RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 RYR2Q92736 4967 aa5.18□□□□□ -1.58
NPHP3-209ENST00000493732 MIR22HGQ0VDD5 57 aa5.17□□□□□ -1.58
NPHP3-209ENST00000493732 Q5VSD8 79 aa5.17□□□□□ -1.58
NPHP3-209ENST00000493732 A0A0A0MQY5 61 aa5.17□□□□□ -1.58
NPHP3-209ENST00000493732 LINC01554Q52M75 96 aa5.17□□□□□ -1.58
NPHP3-209ENST00000493732 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
NPHP3-209ENST00000493732 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
NPHP3-209ENST00000493732 LCE2CQ5TA81 110 aa5.15□□□□□ -1.59
NPHP3-209ENST00000493732 COX6B2Q6YFQ2 88 aa5.14□□□□□ -1.59
NPHP3-209ENST00000493732 KRTAP17-1Q9BYP8 105 aa5.13□□□□□ -1.59
NPHP3-209ENST00000493732 FLG2Q5D862 2391 aaPredicted RBP5.13□□□□□ -1.59
NPHP3-209ENST00000493732 KRTAP3-1Q9BYR8 98 aa5.11□□□□□ -1.59
NPHP3-209ENST00000493732 RPL37P61927 97 aaKnown RBP5.1□□□□□ -1.59
NPHP3-209ENST00000493732 KMT2CQ8NEZ4 4911 aaKnown RBP5.05□□□□□ -1.6
NPHP3-209ENST00000493732 A0A1B0GU33 70 aa5.04□□□□□ -1.6
NPHP3-209ENST00000493732 FAT3Q8TDW7 4589 aa5.04□□□□□ -1.6
NPHP3-209ENST00000493732 H1FX-AS1Q4G0G2 97 aa5.01□□□□□ -1.61
NPHP3-209ENST00000493732 KRTAP4-12Q9BQ66 201 aa5.01□□□□□ -1.61
NPHP3-209ENST00000493732 TNXBP22105 4242 aa5.01□□□□□ -1.61
NPHP3-209ENST00000493732 HSPG2P98160 4391 aa5.01□□□□□ -1.61
NPHP3-209ENST00000493732 MT1HL1P0DM35 61 aa4.99□□□□□ -1.61
NPHP3-209ENST00000493732 KRTAP5-3Q6L8H2 238 aa4.99□□□□□ -1.61
NPHP3-209ENST00000493732 RYR1P21817 5038 aa4.97□□□□□ -1.61
NPHP3-209ENST00000493732 H0YAA0 97 aa4.97□□□□□ -1.61
NPHP3-209ENST00000493732 LCE1DQ5T752 114 aa4.97□□□□□ -1.61
NPHP3-209ENST00000493732 KRTAP9-8Q9BYQ0 159 aa4.97□□□□□ -1.61
NPHP3-209ENST00000493732 DMBT1Q9UGM3 2413 aaPredicted RBP4.97□□□□□ -1.61
NPHP3-209ENST00000493732 TPRXLQ17RH7 258 aa4.96□□□□□ -1.62
NPHP3-209ENST00000493732 LRP1Q07954 4544 aaKnown RBP4.96□□□□□ -1.62
NPHP3-209ENST00000493732 K7ERS5 55 aa4.95□□□□□ -1.62
NPHP3-209ENST00000493732 S4R3F8 94 aa4.95□□□□□ -1.62
NPHP3-209ENST00000493732 LORP23490 312 aaPredicted RBP4.95□□□□□ -1.62
NPHP3-209ENST00000493732 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
NPHP3-209ENST00000493732 PRAC1Q96KF2 57 aa4.92□□□□□ -1.62
NPHP3-209ENST00000493732 KRTAP4-9Q9BYQ8 210 aa4.9□□□□□ -1.62
NPHP3-209ENST00000493732 RYR3Q15413 4870 aa4.89□□□□□ -1.63
NPHP3-209ENST00000493732 KIAA1109Q2LD37 5005 aa4.86□□□□□ -1.63
NPHP3-209ENST00000493732 KRTAP10-6P60371 365 aaPredicted RBP4.85□□□□□ -1.63
NPHP3-209ENST00000493732 ADM2Q7Z4H4 148 aa4.85□□□□□ -1.63
NPHP3-209ENST00000493732 CSAG1Q6PB30 78 aa4.83□□□□□ -1.64
NPHP3-209ENST00000493732 SEC61BP60468 96 aaKnown RBP4.81□□□□□ -1.64
NPHP3-209ENST00000493732 ROMO1P60602 79 aa4.8□□□□□ -1.64
NPHP3-209ENST00000493732 MYCBP2O75592 4640 aa4.79□□□□□ -1.64
NPHP3-209ENST00000493732 M0QZ58 72 aa4.75□□□□□ -1.65
NPHP3-209ENST00000493732 P0C880 135 aa4.74□□□□□ -1.65
NPHP3-209ENST00000493732 KRTAP13-4Q3LI77 160 aa4.74□□□□□ -1.65
NPHP3-209ENST00000493732 KRTAP25-1Q3LHN0 102 aa4.73□□□□□ -1.65
NPHP3-209ENST00000493732 A0A0D9SG42 100 aa4.72□□□□□ -1.65
NPHP3-209ENST00000493732 KRTAP4-5Q9BYR2 181 aa4.72□□□□□ -1.65
NPHP3-209ENST00000493732 EPPK1P58107 5090 aaKnown RBP4.71□□□□□ -1.65
NPHP3-209ENST00000493732 LRP2P98164 4655 aa4.68□□□□□ -1.66
NPHP3-209ENST00000493732 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
NPHP3-209ENST00000493732 KRTAP12-1P59990 96 aa4.62□□□□□ -1.67
NPHP3-209ENST00000493732 KRTAP12-2P59991 146 aa4.61□□□□□ -1.67
NPHP3-209ENST00000493732 SPINT4Q6UDR6 99 aa4.61□□□□□ -1.67
NPHP3-209ENST00000493732 LPAP08519 4548 aa4.61□□□□□ -1.67
NPHP3-209ENST00000493732 R4GN34 69 aa4.6□□□□□ -1.67
NPHP3-209ENST00000493732 ABCA13Q86UQ4 5058 aa4.59□□□□□ -1.67
NPHP3-209ENST00000493732 KRTAP4-11Q9BYQ6 195 aa4.58□□□□□ -1.68
NPHP3-209ENST00000493732 CRIPTQ9P021 101 aa4.58□□□□□ -1.68
NPHP3-209ENST00000493732 KRTAP4-1Q9BYQ7 146 aa4.54□□□□□ -1.68
NPHP3-209ENST00000493732 MUC17Q685J3 4493 aa4.53□□□□□ -1.68
NPHP3-209ENST00000493732 LUZP6Q538Z0 58 aa4.52□□□□□ -1.69
NPHP3-209ENST00000493732 HERC2O95714 4834 aa4.52□□□□□ -1.69
NPHP3-209ENST00000493732 KRTAP19-2Q3LHN2 52 aa4.5□□□□□ -1.69
NPHP3-209ENST00000493732 NDUFAF8A1L188 74 aa4.46□□□□□ -1.7
NPHP3-209ENST00000493732 BIRC6Q9NR09 4857 aa4.45□□□□□ -1.7
NPHP3-209ENST00000493732 C10orf95Q9H7T3 257 aa4.42□□□□□ -1.7
NPHP3-209ENST00000493732 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
NPHP3-209ENST00000493732 CAMK2N1Q7Z7J9 78 aa4.36□□□□□ -1.71
NPHP3-209ENST00000493732 KRTAP23-1A1A580 65 aa4.35□□□□□ -1.71
NPHP3-209ENST00000493732 FLGP20930 4061 aaPredicted RBP4.33□□□□□ -1.72
NPHP3-209ENST00000493732 PP632Q6XCG6 107 aa4.33□□□□□ -1.72
NPHP3-209ENST00000493732 HMCN2Q8NDA2 5059 aa4.28□□□□□ -1.72
NPHP3-209ENST00000493732 HERC1Q15751 4861 aa4.28□□□□□ -1.72
NPHP3-209ENST00000493732 PCLOQ9Y6V0 5065 aa4.23□□□□□ -1.73
NPHP3-209ENST00000493732 M0R2T5 61 aa4.23□□□□□ -1.73
NPHP3-209ENST00000493732 MUC2Q02817 5179 aa4.22□□□□□ -1.73
NPHP3-209ENST00000493732 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
NPHP3-209ENST00000493732 TNP1P09430 55 aa4.21□□□□□ -1.74
NPHP3-209ENST00000493732 PLAC4Q8WY50 150 aa4.21□□□□□ -1.74
NPHP3-209ENST00000493732 MT1HP80294 61 aa4.17□□□□□ -1.74
NPHP3-209ENST00000493732 KRTAP10-10P60014 251 aa4.11□□□□□ -1.75
NPHP3-209ENST00000493732 MT2AP02795 61 aa4.09□□□□□ -1.76
NPHP3-209ENST00000493732 RNF213Q63HN8 5207 aa4.06□□□□□ -1.76
NPHP3-209ENST00000493732 MT1FP04733 61 aa4.06□□□□□ -1.76
NPHP3-209ENST00000493732 FAT4Q6V0I7 4981 aa4.06□□□□□ -1.76
NPHP3-209ENST00000493732 KRTAP19-8Q3LI54 63 aa4.05□□□□□ -1.76
NPHP3-209ENST00000493732 UBR4Q5T4S7 5183 aa4.01□□□□□ -1.77
NPHP3-209ENST00000493732 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
NPHP3-209ENST00000493732 PRO2289Q9P1D8 64 aa3.93□□□□□ -1.78
NPHP3-209ENST00000493732 MT1BP07438 61 aa3.93□□□□□ -1.78
NPHP3-209ENST00000493732 KRTAP9-3Q9BYQ3 159 aa3.91□□□□□ -1.78
NPHP3-209ENST00000493732 SPRR5A0A1B0GTR4 108 aa3.9□□□□□ -1.78
NPHP3-209ENST00000493732 KRTAP19-4Q3LI73 84 aa3.9□□□□□ -1.78
NPHP3-209ENST00000493732 LCE3AQ5TA76 89 aa3.9□□□□□ -1.78
NPHP3-209ENST00000493732 KRTAP10-5P60370 271 aa3.89□□□□□ -1.79
NPHP3-209ENST00000493732 MT1XP80297 61 aa3.88□□□□□ -1.79
NPHP3-209ENST00000493732 KRTAP8-1Q8IUC2 63 aa3.88□□□□□ -1.79
NPHP3-209ENST00000493732 KRTAP10-12P60413 245 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms