RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 Q1T7F1 81 aa8.03□□□□□ -1.12
SYNE1-227ENST00000489156 V9GYY9 64 aa8.03□□□□□ -1.12
SYNE1-227ENST00000489156 KRTAP19-2Q3LHN2 52 aa7.99□□□□□ -1.13
SYNE1-227ENST00000489156 SPTSSBQ8NFR3 76 aa7.99□□□□□ -1.13
SYNE1-227ENST00000489156 H1FX-AS1Q4G0G2 97 aa7.97□□□□□ -1.13
SYNE1-227ENST00000489156 FAT4Q6V0I7 4981 aa7.97□□□□□ -1.13
SYNE1-227ENST00000489156 LCE2CQ5TA81 110 aa7.94□□□□□ -1.14
SYNE1-227ENST00000489156 LINC01558Q9Y6Z2 57 aa7.94□□□□□ -1.14
SYNE1-227ENST00000489156 S4R3F8 94 aa7.9□□□□□ -1.14
SYNE1-227ENST00000489156 LCE2DQ5TA82 110 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-227ENST00000489156 LCA10Q71F78 164 aa7.88□□□□□ -1.15
SYNE1-227ENST00000489156 KRTAP3-3Q9BYR6 98 aa7.85□□□□□ -1.15
SYNE1-227ENST00000489156 PSPHP1O15172 72 aa7.83□□□□□ -1.16
SYNE1-227ENST00000489156 PRR15LQ9BU68 103 aa7.83□□□□□ -1.16
SYNE1-227ENST00000489156 FLGP20930 4061 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-227ENST00000489156 A0A1B0GU69 56 aa7.8□□□□□ -1.16
SYNE1-227ENST00000489156 MT1HP80294 61 aa7.8□□□□□ -1.16
SYNE1-227ENST00000489156 LCE2AQ5TA79 106 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-227ENST00000489156 Q5VV11 94 aa7.78□□□□□ -1.16
SYNE1-227ENST00000489156 SEC61GP60059 68 aa7.77□□□□□ -1.17
SYNE1-227ENST00000489156 CSAG1Q6PB30 78 aa7.75□□□□□ -1.17
SYNE1-227ENST00000489156 M0R2T5 61 aa7.71□□□□□ -1.18
SYNE1-227ENST00000489156 PRO0628Q9UI54 55 aa7.68□□□□□ -1.18
SYNE1-227ENST00000489156 A6NED7 52 aa7.62□□□□□ -1.19
SYNE1-227ENST00000489156 H0YAA0 97 aa7.61□□□□□ -1.19
SYNE1-227ENST00000489156 UQCR11O14957 56 aa7.59□□□□□ -1.19
SYNE1-227ENST00000489156 KRTAP10-6P60371 365 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-227ENST00000489156 KRTAP3-2Q9BYR7 98 aa7.58□□□□□ -1.2
SYNE1-227ENST00000489156 A0A1B0GU33 70 aa7.55□□□□□ -1.2
SYNE1-227ENST00000489156 LORP23490 312 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-227ENST00000489156 ADM2Q7Z4H4 148 aa7.54□□□□□ -1.2
SYNE1-227ENST00000489156 BRK1Q8WUW1 75 aa7.54□□□□□ -1.2
SYNE1-227ENST00000489156 CDC42SE1Q9NRR8 79 aa7.51□□□□□ -1.21
SYNE1-227ENST00000489156 P0C880 135 aa7.49□□□□□ -1.21
SYNE1-227ENST00000489156 SPATA8Q6RVD6 105 aa7.49□□□□□ -1.21
SYNE1-227ENST00000489156 MIR22HGQ0VDD5 57 aa7.48□□□□□ -1.21
SYNE1-227ENST00000489156 KRTAP9-8Q9BYQ0 159 aa7.46□□□□□ -1.22
SYNE1-227ENST00000489156 MT2AP02795 61 aa7.4□□□□□ -1.23
SYNE1-227ENST00000489156 A8MU10 97 aa7.39□□□□□ -1.23
SYNE1-227ENST00000489156 M0QZ58 72 aa7.38□□□□□ -1.23
SYNE1-227ENST00000489156 MT1FP04733 61 aa7.35□□□□□ -1.23
SYNE1-227ENST00000489156 KRTAP10-10P60014 251 aa7.34□□□□□ -1.23
SYNE1-227ENST00000489156 KRTAP13-4Q3LI77 160 aa7.34□□□□□ -1.23
SYNE1-227ENST00000489156 R4GN34 69 aa7.3□□□□□ -1.24
SYNE1-227ENST00000489156 CRIPTQ9P021 101 aa7.28□□□□□ -1.24
SYNE1-227ENST00000489156 PMAIP1Q13794 54 aa7.27□□□□□ -1.25
SYNE1-227ENST00000489156 KRTAP9-3Q9BYQ3 159 aa7.21□□□□□ -1.26
SYNE1-227ENST00000489156 A0A0D9SG42 100 aa7.2□□□□□ -1.26
SYNE1-227ENST00000489156 K7ERS5 55 aa7.17□□□□□ -1.26
SYNE1-227ENST00000489156 KRTAP9-2Q9BYQ4 174 aa7.16□□□□□ -1.26
SYNE1-227ENST00000489156 LINC01554Q52M75 96 aa7.12□□□□□ -1.27
SYNE1-227ENST00000489156 A6NN06 94 aa7.1□□□□□ -1.27
SYNE1-227ENST00000489156 KRTAP12-1P59990 96 aa7.09□□□□□ -1.27
SYNE1-227ENST00000489156 SPRR2GQ9BYE4 73 aa7.09□□□□□ -1.28
SYNE1-227ENST00000489156 LCE2BO14633 110 aa7.08□□□□□ -1.28
SYNE1-227ENST00000489156 KRTAP19-1Q8IUB9 90 aa7.07□□□□□ -1.28
SYNE1-227ENST00000489156 KRTAP12-2P59991 146 aa7.06□□□□□ -1.28
SYNE1-227ENST00000489156 SPINT4Q6UDR6 99 aa7.05□□□□□ -1.28
SYNE1-227ENST00000489156 USH2AO75445 5202 aa6.99□□□□□ -1.29
SYNE1-227ENST00000489156 FSIP2Q5CZC0 6907 aa6.99□□□□□ -1.29
SYNE1-227ENST00000489156 KTN1-AS1Q86SY8 53 aa6.96□□□□□ -1.3
SYNE1-227ENST00000489156 LOC100996750A0A140TA64 210 aa6.92□□□□□ -1.3
SYNE1-227ENST00000489156 KRTAP4-6Q9BYQ5 205 aa6.92□□□□□ -1.3
SYNE1-227ENST00000489156 KRTAP19-8Q3LI54 63 aa6.91□□□□□ -1.3
SYNE1-227ENST00000489156 MT1BP07438 61 aa6.87□□□□□ -1.31
SYNE1-227ENST00000489156 PLAC4Q8WY50 150 aa6.85□□□□□ -1.31
SYNE1-227ENST00000489156 ROMO1P60602 79 aa6.85□□□□□ -1.31
SYNE1-227ENST00000489156 CRCT1Q9UGL9 99 aa6.84□□□□□ -1.31
SYNE1-227ENST00000489156 CAMK2N1Q7Z7J9 78 aa6.83□□□□□ -1.32
SYNE1-227ENST00000489156 SSPOA2VEC9 5147 aa6.83□□□□□ -1.32
SYNE1-227ENST00000489156 H3BS24 57 aa6.78□□□□□ -1.32
SYNE1-227ENST00000489156 KRTAP9-6A0A140TA67 174 aa6.75□□□□□ -1.33
SYNE1-227ENST00000489156 KRTAP19-6Q3LI70 58 aa6.72□□□□□ -1.33
SYNE1-227ENST00000489156 C10orf95Q9H7T3 257 aa6.7□□□□□ -1.34
SYNE1-227ENST00000489156 PRAC1Q96KF2 57 aa6.63□□□□□ -1.35
SYNE1-227ENST00000489156 FCGBPQ9Y6R7 5405 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-227ENST00000489156 KRTAP10-5P60370 271 aa6.6□□□□□ -1.35
SYNE1-227ENST00000489156 KRTAP25-1Q3LHN0 102 aa6.58□□□□□ -1.36
SYNE1-227ENST00000489156 MT1XP80297 61 aa6.56□□□□□ -1.36
SYNE1-227ENST00000489156 PRO2289Q9P1D8 64 aa6.53□□□□□ -1.36
SYNE1-227ENST00000489156 TNP1P09430 55 aa6.53□□□□□ -1.36
SYNE1-227ENST00000489156 KRTAP23-1A1A580 65 aa6.39□□□□□ -1.39
SYNE1-227ENST00000489156 PP632Q6XCG6 107 aa6.39□□□□□ -1.39
SYNE1-227ENST00000489156 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-227ENST00000489156 MACF1Q9UPN3 7388 aaKnown RBP6.31□□□□□ -1.4
SYNE1-227ENST00000489156 KRTAP10-7P60409 375 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-227ENST00000489156 KRTAP10-12P60413 245 aa6.24□□□□□ -1.41
SYNE1-227ENST00000489156 KMT2DO14686 5537 aa6.23□□□□□ -1.41
SYNE1-227ENST00000489156 SYNE2Q8WXH0 6885 aaKnown RBP6.2□□□□□ -1.42
SYNE1-227ENST00000489156 LCE3AQ5TA76 89 aa6.19□□□□□ -1.42
SYNE1-227ENST00000489156 KRTAP4-8A0A0G2JLE6 195 aa6.16□□□□□ -1.42
SYNE1-227ENST00000489156 KRTAP4-8Q9BYQ9 185 aa6.16□□□□□ -1.42
SYNE1-227ENST00000489156 KRTAP9-7A8MTY7 169 aa6.13□□□□□ -1.43
SYNE1-227ENST00000489156 KRTAP8-1Q8IUC2 63 aa6.12□□□□□ -1.43
SYNE1-227ENST00000489156 KRTAP6-3Q3LI67 103 aa6.07□□□□□ -1.44
SYNE1-227ENST00000489156 A0A0A0MQY5 61 aa6.02□□□□□ -1.45
SYNE1-227ENST00000489156 KRTAP5-9P26371 169 aa5.98□□□□□ -1.45
SYNE1-227ENST00000489156 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
SYNE1-227ENST00000489156 SPRR2FQ96RM1 72 aa5.96□□□□□ -1.46
SYNE1-227ENST00000489156 KRTAP19-5Q3LI72 72 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms