RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 V9GYY9 64 aa7.2□□□□□ -1.26
CUX1-209ENST00000487284 LINC01558Q9Y6Z2 57 aa7.15□□□□□ -1.27
CUX1-209ENST00000487284 RBM12B-AS1Q9P1G2 102 aa7.12□□□□□ -1.27
CUX1-209ENST00000487284 SPTSSBQ8NFR3 76 aa7.12□□□□□ -1.27
CUX1-209ENST00000487284 H1FX-AS1Q4G0G2 97 aa7.1□□□□□ -1.27
CUX1-209ENST00000487284 PSPHP1O15172 72 aa7.08□□□□□ -1.28
CUX1-209ENST00000487284 KRTAP19-2Q3LHN2 52 aa7.08□□□□□ -1.28
CUX1-209ENST00000487284 PRR15LQ9BU68 103 aa7.08□□□□□ -1.28
CUX1-209ENST00000487284 FAT4Q6V0I7 4981 aa7.05□□□□□ -1.28
CUX1-209ENST00000487284 Q5VV11 94 aa7.05□□□□□ -1.28
CUX1-209ENST00000487284 S4R3F8 94 aa7.05□□□□□ -1.28
CUX1-209ENST00000487284 LCA10Q71F78 164 aa7.04□□□□□ -1.28
CUX1-209ENST00000487284 KRTAP3-3Q9BYR6 98 aa7.03□□□□□ -1.28
CUX1-209ENST00000487284 LCE2CQ5TA81 110 aa7.02□□□□□ -1.29
CUX1-209ENST00000487284 A0A1B0GU69 56 aa6.99□□□□□ -1.29
CUX1-209ENST00000487284 FLGP20930 4061 aaPredicted RBP6.97□□□□□ -1.29
CUX1-209ENST00000487284 SEC61GP60059 68 aa6.92□□□□□ -1.3
CUX1-209ENST00000487284 MT1HP80294 61 aa6.89□□□□□ -1.31
CUX1-209ENST00000487284 CSAG1Q6PB30 78 aa6.88□□□□□ -1.31
CUX1-209ENST00000487284 A6NED7 52 aa6.86□□□□□ -1.31
CUX1-209ENST00000487284 BRK1Q8WUW1 75 aa6.84□□□□□ -1.31
CUX1-209ENST00000487284 LCE2AQ5TA79 106 aaPredicted RBP6.82□□□□□ -1.32
CUX1-209ENST00000487284 KRTAP3-2Q9BYR7 98 aa6.81□□□□□ -1.32
CUX1-209ENST00000487284 UQCR11O14957 56 aa6.8□□□□□ -1.32
CUX1-209ENST00000487284 KRTAP10-6P60371 365 aaPredicted RBP6.8□□□□□ -1.32
CUX1-209ENST00000487284 M0R2T5 61 aa6.79□□□□□ -1.32
CUX1-209ENST00000487284 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
CUX1-209ENST00000487284 H0YAA0 97 aa6.78□□□□□ -1.32
CUX1-209ENST00000487284 A0A1B0GU33 70 aa6.77□□□□□ -1.33
CUX1-209ENST00000487284 A8MU10 97 aa6.74□□□□□ -1.33
CUX1-209ENST00000487284 SPATA8Q6RVD6 105 aa6.74□□□□□ -1.33
CUX1-209ENST00000487284 ADM2Q7Z4H4 148 aa6.74□□□□□ -1.33
CUX1-209ENST00000487284 PRO0628Q9UI54 55 aa6.74□□□□□ -1.33
CUX1-209ENST00000487284 P0C880 135 aa6.73□□□□□ -1.33
CUX1-209ENST00000487284 MIR22HGQ0VDD5 57 aa6.73□□□□□ -1.33
CUX1-209ENST00000487284 LORP23490 312 aaPredicted RBP6.65□□□□□ -1.35
CUX1-209ENST00000487284 KRTAP13-4Q3LI77 160 aa6.63□□□□□ -1.35
CUX1-209ENST00000487284 KRTAP9-8Q9BYQ0 159 aa6.6□□□□□ -1.35
CUX1-209ENST00000487284 KRTAP9-2Q9BYQ4 174 aa6.59□□□□□ -1.35
CUX1-209ENST00000487284 M0QZ58 72 aa6.57□□□□□ -1.36
CUX1-209ENST00000487284 MT2AP02795 61 aa6.57□□□□□ -1.36
CUX1-209ENST00000487284 MT1FP04733 61 aa6.52□□□□□ -1.37
CUX1-209ENST00000487284 R4GN34 69 aa6.49□□□□□ -1.37
CUX1-209ENST00000487284 KRTAP10-10P60014 251 aa6.48□□□□□ -1.37
CUX1-209ENST00000487284 A0A0D9SG42 100 aa6.47□□□□□ -1.37
CUX1-209ENST00000487284 PMAIP1Q13794 54 aa6.47□□□□□ -1.37
CUX1-209ENST00000487284 A6NN06 94 aa6.45□□□□□ -1.38
CUX1-209ENST00000487284 CRIPTQ9P021 101 aa6.44□□□□□ -1.38
CUX1-209ENST00000487284 K7ERS5 55 aa6.4□□□□□ -1.39
CUX1-209ENST00000487284 KRTAP9-6A0A140TA67 174 aa6.39□□□□□ -1.39
CUX1-209ENST00000487284 KRTAP12-1P59990 96 aa6.38□□□□□ -1.39
CUX1-209ENST00000487284 KRTAP9-3Q9BYQ3 159 aa6.37□□□□□ -1.39
CUX1-209ENST00000487284 LINC01554Q52M75 96 aa6.35□□□□□ -1.39
CUX1-209ENST00000487284 KRTAP12-2P59991 146 aa6.35□□□□□ -1.39
CUX1-209ENST00000487284 SPINT4Q6UDR6 99 aa6.31□□□□□ -1.4
CUX1-209ENST00000487284 SPRR2GQ9BYE4 73 aa6.31□□□□□ -1.4
CUX1-209ENST00000487284 LCE2DQ5TA82 110 aaPredicted RBP6.3□□□□□ -1.4
CUX1-209ENST00000487284 KRTAP19-1Q8IUB9 90 aa6.3□□□□□ -1.4
CUX1-209ENST00000487284 FSIP2Q5CZC0 6907 aa6.28□□□□□ -1.4
CUX1-209ENST00000487284 LCE2BO14633 110 aa6.24□□□□□ -1.41
CUX1-209ENST00000487284 KTN1-AS1Q86SY8 53 aa6.24□□□□□ -1.41
CUX1-209ENST00000487284 CRCT1Q9UGL9 99 aa6.18□□□□□ -1.42
CUX1-209ENST00000487284 USH2AO75445 5202 aa6.17□□□□□ -1.42
CUX1-209ENST00000487284 ROMO1P60602 79 aa6.16□□□□□ -1.42
CUX1-209ENST00000487284 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.42
CUX1-209ENST00000487284 MT1BP07438 61 aa6.11□□□□□ -1.43
CUX1-209ENST00000487284 CAMK2N1Q7Z7J9 78 aa6.08□□□□□ -1.44
CUX1-209ENST00000487284 PLAC4Q8WY50 150 aa6.06□□□□□ -1.44
CUX1-209ENST00000487284 PRAC1Q96KF2 57 aa6.06□□□□□ -1.44
CUX1-209ENST00000487284 SSPOA2VEC9 5147 aa6.03□□□□□ -1.44
CUX1-209ENST00000487284 C10orf95Q9H7T3 257 aa6.03□□□□□ -1.44
CUX1-209ENST00000487284 KRTAP25-1Q3LHN0 102 aa5.92□□□□□ -1.46
CUX1-209ENST00000487284 KRTAP19-6Q3LI70 58 aa5.91□□□□□ -1.46
CUX1-209ENST00000487284 MT1XP80297 61 aa5.85□□□□□ -1.47
CUX1-209ENST00000487284 KRTAP10-5P60370 271 aa5.84□□□□□ -1.47
CUX1-209ENST00000487284 TNP1P09430 55 aa5.81□□□□□ -1.48
CUX1-209ENST00000487284 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.79□□□□□ -1.48
CUX1-209ENST00000487284 PRO2289Q9P1D8 64 aa5.79□□□□□ -1.48
CUX1-209ENST00000487284 FCGBPQ9Y6R7 5405 aaPredicted RBP5.79□□□□□ -1.48
CUX1-209ENST00000487284 KRTAP9-7A8MTY7 169 aa5.74□□□□□ -1.49
CUX1-209ENST00000487284 KRTAP23-1A1A580 65 aa5.69□□□□□ -1.5
CUX1-209ENST00000487284 PP632Q6XCG6 107 aa5.69□□□□□ -1.5
CUX1-209ENST00000487284 KRTAP10-7P60409 375 aaPredicted RBP5.61□□□□□ -1.51
CUX1-209ENST00000487284 MACF1Q9UPN3 7388 aaKnown RBP5.59□□□□□ -1.52
CUX1-209ENST00000487284 KRTAP10-12P60413 245 aa5.57□□□□□ -1.52
CUX1-209ENST00000487284 LCE3AQ5TA76 89 aa5.57□□□□□ -1.52
CUX1-209ENST00000487284 SYNE2Q8WXH0 6885 aaKnown RBP5.54□□□□□ -1.52
CUX1-209ENST00000487284 KMT2DO14686 5537 aa5.51□□□□□ -1.53
CUX1-209ENST00000487284 KRTAP4-8A0A0G2JLE6 195 aa5.47□□□□□ -1.53
CUX1-209ENST00000487284 KRTAP8-1Q8IUC2 63 aa5.47□□□□□ -1.53
CUX1-209ENST00000487284 KRTAP4-8Q9BYQ9 185 aa5.47□□□□□ -1.53
CUX1-209ENST00000487284 KRTAP12-3P60328 96 aa5.34□□□□□ -1.55
CUX1-209ENST00000487284 KRTAP6-3Q3LI67 103 aa5.33□□□□□ -1.56
CUX1-209ENST00000487284 MUC12Q9UKN1 5478 aa5.29□□□□□ -1.56
CUX1-209ENST00000487284 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
CUX1-209ENST00000487284 KRTAP5-9P26371 169 aa5.25□□□□□ -1.57
CUX1-209ENST00000487284 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
CUX1-209ENST00000487284 SPRR2FQ96RM1 72 aa5.25□□□□□ -1.57
CUX1-209ENST00000487284 KRTAP19-7Q3SYF9 63 aa5.23□□□□□ -1.57
CUX1-209ENST00000487284 NEBP20929 6669 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms