RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 UQCRQO14949 82 aa6.36□□□□□ -1.39
UPF3A-210ENST00000493727 MT3P25713 68 aa6.36□□□□□ -1.39
UPF3A-210ENST00000493727 ATOX1O00244 68 aa6.34□□□□□ -1.39
UPF3A-210ENST00000493727 SMIM20Q8N5G0 67 aa6.34□□□□□ -1.39
UPF3A-210ENST00000493727 Q5W150 140 aa6.33□□□□□ -1.4
UPF3A-210ENST00000493727 OCR1Q9BZK8 76 aa6.33□□□□□ -1.4
UPF3A-210ENST00000493727 TRAV22A0A0B4J277 110 aa6.32□□□□□ -1.4
UPF3A-210ENST00000493727 H0Y9P7 68 aa6.31□□□□□ -1.4
UPF3A-210ENST00000493727 COX6B2Q6YFQ2 88 aa6.31□□□□□ -1.4
UPF3A-210ENST00000493727 TRAV7A0A075B6U4 112 aa6.29□□□□□ -1.4
UPF3A-210ENST00000493727 M0R2T5 61 aa6.29□□□□□ -1.4
UPF3A-210ENST00000493727 MP68P56378 58 aa6.29□□□□□ -1.4
UPF3A-210ENST00000493727 SSPOA2VEC9 5147 aa6.28□□□□□ -1.4
UPF3A-210ENST00000493727 C7orf65Q6ZTY9 151 aa6.27□□□□□ -1.41
UPF3A-210ENST00000493727 USH2AO75445 5202 aa6.26□□□□□ -1.41
UPF3A-210ENST00000493727 SPINK7P58062 85 aa6.26□□□□□ -1.41
UPF3A-210ENST00000493727 C5orf47Q569G3 176 aa6.26□□□□□ -1.41
UPF3A-210ENST00000493727 LOC101927531A0A1B0GV80 90 aa6.25□□□□□ -1.41
UPF3A-210ENST00000493727 LINC00208Q96KT6 92 aa6.24□□□□□ -1.41
UPF3A-210ENST00000493727 SERP2Q8N6R1 65 aa6.23□□□□□ -1.41
UPF3A-210ENST00000493727 C1orf64Q8NEQ6 169 aa6.23□□□□□ -1.41
UPF3A-210ENST00000493727 ANAPC13Q9BS18 74 aa6.22□□□□□ -1.41
UPF3A-210ENST00000493727 H3BPC8 53 aa6.21□□□□□ -1.42
UPF3A-210ENST00000493727 CYP4F30PQ9H0H9 118 aa6.18□□□□□ -1.42
UPF3A-210ENST00000493727 RBM12B-AS1Q9P1G2 102 aa6.17□□□□□ -1.42
UPF3A-210ENST00000493727 HRES1P13985 223 aa6.16□□□□□ -1.42
UPF3A-210ENST00000493727 COX7CP15954 63 aa6.16□□□□□ -1.42
UPF3A-210ENST00000493727 C20orf197Q8N268 126 aa6.16□□□□□ -1.42
UPF3A-210ENST00000493727 FCGBPQ9Y6R7 5405 aaPredicted RBP6.16□□□□□ -1.42
UPF3A-210ENST00000493727 FAM236DA0A1B0GTK5 79 aa6.15□□□□□ -1.42
UPF3A-210ENST00000493727 FAM236CP0DP71 79 aa6.15□□□□□ -1.42
UPF3A-210ENST00000493727 SNURFQ9Y675 71 aa6.14□□□□□ -1.43
UPF3A-210ENST00000493727 KLKP1Q107X0 134 aa6.1□□□□□ -1.43
UPF3A-210ENST00000493727 C4orf26Q17RF5 130 aa6.1□□□□□ -1.43
UPF3A-210ENST00000493727 SYNE2Q8WXH0 6885 aaKnown RBP6.1□□□□□ -1.43
UPF3A-210ENST00000493727 MACF1Q9UPN3 7388 aaKnown RBP6.08□□□□□ -1.44
UPF3A-210ENST00000493727 KRTAP10-7P60409 375 aaPredicted RBP6.05□□□□□ -1.44
UPF3A-210ENST00000493727 CCDC179H3BU77 68 aa6.04□□□□□ -1.44
UPF3A-210ENST00000493727 NDUFC1O43677 76 aa6.02□□□□□ -1.45
UPF3A-210ENST00000493727 H1FX-AS1Q4G0G2 97 aa6□□□□□ -1.45
UPF3A-210ENST00000493727 A8MUN3 132 aa5.98□□□□□ -1.45
UPF3A-210ENST00000493727 CYSTM1Q9H1C7 97 aa5.97□□□□□ -1.45
UPF3A-210ENST00000493727 H7BZZ5 65 aa5.96□□□□□ -1.46
UPF3A-210ENST00000493727 SPANXA2-OT1Q8N9U9 137 aa5.96□□□□□ -1.46
UPF3A-210ENST00000493727 DMAC1Q96GE9 116 aa5.95□□□□□ -1.46
UPF3A-210ENST00000493727 MT2AP02795 61 aa5.93□□□□□ -1.46
UPF3A-210ENST00000493727 S4R3F8 94 aa5.93□□□□□ -1.46
UPF3A-210ENST00000493727 ACYP2P14621 99 aa5.91□□□□□ -1.46
UPF3A-210ENST00000493727 MT1FP04733 61 aa5.89□□□□□ -1.47
UPF3A-210ENST00000493727 LCE1EQ5T753 118 aa5.89□□□□□ -1.47
UPF3A-210ENST00000493727 CHKB-CPT1BH3BT56 60 aa5.86□□□□□ -1.47
UPF3A-210ENST00000493727 ATP5EP56381 51 aaPredicted RBP5.86□□□□□ -1.47
UPF3A-210ENST00000493727 KRTAP10-10P60014 251 aa5.86□□□□□ -1.47
UPF3A-210ENST00000493727 TMEM258P61165 79 aa5.86□□□□□ -1.47
UPF3A-210ENST00000493727 KRTAP5-11Q6L8G4 156 aa5.86□□□□□ -1.47
UPF3A-210ENST00000493727 LCA10Q71F78 164 aa5.86□□□□□ -1.47
UPF3A-210ENST00000493727 LCE1FQ5T754 118 aa5.85□□□□□ -1.47
UPF3A-210ENST00000493727 CSAG1Q6PB30 78 aa5.81□□□□□ -1.48
UPF3A-210ENST00000493727 COA5Q86WW8 74 aa5.8□□□□□ -1.48
UPF3A-210ENST00000493727 KRTAP19-6Q3LI70 58 aa5.79□□□□□ -1.48
UPF3A-210ENST00000493727 PRAC1Q96KF2 57 aa5.79□□□□□ -1.48
UPF3A-210ENST00000493727 SPTSSBQ8NFR3 76 aa5.78□□□□□ -1.48
UPF3A-210ENST00000493727 NEBP20929 6669 aa5.77□□□□□ -1.49
UPF3A-210ENST00000493727 KRTAP6-3Q3LI67 103 aa5.73□□□□□ -1.49
UPF3A-210ENST00000493727 KRTAP10-12P60413 245 aa5.71□□□□□ -1.5
UPF3A-210ENST00000493727 MUC12Q9UKN1 5478 aa5.68□□□□□ -1.5
UPF3A-210ENST00000493727 SERP1Q9Y6X1 66 aa5.67□□□□□ -1.5
UPF3A-210ENST00000493727 KRTAP10-5P60370 271 aa5.66□□□□□ -1.5
UPF3A-210ENST00000493727 NDUFAF8A1L188 74 aa5.64□□□□□ -1.51
UPF3A-210ENST00000493727 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.64□□□□□ -1.51
UPF3A-210ENST00000493727 H0YAA0 97 aa5.62□□□□□ -1.51
UPF3A-210ENST00000493727 ADM2Q7Z4H4 148 aa5.62□□□□□ -1.51
UPF3A-210ENST00000493727 SEC61GP60059 68 aa5.58□□□□□ -1.52
UPF3A-210ENST00000493727 P0C880 135 aa5.52□□□□□ -1.53
UPF3A-210ENST00000493727 A0A1B0GU69 56 aa5.51□□□□□ -1.53
UPF3A-210ENST00000493727 RPS28P62857 69 aaKnown RBP5.51□□□□□ -1.53
UPF3A-210ENST00000493727 CRIPTQ9P021 101 aa5.51□□□□□ -1.53
UPF3A-210ENST00000493727 PRR15LQ9BU68 103 aa5.49□□□□□ -1.53
UPF3A-210ENST00000493727 SMIM26A0A096LP01 95 aa5.48□□□□□ -1.53
UPF3A-210ENST00000493727 LINC01558Q9Y6Z2 57 aa5.48□□□□□ -1.53
UPF3A-210ENST00000493727 V9GYY9 64 aa5.47□□□□□ -1.53
UPF3A-210ENST00000493727 LCE3CQ5T5A8 94 aa5.46□□□□□ -1.54
UPF3A-210ENST00000493727 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
UPF3A-210ENST00000493727 R4GN34 69 aa5.45□□□□□ -1.54
UPF3A-210ENST00000493727 MDN1Q9NU22 5596 aa5.45□□□□□ -1.54
UPF3A-210ENST00000493727 M0QZ58 72 aa5.43□□□□□ -1.54
UPF3A-210ENST00000493727 KMT2DO14686 5537 aa5.42□□□□□ -1.54
UPF3A-210ENST00000493727 Q1T7F1 81 aa5.41□□□□□ -1.54
UPF3A-210ENST00000493727 A0A1B0GU33 70 aa5.4□□□□□ -1.54
UPF3A-210ENST00000493727 SPRR2GQ9BYE4 73 aa5.39□□□□□ -1.55
UPF3A-210ENST00000493727 A6NN06 94 aa5.38□□□□□ -1.55
UPF3A-210ENST00000493727 PSPHP1O15172 72 aa5.37□□□□□ -1.55
UPF3A-210ENST00000493727 Q5VV11 94 aa5.37□□□□□ -1.55
UPF3A-210ENST00000493727 KRTAP5-9P26371 169 aa5.35□□□□□ -1.55
UPF3A-210ENST00000493727 LINC01554Q52M75 96 aa5.35□□□□□ -1.55
UPF3A-210ENST00000493727 KRTAP19-8Q3LI54 63 aa5.34□□□□□ -1.55
UPF3A-210ENST00000493727 MT1BP07438 61 aa5.33□□□□□ -1.56
UPF3A-210ENST00000493727 KRTAP13-4Q3LI77 160 aa5.32□□□□□ -1.56
UPF3A-210ENST00000493727 KRTAP9-6A8MVA2 160 aa5.31□□□□□ -1.56
UPF3A-210ENST00000493727 SPATA8Q6RVD6 105 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms