIMCH1-212ENST00000511424 FKBP8Q14318 412 aa8.48□□□□□ -1.05
LIMCH1-212ENST00000511424 PRR29P0C7W0 189 aa8.47□□□□□ -1.05
LIMCH1-212ENST00000511424 PIP4P2Q8N4L2 257 aa8.44□□□□□ -1.06
LIMCH1-212ENST00000511424 STAG3Q9UJ98 1225 aa8.43□□□□□ -1.06
LIMCH1-212ENST00000511424 FXR2P51116 673 aaKnown RBP eCLIP8.4□□□□□ -1.06
LIMCH1-212ENST00000511424 PRKAR2AP13861 404 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-212ENST00000511424 CHADLQ6NUI6 762 aa8.35□□□□□ -1.07
LIMCH1-212ENST00000511424 HAX1O00165 279 aa8.31□□□□□ -1.08
LIMCH1-212ENST00000511424 PROM2Q8N271 834 aa8.3□□□□□ -1.08
LIMCH1-212ENST00000511424 PLEKHG5O94827 1062 aa8.27□□□□□ -1.09
LIMCH1-212ENST00000511424 MIER1Q8N108 512 aa8.25□□□□□ -1.09
LIMCH1-212ENST00000511424 PLCD3Q8N3E9 789 aa8.23□□□□□ -1.09
LIMCH1-212ENST00000511424 FBXO3Q9UK99 471 aa8.23□□□□□ -1.09
LIMCH1-212ENST00000511424 FARP1Q9Y4F1 1045 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-212ENST00000511424 CREBZFQ9NS37 354 aa8.22□□□□□ -1.09
LIMCH1-212ENST00000511424 NPM1P06748 294 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMCH1-212ENST00000511424 CD44P16070 742 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-212ENST00000511424 PAK3O75914 559 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-212ENST00000511424 C19orf67A6NJJ6 358 aa8.12□□□□□ -1.11
LIMCH1-212ENST00000511424 SP7Q8TDD2 431 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-212ENST00000511424 ZBTB47Q9UFB7 747 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-212ENST00000511424 EVX2Q03828 476 aa8.1□□□□□ -1.11
LIMCH1-212ENST00000511424 KLHL34Q8N239 644 aa8.1□□□□□ -1.11
LIMCH1-212ENST00000511424 ZRANB1Q9UGI0 708 aa8.09□□□□□ -1.11
LIMCH1-212ENST00000511424 VASPP50552 380 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-212ENST00000511424 MNX1P50219 401 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-212ENST00000511424 TSPYL2Q9H2G4 693 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-212ENST00000511424 GABBR2O75899 941 aa7.97□□□□□ -1.13
LIMCH1-212ENST00000511424 RASEFQ8IZ41 740 aa7.97□□□□□ -1.13
LIMCH1-212ENST00000511424 FAM212AQ96EL1 285 aa7.97□□□□□ -1.13
LIMCH1-212ENST00000511424 DCAF8Q5TAQ9 597 aa7.96□□□□□ -1.14
LIMCH1-212ENST00000511424 ZNF579Q8NAF0 562 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-212ENST00000511424 PHF12Q96QT6 1004 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms