RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 HERC2O95714 4834 aa11.19□□□□□ -0.62
UBE2D3-216ENST00000503742 TPRXLQ17RH7 258 aa11.19□□□□□ -0.62
UBE2D3-216ENST00000503742 KRTAP3-1Q9BYR8 98 aa11.18□□□□□ -0.62
UBE2D3-216ENST00000503742 A0A1B0GU69 56 aa11.11□□□□□ -0.63
UBE2D3-216ENST00000503742 COX6B2Q6YFQ2 88 aa11.09□□□□□ -0.63
UBE2D3-216ENST00000503742 LRP2P98164 4655 aa11.04□□□□□ -0.64
UBE2D3-216ENST00000503742 LPAP08519 4548 aa11.03□□□□□ -0.64
UBE2D3-216ENST00000503742 J3QL48 77 aa11.02□□□□□ -0.65
UBE2D3-216ENST00000503742 SPATA8Q6RVD6 105 aa10.99□□□□□ -0.65
UBE2D3-216ENST00000503742 UQCR11O14957 56 aa10.96□□□□□ -0.65
UBE2D3-216ENST00000503742 RBM12B-AS1Q9P1G2 102 aa10.91□□□□□ -0.66
UBE2D3-216ENST00000503742 MIR22HGQ0VDD5 57 aa10.9□□□□□ -0.66
UBE2D3-216ENST00000503742 SEC61BP60468 96 aaKnown RBP10.76□□□□□ -0.69
UBE2D3-216ENST00000503742 KRTAP3-3Q9BYR6 98 aa10.76□□□□□ -0.69
UBE2D3-216ENST00000503742 H1FX-AS1Q4G0G2 97 aa10.72□□□□□ -0.69
UBE2D3-216ENST00000503742 S4R3F8 94 aa10.71□□□□□ -0.69
UBE2D3-216ENST00000503742 MUC17Q685J3 4493 aa10.67□□□□□ -0.7
UBE2D3-216ENST00000503742 PCLOQ9Y6V0 5065 aa10.65□□□□□ -0.7
UBE2D3-216ENST00000503742 KRTAP4-1Q9BYQ7 146 aa10.6□□□□□ -0.71
UBE2D3-216ENST00000503742 PRAC1Q96KF2 57 aa10.57□□□□□ -0.72
UBE2D3-216ENST00000503742 HERC1Q15751 4861 aa10.55□□□□□ -0.72
UBE2D3-216ENST00000503742 ADM2Q7Z4H4 148 aa10.52□□□□□ -0.72
UBE2D3-216ENST00000503742 A0A1B0GU33 70 aa10.5□□□□□ -0.73
UBE2D3-216ENST00000503742 HMCN2Q8NDA2 5059 aa10.5□□□□□ -0.73
UBE2D3-216ENST00000503742 H0YAA0 97 aa10.48□□□□□ -0.73
UBE2D3-216ENST00000503742 KRTAP10-6P60371 365 aaPredicted RBP10.47□□□□□ -0.73
UBE2D3-216ENST00000503742 KRTAP3-2Q9BYR7 98 aa10.46□□□□□ -0.74
UBE2D3-216ENST00000503742 CSAG1Q6PB30 78 aa10.42□□□□□ -0.74
UBE2D3-216ENST00000503742 LINC01554Q52M75 96 aa10.41□□□□□ -0.74
UBE2D3-216ENST00000503742 KRTAP19-2Q3LHN2 52 aa10.4□□□□□ -0.74
UBE2D3-216ENST00000503742 P0C880 135 aa10.32□□□□□ -0.76
UBE2D3-216ENST00000503742 K7ERS5 55 aa10.26□□□□□ -0.77
UBE2D3-216ENST00000503742 KRTAP13-4Q3LI77 160 aa10.24□□□□□ -0.77
UBE2D3-216ENST00000503742 MUC2Q02817 5179 aa10.24□□□□□ -0.77
UBE2D3-216ENST00000503742 FLGP20930 4061 aaPredicted RBP10.19□□□□□ -0.78
UBE2D3-216ENST00000503742 KRTAP25-1Q3LHN0 102 aa10.13□□□□□ -0.79
UBE2D3-216ENST00000503742 M0QZ58 72 aa10.04□□□□□ -0.8
UBE2D3-216ENST00000503742 A0A0D9SG42 100 aa10.03□□□□□ -0.8
UBE2D3-216ENST00000503742 LCE2CQ5TA81 110 aa9.99□□□□□ -0.81
UBE2D3-216ENST00000503742 ROMO1P60602 79 aa9.97□□□□□ -0.81
UBE2D3-216ENST00000503742 RNF213Q63HN8 5207 aa9.95□□□□□ -0.82
UBE2D3-216ENST00000503742 UBR4Q5T4S7 5183 aa9.92□□□□□ -0.82
UBE2D3-216ENST00000503742 LORP23490 312 aaPredicted RBP9.9□□□□□ -0.82
UBE2D3-216ENST00000503742 R4GN34 69 aa9.88□□□□□ -0.83
UBE2D3-216ENST00000503742 KRTAP12-1P59990 96 aa9.84□□□□□ -0.83
UBE2D3-216ENST00000503742 KRTAP12-2P59991 146 aa9.84□□□□□ -0.83
UBE2D3-216ENST00000503742 FAT4Q6V0I7 4981 aa9.81□□□□□ -0.84
UBE2D3-216ENST00000503742 SPINT4Q6UDR6 99 aa9.75□□□□□ -0.85
UBE2D3-216ENST00000503742 MT1HP80294 61 aa9.75□□□□□ -0.85
UBE2D3-216ENST00000503742 CRIPTQ9P021 101 aa9.72□□□□□ -0.85
UBE2D3-216ENST00000503742 M0R2T5 61 aa9.62□□□□□ -0.87
UBE2D3-216ENST00000503742 KRTAP9-8Q9BYQ0 159 aa9.46□□□□□ -0.9
UBE2D3-216ENST00000503742 MT2AP02795 61 aa9.44□□□□□ -0.9
UBE2D3-216ENST00000503742 H3BS24 57 aa9.44□□□□□ -0.9
UBE2D3-216ENST00000503742 C10orf95Q9H7T3 257 aa9.44□□□□□ -0.9
UBE2D3-216ENST00000503742 SPRR2GQ9BYE4 73 aa9.43□□□□□ -0.9
UBE2D3-216ENST00000503742 MT1FP04733 61 aa9.41□□□□□ -0.9
UBE2D3-216ENST00000503742 KRTAP19-1Q8IUB9 90 aa9.39□□□□□ -0.91
UBE2D3-216ENST00000503742 KRTAP10-10P60014 251 aa9.35□□□□□ -0.91
UBE2D3-216ENST00000503742 CAMK2N1Q7Z7J9 78 aa9.28□□□□□ -0.92
UBE2D3-216ENST00000503742 KRTAP15-1Q3LI76 137 aa9.23□□□□□ -0.93
UBE2D3-216ENST00000503742 KRTAP19-8Q3LI54 63 aa9.13□□□□□ -0.95
UBE2D3-216ENST00000503742 PLAC4Q8WY50 150 aa9.13□□□□□ -0.95
UBE2D3-216ENST00000503742 LCE2AQ5TA79 106 aaPredicted RBP9.12□□□□□ -0.95
UBE2D3-216ENST00000503742 KRTAP9-3Q9BYQ3 159 aa9.1□□□□□ -0.95
UBE2D3-216ENST00000503742 MT1BP07438 61 aa8.99□□□□□ -0.97
UBE2D3-216ENST00000503742 NDUFAF8A1L188 74 aa8.93□□□□□ -0.98
UBE2D3-216ENST00000503742 PP632Q6XCG6 107 aa8.93□□□□□ -0.98
UBE2D3-216ENST00000503742 TNP1P09430 55 aa8.9□□□□□ -0.98
UBE2D3-216ENST00000503742 LCE2DQ5TA82 110 aaPredicted RBP8.9□□□□□ -0.99
UBE2D3-216ENST00000503742 LCE2BO14633 110 aa8.79□□□□□ -1
UBE2D3-216ENST00000503742 MT1XP80297 61 aa8.78□□□□□ -1
UBE2D3-216ENST00000503742 KRTAP10-5P60370 271 aa8.77□□□□□ -1.01
UBE2D3-216ENST00000503742 KRTAP23-1A1A580 65 aa8.75□□□□□ -1.01
UBE2D3-216ENST00000503742 PRO2289Q9P1D8 64 aa8.55□□□□□ -1.04
UBE2D3-216ENST00000503742 LCE3AQ5TA76 89 aa8.5□□□□□ -1.05
UBE2D3-216ENST00000503742 USH2AO75445 5202 aa8.49□□□□□ -1.05
UBE2D3-216ENST00000503742 LUZP6Q538Z0 58 aa8.49□□□□□ -1.05
UBE2D3-216ENST00000503742 KRTAP10-7P60409 375 aaPredicted RBP8.44□□□□□ -1.06
UBE2D3-216ENST00000503742 KRTAP10-12P60413 245 aa8.4□□□□□ -1.06
UBE2D3-216ENST00000503742 KRTAP8-1Q8IUC2 63 aa8.35□□□□□ -1.07
UBE2D3-216ENST00000503742 SPRR5A0A1B0GTR4 108 aa8.28□□□□□ -1.08
UBE2D3-216ENST00000503742 SSPOA2VEC9 5147 aa8.23□□□□□ -1.09
UBE2D3-216ENST00000503742 KRTAP12-3P60328 96 aa8.14□□□□□ -1.11
UBE2D3-216ENST00000503742 KRTAP19-6Q3LI70 58 aa8.14□□□□□ -1.11
UBE2D3-216ENST00000503742 A0A0A0MQY5 61 aa8.11□□□□□ -1.11
UBE2D3-216ENST00000503742 KRTAP4-8A0A0G2JLE6 195 aa8.04□□□□□ -1.12
UBE2D3-216ENST00000503742 KRTAP4-8Q9BYQ9 185 aa8.04□□□□□ -1.12
UBE2D3-216ENST00000503742 KMT2DO14686 5537 aa8.02□□□□□ -1.13
UBE2D3-216ENST00000503742 KRTAP19-5Q3LI72 72 aa8□□□□□ -1.13
UBE2D3-216ENST00000503742 FSIP2Q5CZC0 6907 aa7.93□□□□□ -1.14
UBE2D3-216ENST00000503742 KRTAP19-7Q3SYF9 63 aa7.84□□□□□ -1.15
UBE2D3-216ENST00000503742 FCGBPQ9Y6R7 5405 aaPredicted RBP7.75□□□□□ -1.17
UBE2D3-216ENST00000503742 MT1EP04732 61 aa7.66□□□□□ -1.18
UBE2D3-216ENST00000503742 LCE3CQ5T5A8 94 aa7.64□□□□□ -1.19
UBE2D3-216ENST00000503742 KRTAP9-2Q9BYQ4 174 aa7.62□□□□□ -1.19
UBE2D3-216ENST00000503742 MT1LQ93083 61 aa7.55□□□□□ -1.2
UBE2D3-216ENST00000503742 KRTAP19-4Q3LI73 84 aa7.54□□□□□ -1.2
UBE2D3-216ENST00000503742 INE1O15225 51 aa7.4□□□□□ -1.22
UBE2D3-216ENST00000503742 KRTAP4-7Q9BYR0 210 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms