RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 MYCBP2O75592 4640 aa6.35□□□□□ -1.39
RFC4-214ENST00000494047 J3QL48 77 aa6.35□□□□□ -1.39
RFC4-214ENST00000494047 HERC1Q15751 4861 aa6.34□□□□□ -1.39
RFC4-214ENST00000494047 RBM12B-AS1Q9P1G2 102 aa6.31□□□□□ -1.4
RFC4-214ENST00000494047 PKHD1L1Q86WI1 4243 aa6.29□□□□□ -1.4
RFC4-214ENST00000494047 FAT3Q8TDW7 4589 aa6.25□□□□□ -1.41
RFC4-214ENST00000494047 LRP1Q07954 4544 aaKnown RBP6.25□□□□□ -1.41
RFC4-214ENST00000494047 UBR4Q5T4S7 5183 aa6.19□□□□□ -1.42
RFC4-214ENST00000494047 K7ERS5 55 aa6.18□□□□□ -1.42
RFC4-214ENST00000494047 COX6B2Q6YFQ2 88 aa6.18□□□□□ -1.42
RFC4-214ENST00000494047 MT1HL1P0DM35 61 aa6.18□□□□□ -1.42
RFC4-214ENST00000494047 LCE2AQ5TA79 106 aaPredicted RBP6.17□□□□□ -1.42
RFC4-214ENST00000494047 A0A1B0GU33 70 aa6.16□□□□□ -1.42
RFC4-214ENST00000494047 C9orf92A6NGG3 77 aa6.15□□□□□ -1.43
RFC4-214ENST00000494047 TNXBP22105 4242 aa6.13□□□□□ -1.43
RFC4-214ENST00000494047 KRTAP10-8P60410 259 aa6.13□□□□□ -1.43
RFC4-214ENST00000494047 H1FX-AS1Q4G0G2 97 aa6.13□□□□□ -1.43
RFC4-214ENST00000494047 LCE2CQ5TA81 110 aa6.12□□□□□ -1.43
RFC4-214ENST00000494047 LINC01554Q52M75 96 aa6.1□□□□□ -1.43
RFC4-214ENST00000494047 HMCN2Q8NDA2 5059 aa6.09□□□□□ -1.43
RFC4-214ENST00000494047 H0YAA0 97 aa6.06□□□□□ -1.44
RFC4-214ENST00000494047 RPL37P61927 97 aaKnown RBP6.06□□□□□ -1.44
RFC4-214ENST00000494047 KRTAP3-1Q9BYR8 98 aa6.06□□□□□ -1.44
RFC4-214ENST00000494047 PRAC1Q96KF2 57 aa6.02□□□□□ -1.45
RFC4-214ENST00000494047 CSAG1Q6PB30 78 aa5.96□□□□□ -1.45
RFC4-214ENST00000494047 S4R3F8 94 aa5.96□□□□□ -1.45
RFC4-214ENST00000494047 ADM2Q7Z4H4 148 aa5.95□□□□□ -1.46
RFC4-214ENST00000494047 LORP23490 312 aaPredicted RBP5.94□□□□□ -1.46
RFC4-214ENST00000494047 KRTAP25-1Q3LHN0 102 aa5.93□□□□□ -1.46
RFC4-214ENST00000494047 XP32Q5T750 250 aa5.93□□□□□ -1.46
RFC4-214ENST00000494047 LRP2P98164 4655 aa5.91□□□□□ -1.46
RFC4-214ENST00000494047 ROMO1P60602 79 aa5.88□□□□□ -1.47
RFC4-214ENST00000494047 TPRXLQ17RH7 258 aa5.86□□□□□ -1.47
RFC4-214ENST00000494047 KRTAP10-6P60371 365 aaPredicted RBP5.83□□□□□ -1.48
RFC4-214ENST00000494047 M0QZ58 72 aa5.8□□□□□ -1.48
RFC4-214ENST00000494047 LPAP08519 4548 aa5.79□□□□□ -1.48
RFC4-214ENST00000494047 RNF213Q63HN8 5207 aa5.79□□□□□ -1.48
RFC4-214ENST00000494047 CRIPTQ9P021 101 aa5.68□□□□□ -1.5
RFC4-214ENST00000494047 SEC61BP60468 96 aaKnown RBP5.67□□□□□ -1.5
RFC4-214ENST00000494047 KRTAP13-4Q3LI77 160 aa5.67□□□□□ -1.5
RFC4-214ENST00000494047 A0A0D9SG42 100 aa5.67□□□□□ -1.5
RFC4-214ENST00000494047 P0C880 135 aa5.66□□□□□ -1.5
RFC4-214ENST00000494047 MUC2Q02817 5179 aa5.64□□□□□ -1.51
RFC4-214ENST00000494047 MUC17Q685J3 4493 aa5.62□□□□□ -1.51
RFC4-214ENST00000494047 KRTAP12-1P59990 96 aa5.58□□□□□ -1.52
RFC4-214ENST00000494047 KRTAP9-2Q9BYQ4 174 aa5.58□□□□□ -1.52
RFC4-214ENST00000494047 KRTAP9-6A0A140TA67 174 aa5.55□□□□□ -1.52
RFC4-214ENST00000494047 KRTAP12-2P59991 146 aa5.55□□□□□ -1.52
RFC4-214ENST00000494047 SPINT4Q6UDR6 99 aa5.55□□□□□ -1.52
RFC4-214ENST00000494047 R4GN34 69 aa5.54□□□□□ -1.52
RFC4-214ENST00000494047 LOC100996750A0A140TA64 210 aa5.51□□□□□ -1.53
RFC4-214ENST00000494047 KRTAP4-6Q9BYQ5 205 aa5.51□□□□□ -1.53
RFC4-214ENST00000494047 FAT4Q6V0I7 4981 aa5.5□□□□□ -1.53
RFC4-214ENST00000494047 H3BS24 57 aa5.43□□□□□ -1.54
RFC4-214ENST00000494047 KRTAP4-1Q9BYQ7 146 aa5.42□□□□□ -1.54
RFC4-214ENST00000494047 PP632Q6XCG6 107 aa5.41□□□□□ -1.54
RFC4-214ENST00000494047 C10orf95Q9H7T3 257 aa5.36□□□□□ -1.55
RFC4-214ENST00000494047 KRTAP15-1Q3LI76 137 aa5.33□□□□□ -1.56
RFC4-214ENST00000494047 KRTAP19-2Q3LHN2 52 aa5.29□□□□□ -1.56
RFC4-214ENST00000494047 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
RFC4-214ENST00000494047 MT1HP80294 61 aa5.25□□□□□ -1.57
RFC4-214ENST00000494047 CAMK2N1Q7Z7J9 78 aa5.25□□□□□ -1.57
RFC4-214ENST00000494047 FSIP2Q5CZC0 6907 aa5.24□□□□□ -1.57
RFC4-214ENST00000494047 CRCT1Q9UGL9 99 aa5.2□□□□□ -1.58
RFC4-214ENST00000494047 FLGP20930 4061 aaPredicted RBP5.2□□□□□ -1.58
RFC4-214ENST00000494047 M0R2T5 61 aa5.19□□□□□ -1.58
RFC4-214ENST00000494047 PLAC4Q8WY50 150 aa5.16□□□□□ -1.58
RFC4-214ENST00000494047 NDUFAF8A1L188 74 aa5.15□□□□□ -1.59
RFC4-214ENST00000494047 TNP1P09430 55 aa5.14□□□□□ -1.59
RFC4-214ENST00000494047 LUZP6Q538Z0 58 aa5.09□□□□□ -1.59
RFC4-214ENST00000494047 A0A0A0MQY5 61 aa5.08□□□□□ -1.6
RFC4-214ENST00000494047 KRTAP4-8Q9BYQ9 185 aa5.08□□□□□ -1.6
RFC4-214ENST00000494047 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.01□□□□□ -1.61
RFC4-214ENST00000494047 SPRR2GQ9BYE4 73 aa5□□□□□ -1.61
RFC4-214ENST00000494047 KRTAP9-8Q9BYQ0 159 aa4.97□□□□□ -1.61
RFC4-214ENST00000494047 KRTAP9-7A8MTY7 169 aa4.94□□□□□ -1.62
RFC4-214ENST00000494047 KRTAP4-12Q9BQ66 201 aa4.91□□□□□ -1.62
RFC4-214ENST00000494047 MT2AP02795 61 aa4.9□□□□□ -1.63
RFC4-214ENST00000494047 KRTAP10-10P60014 251 aa4.87□□□□□ -1.63
RFC4-214ENST00000494047 SPRR5A0A1B0GTR4 108 aa4.86□□□□□ -1.63
RFC4-214ENST00000494047 KRTAP19-1Q8IUB9 90 aa4.85□□□□□ -1.63
RFC4-214ENST00000494047 MT1FP04733 61 aa4.84□□□□□ -1.63
RFC4-214ENST00000494047 LCE3BQ5TA77 95 aa4.83□□□□□ -1.64
RFC4-214ENST00000494047 USH2AO75445 5202 aa4.82□□□□□ -1.64
RFC4-214ENST00000494047 KRTAP9-3Q9BYQ3 159 aa4.81□□□□□ -1.64
RFC4-214ENST00000494047 KRTAP19-8Q3LI54 63 aa4.78□□□□□ -1.64
RFC4-214ENST00000494047 KRTAP9-9Q9BYP9 154 aa4.77□□□□□ -1.65
RFC4-214ENST00000494047 KRTAP9-4Q9BYQ2 154 aa4.77□□□□□ -1.65
RFC4-214ENST00000494047 SSPOA2VEC9 5147 aa4.76□□□□□ -1.65
RFC4-214ENST00000494047 KRTAP8-1Q8IUC2 63 aa4.69□□□□□ -1.66
RFC4-214ENST00000494047 PRO2289Q9P1D8 64 aa4.68□□□□□ -1.66
RFC4-214ENST00000494047 FCGBPQ9Y6R7 5405 aaPredicted RBP4.65□□□□□ -1.66
RFC4-214ENST00000494047 KRTAP4-8A0A0G2JLE6 195 aa4.65□□□□□ -1.66
RFC4-214ENST00000494047 LCE3AQ5TA76 89 aa4.65□□□□□ -1.67
RFC4-214ENST00000494047 SYNE2Q8WXH0 6885 aaKnown RBP4.64□□□□□ -1.67
RFC4-214ENST00000494047 KRTAP19-6Q3LI70 58 aa4.64□□□□□ -1.67
RFC4-214ENST00000494047 MACF1Q9UPN3 7388 aaKnown RBP4.6□□□□□ -1.67
RFC4-214ENST00000494047 KRTAP10-12P60413 245 aa4.59□□□□□ -1.67
RFC4-214ENST00000494047 MT1BP07438 61 aa4.56□□□□□ -1.68
RFC4-214ENST00000494047 KRTAP10-5P60370 271 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms