RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SCGB1A1P11684 91 aa4.54□□□□□ -1.68
NUP54-207ENST00000508583 KRTAP10-6P60371 365 aaPredicted RBP4.54□□□□□ -1.68
NUP54-207ENST00000508583 H1FX-AS1Q4G0G2 97 aa4.53□□□□□ -1.68
NUP54-207ENST00000508583 H0Y9P7 68 aa4.52□□□□□ -1.69
NUP54-207ENST00000508583 MP68P56378 58 aa4.52□□□□□ -1.69
NUP54-207ENST00000508583 C4orf26Q17RF5 130 aa4.51□□□□□ -1.69
NUP54-207ENST00000508583 CYP4F30PQ9H0H9 118 aa4.51□□□□□ -1.69
NUP54-207ENST00000508583 C5orf47Q569G3 176 aa4.49□□□□□ -1.69
NUP54-207ENST00000508583 OCR1Q9BZK8 76 aa4.49□□□□□ -1.69
NUP54-207ENST00000508583 H3BPC8 53 aa4.48□□□□□ -1.69
NUP54-207ENST00000508583 SMIM20Q8N5G0 67 aa4.48□□□□□ -1.69
NUP54-207ENST00000508583 MT-ATP8P03928 68 aa4.47□□□□□ -1.69
NUP54-207ENST00000508583 C1orf64Q8NEQ6 169 aa4.47□□□□□ -1.69
NUP54-207ENST00000508583 KRTAP23-1A1A580 65 aa4.46□□□□□ -1.7
NUP54-207ENST00000508583 LINC00208Q96KT6 92 aa4.45□□□□□ -1.7
NUP54-207ENST00000508583 FAM236AA0A1B0GUQ0 79 aa4.43□□□□□ -1.7
NUP54-207ENST00000508583 FAM236BA0A1B0GV22 79 aa4.43□□□□□ -1.7
NUP54-207ENST00000508583 A0A0A0MQY5 61 aa4.42□□□□□ -1.7
NUP54-207ENST00000508583 A8MUN3 132 aa4.42□□□□□ -1.7
NUP54-207ENST00000508583 S4R3F8 94 aa4.42□□□□□ -1.7
NUP54-207ENST00000508583 TRAV7A0A075B6U4 112 aa4.4□□□□□ -1.71
NUP54-207ENST00000508583 KRTAP3-1Q9BYR8 98 aa4.39□□□□□ -1.71
NUP54-207ENST00000508583 CSAG1Q6PB30 78 aa4.38□□□□□ -1.71
NUP54-207ENST00000508583 MT2AP02795 61 aa4.37□□□□□ -1.71
NUP54-207ENST00000508583 KRTAP10-10P60014 251 aa4.37□□□□□ -1.71
NUP54-207ENST00000508583 KLKP1Q107X0 134 aa4.35□□□□□ -1.71
NUP54-207ENST00000508583 LCA10Q71F78 164 aa4.35□□□□□ -1.71
NUP54-207ENST00000508583 NDUFC1O43677 76 aa4.34□□□□□ -1.71
NUP54-207ENST00000508583 MT1FP04733 61 aa4.33□□□□□ -1.72
NUP54-207ENST00000508583 SERP2Q8N6R1 65 aa4.32□□□□□ -1.72
NUP54-207ENST00000508583 FSIP2Q5CZC0 6907 aa4.32□□□□□ -1.72
NUP54-207ENST00000508583 DMAC1Q96GE9 116 aa4.3□□□□□ -1.72
NUP54-207ENST00000508583 CRCT1Q9UGL9 99 aa4.27□□□□□ -1.73
NUP54-207ENST00000508583 ACYP2P14621 99 aa4.26□□□□□ -1.73
NUP54-207ENST00000508583 C20orf197Q8N268 126 aa4.26□□□□□ -1.73
NUP54-207ENST00000508583 SNURFQ9Y675 71 aa4.25□□□□□ -1.73
NUP54-207ENST00000508583 H0YAA0 97 aa4.24□□□□□ -1.73
NUP54-207ENST00000508583 SPANXA2-OT1Q8N9U9 137 aa4.23□□□□□ -1.73
NUP54-207ENST00000508583 SPTSSBQ8NFR3 76 aa4.23□□□□□ -1.73
NUP54-207ENST00000508583 COX7CP15954 63 aa4.22□□□□□ -1.73
NUP54-207ENST00000508583 CRIPTQ9P021 101 aa4.21□□□□□ -1.74
NUP54-207ENST00000508583 USH2AO75445 5202 aa4.21□□□□□ -1.74
NUP54-207ENST00000508583 CHKB-CPT1BH3BT56 60 aa4.2□□□□□ -1.74
NUP54-207ENST00000508583 ANAPC13Q9BS18 74 aa4.18□□□□□ -1.74
NUP54-207ENST00000508583 ADM2Q7Z4H4 148 aa4.16□□□□□ -1.74
NUP54-207ENST00000508583 SSPOA2VEC9 5147 aa4.14□□□□□ -1.75
NUP54-207ENST00000508583 SPRR2GQ9BYE4 73 aa4.14□□□□□ -1.75
NUP54-207ENST00000508583 Q5VV11 94 aa4.11□□□□□ -1.75
NUP54-207ENST00000508583 H7BZZ5 65 aa4.1□□□□□ -1.75
NUP54-207ENST00000508583 R4GN34 69 aa4.09□□□□□ -1.75
NUP54-207ENST00000508583 KRTAP19-8Q3LI54 63 aa4.07□□□□□ -1.76
NUP54-207ENST00000508583 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
NUP54-207ENST00000508583 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.07□□□□□ -1.76
NUP54-207ENST00000508583 COA5Q86WW8 74 aa4.07□□□□□ -1.76
NUP54-207ENST00000508583 ATP5EP56381 51 aaPredicted RBP4.05□□□□□ -1.76
NUP54-207ENST00000508583 P0C880 135 aa4.04□□□□□ -1.76
NUP54-207ENST00000508583 M0QZ58 72 aa4.03□□□□□ -1.76
NUP54-207ENST00000508583 SEC61GP60059 68 aa4.03□□□□□ -1.76
NUP54-207ENST00000508583 CYSTM1Q9H1C7 97 aa4.03□□□□□ -1.76
NUP54-207ENST00000508583 CCDC179H3BU77 68 aa4.02□□□□□ -1.77
NUP54-207ENST00000508583 MT1BP07438 61 aa4.01□□□□□ -1.77
NUP54-207ENST00000508583 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
NUP54-207ENST00000508583 SERP1Q9Y6X1 66 aa4□□□□□ -1.77
NUP54-207ENST00000508583 PLAC4Q8WY50 150 aa3.99□□□□□ -1.77
NUP54-207ENST00000508583 A6NN06 94 aa3.98□□□□□ -1.77
NUP54-207ENST00000508583 TMEM258P61165 79 aa3.98□□□□□ -1.77
NUP54-207ENST00000508583 LINC01554Q52M75 96 aa3.95□□□□□ -1.78
NUP54-207ENST00000508583 PRO2289Q9P1D8 64 aa3.95□□□□□ -1.78
NUP54-207ENST00000508583 KRTAP10-5P60370 271 aa3.92□□□□□ -1.78
NUP54-207ENST00000508583 A0A1B0GU69 56 aa3.9□□□□□ -1.79
NUP54-207ENST00000508583 MACF1Q9UPN3 7388 aaKnown RBP3.9□□□□□ -1.79
NUP54-207ENST00000508583 PRR15LQ9BU68 103 aa3.89□□□□□ -1.79
NUP54-207ENST00000508583 A0A1B0GU33 70 aa3.88□□□□□ -1.79
NUP54-207ENST00000508583 SYNE2Q8WXH0 6885 aaKnown RBP3.83□□□□□ -1.8
NUP54-207ENST00000508583 KRTAP13-4Q3LI77 160 aa3.82□□□□□ -1.8
NUP54-207ENST00000508583 KRTAP5-11Q6L8G4 156 aa3.82□□□□□ -1.8
NUP54-207ENST00000508583 MT1XP80297 61 aa3.81□□□□□ -1.8
NUP54-207ENST00000508583 LINC01558Q9Y6Z2 57 aa3.81□□□□□ -1.8
NUP54-207ENST00000508583 SMIM26A0A096LP01 95 aa3.8□□□□□ -1.8
NUP54-207ENST00000508583 CAMK2N1Q7Z7J9 78 aa3.79□□□□□ -1.8
NUP54-207ENST00000508583 A0A0D9SG42 100 aa3.78□□□□□ -1.8
NUP54-207ENST00000508583 SPATA8Q6RVD6 105 aa3.78□□□□□ -1.8
NUP54-207ENST00000508583 V9GYY9 64 aa3.77□□□□□ -1.81
NUP54-207ENST00000508583 KRTAP6-3Q3LI67 103 aa3.75□□□□□ -1.81
NUP54-207ENST00000508583 KRTAP12-2P59991 146 aa3.74□□□□□ -1.81
NUP54-207ENST00000508583 SPINT4Q6UDR6 99 aa3.73□□□□□ -1.81
NUP54-207ENST00000508583 UQCR11O14957 56 aa3.72□□□□□ -1.81
NUP54-207ENST00000508583 KRTAP12-1P59990 96 aa3.69□□□□□ -1.82
NUP54-207ENST00000508583 Q1T7F1 81 aa3.69□□□□□ -1.82
NUP54-207ENST00000508583 KRTAP15-1Q3LI76 137 aa3.67□□□□□ -1.82
NUP54-207ENST00000508583 A8MU10 97 aa3.66□□□□□ -1.82
NUP54-207ENST00000508583 RPS28P62857 69 aaKnown RBP3.66□□□□□ -1.82
NUP54-207ENST00000508583 KRTAP5-9P26371 169 aa3.65□□□□□ -1.83
NUP54-207ENST00000508583 KRTAP8-1Q8IUC2 63 aa3.65□□□□□ -1.83
NUP54-207ENST00000508583 PRAC1Q96KF2 57 aa3.65□□□□□ -1.83
NUP54-207ENST00000508583 KRTAP10-12P60413 245 aa3.64□□□□□ -1.83
NUP54-207ENST00000508583 PSPHP1O15172 72 aa3.63□□□□□ -1.83
NUP54-207ENST00000508583 KRTAP10-7P60409 375 aaPredicted RBP3.63□□□□□ -1.83
NUP54-207ENST00000508583 MIR22HGQ0VDD5 57 aa3.63□□□□□ -1.83
NUP54-207ENST00000508583 KMT2DO14686 5537 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms