RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 TRAV7A0A075B6U4 112 aa3.21□□□□□ -1.9
PTPRE-209ENST00000487428 C1orf64Q8NEQ6 169 aa3.21□□□□□ -1.9
PTPRE-209ENST00000487428 SMIM26A0A096LP01 95 aa3.2□□□□□ -1.9
PTPRE-209ENST00000487428 NDUFC1O43677 76 aa3.2□□□□□ -1.9
PTPRE-209ENST00000487428 LINC00208Q96KT6 92 aa3.2□□□□□ -1.9
PTPRE-209ENST00000487428 KRTAP9-2Q9BYQ4 174 aa3.2□□□□□ -1.9
PTPRE-209ENST00000487428 MT2AP02795 61 aa3.18□□□□□ -1.9
PTPRE-209ENST00000487428 KLKP1Q107X0 134 aa3.16□□□□□ -1.9
PTPRE-209ENST00000487428 CSAG1Q6PB30 78 aa3.16□□□□□ -1.9
PTPRE-209ENST00000487428 S4R3F8 94 aa3.16□□□□□ -1.9
PTPRE-209ENST00000487428 DMAC1Q96GE9 116 aa3.15□□□□□ -1.91
PTPRE-209ENST00000487428 KRTAP3-3Q9BYR6 98 aa3.15□□□□□ -1.91
PTPRE-209ENST00000487428 MT1FP04733 61 aa3.14□□□□□ -1.91
PTPRE-209ENST00000487428 LCA10Q71F78 164 aa3.14□□□□□ -1.91
PTPRE-209ENST00000487428 KRTAP9-3Q9BYQ3 159 aa3.14□□□□□ -1.91
PTPRE-209ENST00000487428 H0YAA0 97 aa3.13□□□□□ -1.91
PTPRE-209ENST00000487428 SPANXA2-OT1Q8N9U9 137 aa3.12□□□□□ -1.91
PTPRE-209ENST00000487428 KRTAP10-10P60014 251 aa3.11□□□□□ -1.91
PTPRE-209ENST00000487428 PMAIP1Q13794 54 aa3.11□□□□□ -1.91
PTPRE-209ENST00000487428 BRK1Q8WUW1 75 aa3.11□□□□□ -1.91
PTPRE-209ENST00000487428 H7BZZ5 65 aa3.1□□□□□ -1.91
PTPRE-209ENST00000487428 C20orf197Q8N268 126 aa3.1□□□□□ -1.91
PTPRE-209ENST00000487428 CRIPTQ9P021 101 aa3.08□□□□□ -1.92
PTPRE-209ENST00000487428 ACYP2P14621 99 aa3.07□□□□□ -1.92
PTPRE-209ENST00000487428 LCE2BO14633 110 aa3.06□□□□□ -1.92
PTPRE-209ENST00000487428 SPRR2GQ9BYE4 73 aa3.06□□□□□ -1.92
PTPRE-209ENST00000487428 CYSTM1Q9H1C7 97 aa3.06□□□□□ -1.92
PTPRE-209ENST00000487428 KRTAP9-6A0A140TA67 174 aa3.05□□□□□ -1.92
PTPRE-209ENST00000487428 CRCT1Q9UGL9 99 aa3.05□□□□□ -1.92
PTPRE-209ENST00000487428 SNURFQ9Y675 71 aa3.04□□□□□ -1.92
PTPRE-209ENST00000487428 Q1T7F1 81 aa3.03□□□□□ -1.92
PTPRE-209ENST00000487428 KRTAP19-1Q8IUB9 90 aa3.03□□□□□ -1.92
PTPRE-209ENST00000487428 KRTAP19-8Q3LI54 63 aa3.02□□□□□ -1.93
PTPRE-209ENST00000487428 SPTSSBQ8NFR3 76 aa3.02□□□□□ -1.93
PTPRE-209ENST00000487428 KTN1-AS1Q86SY8 53 aa3□□□□□ -1.93
PTPRE-209ENST00000487428 KRTAP19-6Q3LI70 58 aa2.99□□□□□ -1.93
PTPRE-209ENST00000487428 ADM2Q7Z4H4 148 aa2.97□□□□□ -1.93
PTPRE-209ENST00000487428 KRTAP3-2Q9BYR7 98 aa2.97□□□□□ -1.93
PTPRE-209ENST00000487428 USH2AO75445 5202 aa2.97□□□□□ -1.93
PTPRE-209ENST00000487428 FSIP2Q5CZC0 6907 aa2.96□□□□□ -1.94
PTPRE-209ENST00000487428 CHKB-CPT1BH3BT56 60 aa2.95□□□□□ -1.94
PTPRE-209ENST00000487428 MT1BP07438 61 aa2.95□□□□□ -1.94
PTPRE-209ENST00000487428 Q5VV11 94 aa2.94□□□□□ -1.94
PTPRE-209ENST00000487428 COA5Q86WW8 74 aa2.94□□□□□ -1.94
PTPRE-209ENST00000487428 SSPOA2VEC9 5147 aa2.93□□□□□ -1.94
PTPRE-209ENST00000487428 P0C880 135 aa2.93□□□□□ -1.94
PTPRE-209ENST00000487428 M0QZ58 72 aa2.91□□□□□ -1.94
PTPRE-209ENST00000487428 R4GN34 69 aa2.91□□□□□ -1.94
PTPRE-209ENST00000487428 A6NN06 94 aa2.89□□□□□ -1.95
PTPRE-209ENST00000487428 CDC42SE1Q9NRR8 79 aa2.89□□□□□ -1.95
PTPRE-209ENST00000487428 PSPHP1O15172 72 aa2.88□□□□□ -1.95
PTPRE-209ENST00000487428 KRTAP10-5P60370 271 aa2.88□□□□□ -1.95
PTPRE-209ENST00000487428 FCGBPQ9Y6R7 5405 aaPredicted RBP2.88□□□□□ -1.95
PTPRE-209ENST00000487428 A6NED7 52 aa2.86□□□□□ -1.95
PTPRE-209ENST00000487428 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.84□□□□□ -1.95
PTPRE-209ENST00000487428 PRR15LQ9BU68 103 aa2.84□□□□□ -1.95
PTPRE-209ENST00000487428 PLAC4Q8WY50 150 aa2.83□□□□□ -1.96
PTPRE-209ENST00000487428 PRO2289Q9P1D8 64 aa2.82□□□□□ -1.96
PTPRE-209ENST00000487428 LINC01558Q9Y6Z2 57 aa2.81□□□□□ -1.96
PTPRE-209ENST00000487428 H3BS24 57 aa2.8□□□□□ -1.96
PTPRE-209ENST00000487428 MT1XP80297 61 aa2.8□□□□□ -1.96
PTPRE-209ENST00000487428 LINC01554Q52M75 96 aa2.8□□□□□ -1.96
PTPRE-209ENST00000487428 A0A1B0GU33 70 aa2.79□□□□□ -1.96
PTPRE-209ENST00000487428 A0A1B0GU69 56 aa2.79□□□□□ -1.96
PTPRE-209ENST00000487428 KRTAP13-4Q3LI77 160 aa2.79□□□□□ -1.96
PTPRE-209ENST00000487428 KRTAP12-2P59991 146 aa2.77□□□□□ -1.97
PTPRE-209ENST00000487428 KRTAP9-7A8MTY7 169 aa2.76□□□□□ -1.97
PTPRE-209ENST00000487428 KRTAP6-3Q3LI67 103 aa2.75□□□□□ -1.97
PTPRE-209ENST00000487428 MACF1Q9UPN3 7388 aaKnown RBP2.73□□□□□ -1.97
PTPRE-209ENST00000487428 KRTAP5-9P26371 169 aa2.71□□□□□ -1.98
PTPRE-209ENST00000487428 A8MU10 97 aa2.7□□□□□ -1.98
PTPRE-209ENST00000487428 KRTAP12-1P59990 96 aa2.7□□□□□ -1.98
PTPRE-209ENST00000487428 KRTAP10-12P60413 245 aa2.7□□□□□ -1.98
PTPRE-209ENST00000487428 SPATA8Q6RVD6 105 aa2.7□□□□□ -1.98
PTPRE-209ENST00000487428 UQCR11O14957 56 aa2.69□□□□□ -1.98
PTPRE-209ENST00000487428 CAMK2N1Q7Z7J9 78 aa2.66□□□□□ -1.98
PTPRE-209ENST00000487428 A0A0D9SG42 100 aa2.65□□□□□ -1.99
PTPRE-209ENST00000487428 SYNE2Q8WXH0 6885 aaKnown RBP2.64□□□□□ -1.99
PTPRE-209ENST00000487428 MIR22HGQ0VDD5 57 aa2.64□□□□□ -1.99
PTPRE-209ENST00000487428 PRAC1Q96KF2 57 aa2.64□□□□□ -1.99
PTPRE-209ENST00000487428 KRTAP10-7P60409 375 aaPredicted RBP2.63□□□□□ -1.99
PTPRE-209ENST00000487428 SPINT4Q6UDR6 99 aa2.62□□□□□ -1.99
PTPRE-209ENST00000487428 KRTAP8-1Q8IUC2 63 aa2.6□□□□□ -1.99
PTPRE-209ENST00000487428 ROMO1P60602 79 aa2.59□□□□□ -1.99
PTPRE-209ENST00000487428 KRTAP4-8A0A0G2JLE6 195 aa2.58□□□□□ -2
PTPRE-209ENST00000487428 KRTAP4-8Q9BYQ9 185 aa2.58□□□□□ -2
PTPRE-209ENST00000487428 KMT2DO14686 5537 aa2.58□□□□□ -2
PTPRE-209ENST00000487428 KRTAP25-1Q3LHN0 102 aa2.57□□□□□ -2
PTPRE-209ENST00000487428 K7ERS5 55 aa2.56□□□□□ -2
PTPRE-209ENST00000487428 SPRR2FQ96RM1 72 aa2.55□□□□□ -2
PTPRE-209ENST00000487428 C10orf95Q9H7T3 257 aa2.55□□□□□ -2
PTPRE-209ENST00000487428 MUC12Q9UKN1 5478 aa2.54□□□□□ -2
PTPRE-209ENST00000487428 TNP1P09430 55 aa2.54□□□□□ -2
PTPRE-209ENST00000487428 LCE1AQ5T7P2 110 aa2.53□□□□□ -2
PTPRE-209ENST00000487428 KRTAP19-7Q3SYF9 63 aa2.51□□□□□ -2.01
PTPRE-209ENST00000487428 NEBP20929 6669 aa2.51□□□□□ -2.01
PTPRE-209ENST00000487428 KRTAP23-1A1A580 65 aa2.49□□□□□ -2.01
PTPRE-209ENST00000487428 SPRR2EP22531 72 aa2.48□□□□□ -2.01
PTPRE-209ENST00000487428 SPRR2BP35325 72 aa2.48□□□□□ -2.01
PTPRE-209ENST00000487428 SPRR2AP35326 72 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms