RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 HSPG2P98160 4391 aa5.86□□□□□ -1.47
CMSS1-208ENST00000496116 LRP1Q07954 4544 aaKnown RBP5.85□□□□□ -1.47
CMSS1-208ENST00000496116 FAT3Q8TDW7 4589 aa5.85□□□□□ -1.47
CMSS1-208ENST00000496116 COX6B2Q6YFQ2 88 aa5.85□□□□□ -1.47
CMSS1-208ENST00000496116 RPL37P61927 97 aaKnown RBP5.83□□□□□ -1.48
CMSS1-208ENST00000496116 XP32Q5T750 250 aa5.8□□□□□ -1.48
CMSS1-208ENST00000496116 RYR1P21817 5038 aa5.8□□□□□ -1.48
CMSS1-208ENST00000496116 DMBT1Q9UGM3 2413 aaPredicted RBP5.79□□□□□ -1.48
CMSS1-208ENST00000496116 KRTAP17-1Q9BYP8 105 aa5.77□□□□□ -1.49
CMSS1-208ENST00000496116 MT1HL1P0DM35 61 aa5.77□□□□□ -1.49
CMSS1-208ENST00000496116 BIRC6Q9NR09 4857 aa5.75□□□□□ -1.49
CMSS1-208ENST00000496116 A0A1B0GU33 70 aa5.72□□□□□ -1.49
CMSS1-208ENST00000496116 H1FX-AS1Q4G0G2 97 aa5.7□□□□□ -1.5
CMSS1-208ENST00000496116 KIAA1109Q2LD37 5005 aa5.7□□□□□ -1.5
CMSS1-208ENST00000496116 EPPK1P58107 5090 aaKnown RBP5.69□□□□□ -1.5
CMSS1-208ENST00000496116 LCE2CQ5TA81 110 aa5.69□□□□□ -1.5
CMSS1-208ENST00000496116 H0YAA0 97 aa5.68□□□□□ -1.5
CMSS1-208ENST00000496116 KRTAP4-8Q9BYQ9 185 aa5.68□□□□□ -1.5
CMSS1-208ENST00000496116 RBM12B-AS1Q9P1G2 102 aa5.68□□□□□ -1.5
CMSS1-208ENST00000496116 MYCBP2O75592 4640 aa5.67□□□□□ -1.5
CMSS1-208ENST00000496116 SEC61BP60468 96 aaKnown RBP5.67□□□□□ -1.5
CMSS1-208ENST00000496116 TPRXLQ17RH7 258 aa5.67□□□□□ -1.5
CMSS1-208ENST00000496116 S4R3F8 94 aa5.66□□□□□ -1.5
CMSS1-208ENST00000496116 LORP23490 312 aaPredicted RBP5.65□□□□□ -1.5
CMSS1-208ENST00000496116 ADM2Q7Z4H4 148 aa5.6□□□□□ -1.51
CMSS1-208ENST00000496116 PRAC1Q96KF2 57 aa5.6□□□□□ -1.51
CMSS1-208ENST00000496116 K7ERS5 55 aa5.56□□□□□ -1.52
CMSS1-208ENST00000496116 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.56□□□□□ -1.52
CMSS1-208ENST00000496116 KRTAP10-6P60371 365 aaPredicted RBP5.56□□□□□ -1.52
CMSS1-208ENST00000496116 KRTAP9-2Q9BYQ4 174 aa5.55□□□□□ -1.52
CMSS1-208ENST00000496116 KRTAP4-5Q9BYR2 181 aa5.54□□□□□ -1.52
CMSS1-208ENST00000496116 KRTAP9-6A0A140TA67 174 aa5.53□□□□□ -1.52
CMSS1-208ENST00000496116 LRP2P98164 4655 aa5.5□□□□□ -1.53
CMSS1-208ENST00000496116 HERC2O95714 4834 aa5.49□□□□□ -1.53
CMSS1-208ENST00000496116 CSAG1Q6PB30 78 aa5.48□□□□□ -1.53
CMSS1-208ENST00000496116 LPAP08519 4548 aa5.48□□□□□ -1.53
CMSS1-208ENST00000496116 P0C880 135 aa5.46□□□□□ -1.54
CMSS1-208ENST00000496116 KRTAP13-4Q3LI77 160 aa5.45□□□□□ -1.54
CMSS1-208ENST00000496116 PCLOQ9Y6V0 5065 aa5.45□□□□□ -1.54
CMSS1-208ENST00000496116 ABCA13Q86UQ4 5058 aa5.44□□□□□ -1.54
CMSS1-208ENST00000496116 KRTAP23-1A1A580 65 aa5.44□□□□□ -1.54
CMSS1-208ENST00000496116 A0A0D9SG42 100 aa5.43□□□□□ -1.54
CMSS1-208ENST00000496116 LINC01554Q52M75 96 aa5.43□□□□□ -1.54
CMSS1-208ENST00000496116 M0QZ58 72 aa5.36□□□□□ -1.55
CMSS1-208ENST00000496116 ROMO1P60602 79 aa5.36□□□□□ -1.55
CMSS1-208ENST00000496116 KRTAP25-1Q3LHN0 102 aa5.36□□□□□ -1.55
CMSS1-208ENST00000496116 LCE3BQ5TA77 95 aa5.36□□□□□ -1.55
CMSS1-208ENST00000496116 KRTAP4-8A0A0G2JLE6 195 aa5.32□□□□□ -1.56
CMSS1-208ENST00000496116 KRTAP12-2P59991 146 aa5.29□□□□□ -1.56
CMSS1-208ENST00000496116 KRTAP4-1Q9BYQ7 146 aa5.29□□□□□ -1.56
CMSS1-208ENST00000496116 MUC17Q685J3 4493 aa5.29□□□□□ -1.56
CMSS1-208ENST00000496116 SPINT4Q6UDR6 99 aa5.29□□□□□ -1.56
CMSS1-208ENST00000496116 KRTAP12-1P59990 96 aa5.27□□□□□ -1.57
CMSS1-208ENST00000496116 KRTAP9-9Q9BYP9 154 aa5.27□□□□□ -1.57
CMSS1-208ENST00000496116 KRTAP9-4Q9BYQ2 154 aa5.27□□□□□ -1.57
CMSS1-208ENST00000496116 R4GN34 69 aa5.25□□□□□ -1.57
CMSS1-208ENST00000496116 CRIPTQ9P021 101 aa5.24□□□□□ -1.57
CMSS1-208ENST00000496116 KRTAP4-12Q9BQ66 201 aa5.21□□□□□ -1.57
CMSS1-208ENST00000496116 KRTAP19-2Q3LHN2 52 aa5.2□□□□□ -1.58
CMSS1-208ENST00000496116 KRTAP4-7Q9BYR0 210 aa5.18□□□□□ -1.58
CMSS1-208ENST00000496116 C10orf95Q9H7T3 257 aa5.1□□□□□ -1.59
CMSS1-208ENST00000496116 HERC1Q15751 4861 aa5.08□□□□□ -1.6
CMSS1-208ENST00000496116 MUC2Q02817 5179 aa5.06□□□□□ -1.6
CMSS1-208ENST00000496116 FLGP20930 4061 aaPredicted RBP5.05□□□□□ -1.6
CMSS1-208ENST00000496116 LCE1DQ5T752 114 aa5.03□□□□□ -1.6
CMSS1-208ENST00000496116 HMCN2Q8NDA2 5059 aa5□□□□□ -1.61
CMSS1-208ENST00000496116 CAMK2N1Q7Z7J9 78 aa4.97□□□□□ -1.61
CMSS1-208ENST00000496116 KRTAP4-9Q9BYQ8 210 aa4.96□□□□□ -1.62
CMSS1-208ENST00000496116 KRTAP4-2Q9BYR5 136 aa4.94□□□□□ -1.62
CMSS1-208ENST00000496116 KRTAP19-1Q8IUB9 90 aa4.93□□□□□ -1.62
CMSS1-208ENST00000496116 UBR4Q5T4S7 5183 aa4.9□□□□□ -1.62
CMSS1-208ENST00000496116 M0R2T5 61 aa4.88□□□□□ -1.63
CMSS1-208ENST00000496116 KRTAP15-1Q3LI76 137 aa4.85□□□□□ -1.63
CMSS1-208ENST00000496116 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
CMSS1-208ENST00000496116 MT1HP80294 61 aa4.84□□□□□ -1.64
CMSS1-208ENST00000496116 SPRR2GQ9BYE4 73 aa4.82□□□□□ -1.64
CMSS1-208ENST00000496116 FAT4Q6V0I7 4981 aa4.8□□□□□ -1.64
CMSS1-208ENST00000496116 KRTAP5-3Q6L8H2 238 aa4.79□□□□□ -1.64
CMSS1-208ENST00000496116 PLAC4Q8WY50 150 aa4.79□□□□□ -1.64
CMSS1-208ENST00000496116 TNP1P09430 55 aa4.78□□□□□ -1.64
CMSS1-208ENST00000496116 RNF213Q63HN8 5207 aa4.76□□□□□ -1.65
CMSS1-208ENST00000496116 KRTAP10-10P60014 251 aa4.73□□□□□ -1.65
CMSS1-208ENST00000496116 MT2AP02795 61 aa4.72□□□□□ -1.65
CMSS1-208ENST00000496116 MT1FP04733 61 aa4.71□□□□□ -1.66
CMSS1-208ENST00000496116 KRTAP9-8Q9BYQ0 159 aa4.7□□□□□ -1.66
CMSS1-208ENST00000496116 NDUFAF8A1L188 74 aa4.67□□□□□ -1.66
CMSS1-208ENST00000496116 KRTAP4-11Q9BYQ6 195 aa4.67□□□□□ -1.66
CMSS1-208ENST00000496116 LUZP6Q538Z0 58 aa4.66□□□□□ -1.66
CMSS1-208ENST00000496116 KRTAP19-8Q3LI54 63 aa4.62□□□□□ -1.67
CMSS1-208ENST00000496116 MT1BP07438 61 aa4.53□□□□□ -1.68
CMSS1-208ENST00000496116 KRTAP9-3Q9BYQ3 159 aa4.51□□□□□ -1.69
CMSS1-208ENST00000496116 KRTAP10-5P60370 271 aa4.48□□□□□ -1.69
CMSS1-208ENST00000496116 LCE3AQ5TA76 89 aa4.48□□□□□ -1.69
CMSS1-208ENST00000496116 MT1XP80297 61 aa4.48□□□□□ -1.69
CMSS1-208ENST00000496116 PRO2289Q9P1D8 64 aa4.42□□□□□ -1.7
CMSS1-208ENST00000496116 SPRR5A0A1B0GTR4 108 aa4.41□□□□□ -1.7
CMSS1-208ENST00000496116 KRTAP8-1Q8IUC2 63 aa4.4□□□□□ -1.7
CMSS1-208ENST00000496116 KRTAP10-12P60413 245 aa4.39□□□□□ -1.71
CMSS1-208ENST00000496116 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
CMSS1-208ENST00000496116 KRTAP10-7P60409 375 aaPredicted RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms