RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 HERC2O95714 4834 aa5.39□□□□□ -1.55
USP53-207ENST00000510852 IGLV5-48A0A075B6I7 105 aa5.38□□□□□ -1.55
USP53-207ENST00000510852 SPINK6Q6UWN8 80 aa5.38□□□□□ -1.55
USP53-207ENST00000510852 ANAPC11Q9NYG5 84 aa5.35□□□□□ -1.55
USP53-207ENST00000510852 SPRR1BP22528 89 aa5.35□□□□□ -1.55
USP53-207ENST00000510852 HRES1P13985 223 aa5.34□□□□□ -1.55
USP53-207ENST00000510852 FAT3Q8TDW7 4589 aa5.34□□□□□ -1.56
USP53-207ENST00000510852 KRTAP1-4P0C5Y4 121 aa5.33□□□□□ -1.56
USP53-207ENST00000510852 LRP1Q07954 4544 aaKnown RBP5.32□□□□□ -1.56
USP53-207ENST00000510852 ABCA13Q86UQ4 5058 aa5.3□□□□□ -1.56
USP53-207ENST00000510852 KRTAP4-5Q9BYR2 181 aa5.3□□□□□ -1.56
USP53-207ENST00000510852 MYCBP2O75592 4640 aa5.29□□□□□ -1.56
USP53-207ENST00000510852 TNXBP22105 4242 aa5.29□□□□□ -1.56
USP53-207ENST00000510852 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
USP53-207ENST00000510852 ACYP2P14621 99 aa5.28□□□□□ -1.56
USP53-207ENST00000510852 KRTAP13-2Q52LG2 175 aa5.27□□□□□ -1.57
USP53-207ENST00000510852 Q8N9L7 120 aa5.27□□□□□ -1.57
USP53-207ENST00000510852 XP32Q5T750 250 aa5.27□□□□□ -1.57
USP53-207ENST00000510852 IGFL1Q6UW32 110 aa5.25□□□□□ -1.57
USP53-207ENST00000510852 FLG2Q5D862 2391 aaPredicted RBP5.24□□□□□ -1.57
USP53-207ENST00000510852 SSBP3-AS1Q7Z2R9 100 aa5.24□□□□□ -1.57
USP53-207ENST00000510852 KRTAP10-8P60410 259 aa5.2□□□□□ -1.58
USP53-207ENST00000510852 PCLOQ9Y6V0 5065 aa5.18□□□□□ -1.58
USP53-207ENST00000510852 IGKV2-30P06310 120 aa5.17□□□□□ -1.58
USP53-207ENST00000510852 MT1HL1P0DM35 61 aa5.17□□□□□ -1.58
USP53-207ENST00000510852 KRTAP29-1A8MX34 341 aaPredicted RBP5.16□□□□□ -1.58
USP53-207ENST00000510852 KRTAP9-2Q9BYQ4 174 aa5.15□□□□□ -1.59
USP53-207ENST00000510852 SPINK1P00995 79 aa5.14□□□□□ -1.59
USP53-207ENST00000510852 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.14□□□□□ -1.59
USP53-207ENST00000510852 KRTAP9-6A0A140TA67 174 aa5.12□□□□□ -1.59
USP53-207ENST00000510852 RPS29P62273 56 aaKnown RBP5.11□□□□□ -1.59
USP53-207ENST00000510852 DMBT1Q9UGM3 2413 aaPredicted RBP5.1□□□□□ -1.59
USP53-207ENST00000510852 CRIPTQ9P021 101 aa5.06□□□□□ -1.6
USP53-207ENST00000510852 HERC1Q15751 4861 aa5.04□□□□□ -1.6
USP53-207ENST00000510852 INE1O15225 51 aa5.04□□□□□ -1.6
USP53-207ENST00000510852 IGKV2D-30A0A075B6S6 120 aa5.01□□□□□ -1.61
USP53-207ENST00000510852 DSCR10P59022 87 aa5.01□□□□□ -1.61
USP53-207ENST00000510852 LCE3BQ5TA77 95 aa5□□□□□ -1.61
USP53-207ENST00000510852 K7EQZ3 153 aa4.97□□□□□ -1.61
USP53-207ENST00000510852 PLAC4Q8WY50 150 aa4.97□□□□□ -1.61
USP53-207ENST00000510852 HMCN2Q8NDA2 5059 aa4.96□□□□□ -1.62
USP53-207ENST00000510852 LPAP08519 4548 aa4.94□□□□□ -1.62
USP53-207ENST00000510852 KRTAP4-12Q9BQ66 201 aa4.93□□□□□ -1.62
USP53-207ENST00000510852 C9orf92A6NGG3 77 aa4.92□□□□□ -1.62
USP53-207ENST00000510852 KRTAP4-8A0A0G2JLE6 195 aa4.91□□□□□ -1.62
USP53-207ENST00000510852 MMP24-AS1A0A0U1RRL7 71 aa4.91□□□□□ -1.62
USP53-207ENST00000510852 KRTAP13-3Q3SY46 172 aa4.91□□□□□ -1.62
USP53-207ENST00000510852 WFDC13Q8IUB5 93 aa4.89□□□□□ -1.63
USP53-207ENST00000510852 KRTAP9-9Q9BYP9 154 aa4.88□□□□□ -1.63
USP53-207ENST00000510852 KRTAP9-4Q9BYQ2 154 aa4.88□□□□□ -1.63
USP53-207ENST00000510852 LRP2P98164 4655 aa4.88□□□□□ -1.63
USP53-207ENST00000510852 PCOTHQ58A44 107 aa4.87□□□□□ -1.63
USP53-207ENST00000510852 MRPL34Q9BQ48 92 aaKnown RBP4.85□□□□□ -1.63
USP53-207ENST00000510852 MUC17Q685J3 4493 aa4.81□□□□□ -1.64
USP53-207ENST00000510852 RPL37P61927 97 aaKnown RBP4.8□□□□□ -1.64
USP53-207ENST00000510852 H0YAA0 97 aa4.78□□□□□ -1.64
USP53-207ENST00000510852 KRTAP4-7Q9BYR0 210 aa4.77□□□□□ -1.65
USP53-207ENST00000510852 TP53AIP1Q9HCN2 124 aa4.77□□□□□ -1.65
USP53-207ENST00000510852 KRTAP12-2P59991 146 aa4.73□□□□□ -1.65
USP53-207ENST00000510852 UBR4Q5T4S7 5183 aa4.73□□□□□ -1.65
USP53-207ENST00000510852 KRTAP19-1Q8IUB9 90 aa4.72□□□□□ -1.65
USP53-207ENST00000510852 C10orf95Q9H7T3 257 aa4.71□□□□□ -1.66
USP53-207ENST00000510852 LCE1DQ5T752 114 aa4.7□□□□□ -1.66
USP53-207ENST00000510852 RNF213Q63HN8 5207 aa4.69□□□□□ -1.66
USP53-207ENST00000510852 PP632Q6XCG6 107 aa4.67□□□□□ -1.66
USP53-207ENST00000510852 MUC2Q02817 5179 aa4.67□□□□□ -1.66
USP53-207ENST00000510852 KRTAP4-1Q9BYQ7 146 aa4.64□□□□□ -1.67
USP53-207ENST00000510852 LCE5AQ5TCM9 118 aa4.64□□□□□ -1.67
USP53-207ENST00000510852 KRTAP4-9Q9BYQ8 210 aa4.61□□□□□ -1.67
USP53-207ENST00000510852 COX6B2Q6YFQ2 88 aa4.56□□□□□ -1.68
USP53-207ENST00000510852 KRTAP19-4Q3LI73 84 aa4.55□□□□□ -1.68
USP53-207ENST00000510852 KRTAP4-2Q9BYR5 136 aa4.54□□□□□ -1.68
USP53-207ENST00000510852 FAT4Q6V0I7 4981 aa4.51□□□□□ -1.69
USP53-207ENST00000510852 KRTAP2-2Q9BYT5 123 aa4.51□□□□□ -1.69
USP53-207ENST00000510852 FLGP20930 4061 aaPredicted RBP4.49□□□□□ -1.69
USP53-207ENST00000510852 KRTAP19-2Q3LHN2 52 aa4.49□□□□□ -1.69
USP53-207ENST00000510852 H1FX-AS1Q4G0G2 97 aa4.47□□□□□ -1.69
USP53-207ENST00000510852 S4R3F8 94 aa4.37□□□□□ -1.71
USP53-207ENST00000510852 KRTAP13-4Q3LI77 160 aa4.37□□□□□ -1.71
USP53-207ENST00000510852 KRTAP4-11Q9BYQ6 195 aa4.37□□□□□ -1.71
USP53-207ENST00000510852 MT1HP80294 61 aa4.36□□□□□ -1.71
USP53-207ENST00000510852 M0R2T5 61 aa4.31□□□□□ -1.72
USP53-207ENST00000510852 SPRR5A0A1B0GTR4 108 aa4.27□□□□□ -1.73
USP53-207ENST00000510852 KRTAP5-3Q6L8H2 238 aa4.26□□□□□ -1.73
USP53-207ENST00000510852 KRTAP10-6P60371 365 aaPredicted RBP4.23□□□□□ -1.73
USP53-207ENST00000510852 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
USP53-207ENST00000510852 KRTAP9-8Q9BYQ0 159 aa4.19□□□□□ -1.74
USP53-207ENST00000510852 MT2AP02795 61 aa4.16□□□□□ -1.74
USP53-207ENST00000510852 MT1FP04733 61 aa4.13□□□□□ -1.75
USP53-207ENST00000510852 KRTAP10-10P60014 251 aa4.12□□□□□ -1.75
USP53-207ENST00000510852 LCE4AQ5TA78 99 aa4.07□□□□□ -1.76
USP53-207ENST00000510852 KRTAP9-3Q9BYQ3 159 aa4.04□□□□□ -1.76
USP53-207ENST00000510852 KRTAP9-7A8MTY7 169 aa4.03□□□□□ -1.76
USP53-207ENST00000510852 KRTAP12-1P59990 96 aa4.02□□□□□ -1.77
USP53-207ENST00000510852 M0QZ58 72 aa4.01□□□□□ -1.77
USP53-207ENST00000510852 SPRR2GQ9BYE4 73 aa4□□□□□ -1.77
USP53-207ENST00000510852 LCE1AQ5T7P2 110 aa3.99□□□□□ -1.77
USP53-207ENST00000510852 MT3P25713 68 aa3.96□□□□□ -1.78
USP53-207ENST00000510852 USH2AO75445 5202 aa3.95□□□□□ -1.78
USP53-207ENST00000510852 A0A0D9SG42 100 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms