RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CSAG1Q6PB30 78 aa14.06□□□□□ -0.16
LIMCH1-211ENST00000509638 MT1FP04733 61 aa14□□□□□ -0.17
LIMCH1-211ENST00000509638 NDUFC1O43677 76 aa13.98□□□□□ -0.17
LIMCH1-211ENST00000509638 SPANXA2-OT1Q8N9U9 137 aa13.98□□□□□ -0.17
LIMCH1-211ENST00000509638 CCDC179H3BU77 68 aa13.94□□□□□ -0.18
LIMCH1-211ENST00000509638 CYSTM1Q9H1C7 97 aa13.94□□□□□ -0.18
LIMCH1-211ENST00000509638 KRTAP10-10P60014 251 aa13.93□□□□□ -0.18
LIMCH1-211ENST00000509638 ACYP2P14621 99 aa13.91□□□□□ -0.18
LIMCH1-211ENST00000509638 KRTAP9-2Q9BYQ4 174 aa13.89□□□□□ -0.19
LIMCH1-211ENST00000509638 LCE2DQ5TA82 110 aaPredicted RBP13.88□□□□□ -0.19
LIMCH1-211ENST00000509638 H7BZZ5 65 aa13.85□□□□□ -0.19
LIMCH1-211ENST00000509638 KRTAP9-3Q9BYQ3 159 aa13.71□□□□□ -0.21
LIMCH1-211ENST00000509638 CHKB-CPT1BH3BT56 60 aa13.71□□□□□ -0.22
LIMCH1-211ENST00000509638 H0YAA0 97 aa13.64□□□□□ -0.23
LIMCH1-211ENST00000509638 SPTSSBQ8NFR3 76 aa13.6□□□□□ -0.23
LIMCH1-211ENST00000509638 COA5Q86WW8 74 aa13.58□□□□□ -0.24
LIMCH1-211ENST00000509638 ADM2Q7Z4H4 148 aa13.55□□□□□ -0.24
LIMCH1-211ENST00000509638 TMEM258P61165 79 aa13.54□□□□□ -0.24
LIMCH1-211ENST00000509638 LCE2BO14633 110 aa13.5□□□□□ -0.25
LIMCH1-211ENST00000509638 FSIP2Q5CZC0 6907 aa13.43□□□□□ -0.26
LIMCH1-211ENST00000509638 ATP5EP56381 51 aaPredicted RBP13.42□□□□□ -0.26
LIMCH1-211ENST00000509638 USH2AO75445 5202 aa13.41□□□□□ -0.26
LIMCH1-211ENST00000509638 KRTAP19-1Q8IUB9 90 aa13.4□□□□□ -0.26
LIMCH1-211ENST00000509638 CRIPTQ9P021 101 aa13.37□□□□□ -0.27
LIMCH1-211ENST00000509638 P0C880 135 aa13.36□□□□□ -0.27
LIMCH1-211ENST00000509638 KRTAP3-2Q9BYR7 98 aa13.34□□□□□ -0.27
LIMCH1-211ENST00000509638 SPRR2GQ9BYE4 73 aa13.33□□□□□ -0.28
LIMCH1-211ENST00000509638 CRCT1Q9UGL9 99 aa13.24□□□□□ -0.29
LIMCH1-211ENST00000509638 KRTAP9-6A0A140TA67 174 aa13.15□□□□□ -0.3
LIMCH1-211ENST00000509638 SSPOA2VEC9 5147 aa13.15□□□□□ -0.3
LIMCH1-211ENST00000509638 R4GN34 69 aa13.15□□□□□ -0.3
LIMCH1-211ENST00000509638 RPS28P62857 69 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-211ENST00000509638 KRTAP19-8Q3LI54 63 aa13.11□□□□□ -0.31
LIMCH1-211ENST00000509638 SERP1Q9Y6X1 66 aa13.11□□□□□ -0.31
LIMCH1-211ENST00000509638 M0QZ58 72 aa13.09□□□□□ -0.31
LIMCH1-211ENST00000509638 Q5VV11 94 aa13.07□□□□□ -0.32
LIMCH1-211ENST00000509638 MT1BP07438 61 aa13.03□□□□□ -0.32
LIMCH1-211ENST00000509638 SEC61GP60059 68 aa13.02□□□□□ -0.33
LIMCH1-211ENST00000509638 KRTAP19-6Q3LI70 58 aa12.88□□□□□ -0.35
LIMCH1-211ENST00000509638 LINC01554Q52M75 96 aa12.87□□□□□ -0.35
LIMCH1-211ENST00000509638 A0A1B0GU69 56 aa12.86□□□□□ -0.35
LIMCH1-211ENST00000509638 KRTAP13-4Q3LI77 160 aa12.8□□□□□ -0.36
LIMCH1-211ENST00000509638 SMIM26A0A096LP01 95 aa12.77□□□□□ -0.36
LIMCH1-211ENST00000509638 FCGBPQ9Y6R7 5405 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-211ENST00000509638 A0A1B0GU33 70 aa12.73□□□□□ -0.37
LIMCH1-211ENST00000509638 LINC01558Q9Y6Z2 57 aa12.72□□□□□ -0.37
LIMCH1-211ENST00000509638 PLAC4Q8WY50 150 aa12.69□□□□□ -0.38
LIMCH1-211ENST00000509638 PRR15LQ9BU68 103 aa12.69□□□□□ -0.38
LIMCH1-211ENST00000509638 SPATA8Q6RVD6 105 aa12.61□□□□□ -0.39
LIMCH1-211ENST00000509638 A6NN06 94 aa12.59□□□□□ -0.39
LIMCH1-211ENST00000509638 KRTAP10-5P60370 271 aa12.56□□□□□ -0.4
LIMCH1-211ENST00000509638 V9GYY9 64 aa12.53□□□□□ -0.4
LIMCH1-211ENST00000509638 Q1T7F1 81 aa12.52□□□□□ -0.41
LIMCH1-211ENST00000509638 A0A0D9SG42 100 aa12.49□□□□□ -0.41
LIMCH1-211ENST00000509638 MT1XP80297 61 aa12.42□□□□□ -0.42
LIMCH1-211ENST00000509638 PRO2289Q9P1D8 64 aa12.39□□□□□ -0.43
LIMCH1-211ENST00000509638 PSPHP1O15172 72 aa12.32□□□□□ -0.44
LIMCH1-211ENST00000509638 A8MU10 97 aa12.3□□□□□ -0.44
LIMCH1-211ENST00000509638 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-211ENST00000509638 UQCR11O14957 56 aa12.27□□□□□ -0.44
LIMCH1-211ENST00000509638 KRTAP12-1P59990 96 aa12.24□□□□□ -0.45
LIMCH1-211ENST00000509638 SPINT4Q6UDR6 99 aa12.24□□□□□ -0.45
LIMCH1-211ENST00000509638 CAMK2N1Q7Z7J9 78 aa12.21□□□□□ -0.46
LIMCH1-211ENST00000509638 MACF1Q9UPN3 7388 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-211ENST00000509638 KRTAP12-2P59991 146 aa12.18□□□□□ -0.46
LIMCH1-211ENST00000509638 MIR22HGQ0VDD5 57 aa12.08□□□□□ -0.48
LIMCH1-211ENST00000509638 A6NED7 52 aa11.94□□□□□ -0.5
LIMCH1-211ENST00000509638 SYNE2Q8WXH0 6885 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-211ENST00000509638 KRTAP9-7A8MTY7 169 aa11.92□□□□□ -0.5
LIMCH1-211ENST00000509638 KRTAP10-7P60409 375 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-211ENST00000509638 KMT2DO14686 5537 aa11.81□□□□□ -0.52
LIMCH1-211ENST00000509638 KRTAP10-12P60413 245 aa11.78□□□□□ -0.52
LIMCH1-211ENST00000509638 BRK1Q8WUW1 75 aa11.75□□□□□ -0.53
LIMCH1-211ENST00000509638 CDC42SE1Q9NRR8 79 aa11.71□□□□□ -0.53
LIMCH1-211ENST00000509638 KRTAP6-3Q3LI67 103 aa11.71□□□□□ -0.54
LIMCH1-211ENST00000509638 K7ERS5 55 aa11.69□□□□□ -0.54
LIMCH1-211ENST00000509638 KRTAP4-8A0A0G2JLE6 195 aa11.63□□□□□ -0.55
LIMCH1-211ENST00000509638 KRTAP4-8Q9BYQ9 185 aa11.63□□□□□ -0.55
LIMCH1-211ENST00000509638 C10orf95Q9H7T3 257 aa11.62□□□□□ -0.55
LIMCH1-211ENST00000509638 KRTAP8-1Q8IUC2 63 aa11.58□□□□□ -0.55
LIMCH1-211ENST00000509638 PRO0628Q9UI54 55 aa11.58□□□□□ -0.55
LIMCH1-211ENST00000509638 KRTAP5-9P26371 169 aa11.52□□□□□ -0.57
LIMCH1-211ENST00000509638 TNP1P09430 55 aa11.43□□□□□ -0.58
LIMCH1-211ENST00000509638 SPRR2FQ96RM1 72 aa11.39□□□□□ -0.59
LIMCH1-211ENST00000509638 MUC12Q9UKN1 5478 aa11.37□□□□□ -0.59
LIMCH1-211ENST00000509638 MDN1Q9NU22 5596 aa11.22□□□□□ -0.61
LIMCH1-211ENST00000509638 KRTAP25-1Q3LHN0 102 aa11.16□□□□□ -0.62
LIMCH1-211ENST00000509638 LCE3AQ5TA76 89 aa11.16□□□□□ -0.62
LIMCH1-211ENST00000509638 PMAIP1Q13794 54 aa11.12□□□□□ -0.63
LIMCH1-211ENST00000509638 KRTAP19-7Q3SYF9 63 aa11.08□□□□□ -0.64
LIMCH1-211ENST00000509638 NEBP20929 6669 aa11.07□□□□□ -0.64
LIMCH1-211ENST00000509638 ROMO1P60602 79 aa11.06□□□□□ -0.64
LIMCH1-211ENST00000509638 SPRR2EP22531 72 aa11.03□□□□□ -0.64
LIMCH1-211ENST00000509638 SPRR2BP35325 72 aa11.03□□□□□ -0.64
LIMCH1-211ENST00000509638 SPRR2AP35326 72 aa11.03□□□□□ -0.64
LIMCH1-211ENST00000509638 KRTAP19-5Q3LI72 72 aa11.01□□□□□ -0.65
LIMCH1-211ENST00000509638 LCE1AQ5T7P2 110 aa10.99□□□□□ -0.65
LIMCH1-211ENST00000509638 MT1EP04732 61 aa10.95□□□□□ -0.66
LIMCH1-211ENST00000509638 KRTAP23-1A1A580 65 aa10.74□□□□□ -0.69
LIMCH1-211ENST00000509638 KRTAP12-3P60328 96 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms