RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 LCA10Q71F78 164 aa8.44□□□□□ -1.06
PRPF40A-209ENST00000486100 CYP4F30PQ9H0H9 118 aa8.42□□□□□ -1.06
PRPF40A-209ENST00000486100 TRAV7A0A075B6U4 112 aa8.41□□□□□ -1.06
PRPF40A-209ENST00000486100 MACF1Q9UPN3 7388 aaKnown RBP8.4□□□□□ -1.06
PRPF40A-209ENST00000486100 H3BPC8 53 aa8.38□□□□□ -1.07
PRPF40A-209ENST00000486100 MP68P56378 58 aa8.38□□□□□ -1.07
PRPF40A-209ENST00000486100 LOC101927531A0A1B0GV80 90 aa8.36□□□□□ -1.07
PRPF40A-209ENST00000486100 H0Y9P7 68 aa8.36□□□□□ -1.07
PRPF40A-209ENST00000486100 SERP2Q8N6R1 65 aa8.34□□□□□ -1.07
PRPF40A-209ENST00000486100 SYNE2Q8WXH0 6885 aaKnown RBP8.34□□□□□ -1.07
PRPF40A-209ENST00000486100 KRTAP3-3Q9BYR6 98 aa8.33□□□□□ -1.08
PRPF40A-209ENST00000486100 SPRR2GQ9BYE4 73 aa8.3□□□□□ -1.08
PRPF40A-209ENST00000486100 LINC00208Q96KT6 92 aa8.27□□□□□ -1.09
PRPF40A-209ENST00000486100 MT1BP07438 61 aa8.26□□□□□ -1.09
PRPF40A-209ENST00000486100 KLKP1Q107X0 134 aa8.26□□□□□ -1.09
PRPF40A-209ENST00000486100 KRTAP19-8Q3LI54 63 aa8.25□□□□□ -1.09
PRPF40A-209ENST00000486100 Q5VV11 94 aa8.25□□□□□ -1.09
PRPF40A-209ENST00000486100 COX7CP15954 63 aa8.24□□□□□ -1.09
PRPF40A-209ENST00000486100 ANAPC13Q9BS18 74 aa8.24□□□□□ -1.09
PRPF40A-209ENST00000486100 KRTAP6-3Q3LI67 103 aa8.2□□□□□ -1.1
PRPF40A-209ENST00000486100 A6NN06 94 aa8.18□□□□□ -1.1
PRPF40A-209ENST00000486100 C20orf197Q8N268 126 aa8.16□□□□□ -1.1
PRPF40A-209ENST00000486100 CRIPTQ9P021 101 aa8.16□□□□□ -1.1
PRPF40A-209ENST00000486100 NDUFC1O43677 76 aa8.15□□□□□ -1.1
PRPF40A-209ENST00000486100 A8MUN3 132 aa8.12□□□□□ -1.11
PRPF40A-209ENST00000486100 H0YAA0 97 aa8.09□□□□□ -1.11
PRPF40A-209ENST00000486100 SNURFQ9Y675 71 aa8.09□□□□□ -1.11
PRPF40A-209ENST00000486100 KRTAP10-5P60370 271 aa8.08□□□□□ -1.12
PRPF40A-209ENST00000486100 SPANXA2-OT1Q8N9U9 137 aa8.04□□□□□ -1.12
PRPF40A-209ENST00000486100 CCDC179H3BU77 68 aa7.99□□□□□ -1.13
PRPF40A-209ENST00000486100 ADM2Q7Z4H4 148 aa7.99□□□□□ -1.13
PRPF40A-209ENST00000486100 DMAC1Q96GE9 116 aa7.97□□□□□ -1.13
PRPF40A-209ENST00000486100 H7BZZ5 65 aa7.96□□□□□ -1.14
PRPF40A-209ENST00000486100 ACYP2P14621 99 aa7.89□□□□□ -1.15
PRPF40A-209ENST00000486100 CYSTM1Q9H1C7 97 aa7.89□□□□□ -1.15
PRPF40A-209ENST00000486100 MUC12Q9UKN1 5478 aa7.89□□□□□ -1.15
PRPF40A-209ENST00000486100 ATP5EP56381 51 aaPredicted RBP7.88□□□□□ -1.15
PRPF40A-209ENST00000486100 PCP4P48539 62 aa7.87□□□□□ -1.15
PRPF40A-209ENST00000486100 TMEM258P61165 79 aa7.84□□□□□ -1.15
PRPF40A-209ENST00000486100 NEBP20929 6669 aa7.83□□□□□ -1.16
PRPF40A-209ENST00000486100 P0C880 135 aa7.8□□□□□ -1.16
PRPF40A-209ENST00000486100 KRTAP5-9P26371 169 aa7.8□□□□□ -1.16
PRPF40A-209ENST00000486100 R4GN34 69 aa7.8□□□□□ -1.16
PRPF40A-209ENST00000486100 PLAC4Q8WY50 150 aa7.78□□□□□ -1.16
PRPF40A-209ENST00000486100 PRO2289Q9P1D8 64 aa7.77□□□□□ -1.17
PRPF40A-209ENST00000486100 SPTSSBQ8NFR3 76 aa7.74□□□□□ -1.17
PRPF40A-209ENST00000486100 KRTAP3-2Q9BYR7 98 aa7.74□□□□□ -1.17
PRPF40A-209ENST00000486100 KMT2DO14686 5537 aa7.74□□□□□ -1.17
PRPF40A-209ENST00000486100 CHKB-CPT1BH3BT56 60 aa7.73□□□□□ -1.17
PRPF40A-209ENST00000486100 MT1XP80297 61 aa7.73□□□□□ -1.17
PRPF40A-209ENST00000486100 M0QZ58 72 aa7.72□□□□□ -1.17
PRPF40A-209ENST00000486100 COA5Q86WW8 74 aa7.7□□□□□ -1.18
PRPF40A-209ENST00000486100 MDN1Q9NU22 5596 aa7.69□□□□□ -1.18
PRPF40A-209ENST00000486100 LINC01554Q52M75 96 aa7.61□□□□□ -1.19
PRPF40A-209ENST00000486100 KRTAP20-1Q3LI63 56 aa7.58□□□□□ -1.2
PRPF40A-209ENST00000486100 SERP1Q9Y6X1 66 aa7.58□□□□□ -1.2
PRPF40A-209ENST00000486100 KRTAP12-2P59991 146 aa7.57□□□□□ -1.2
PRPF40A-209ENST00000486100 SPRR2FQ96RM1 72 aa7.55□□□□□ -1.2
PRPF40A-209ENST00000486100 KRTAP8-1Q8IUC2 63 aa7.52□□□□□ -1.21
PRPF40A-209ENST00000486100 RPS28P62857 69 aaKnown RBP7.46□□□□□ -1.22
PRPF40A-209ENST00000486100 SPRR2EP22531 72 aa7.44□□□□□ -1.22
PRPF40A-209ENST00000486100 SPRR2BP35325 72 aa7.44□□□□□ -1.22
PRPF40A-209ENST00000486100 SPRR2AP35326 72 aa7.44□□□□□ -1.22
PRPF40A-209ENST00000486100 KRTAP4-8A0A0G2JLE6 195 aa7.42□□□□□ -1.22
PRPF40A-209ENST00000486100 SEC61GP60059 68 aa7.42□□□□□ -1.22
PRPF40A-209ENST00000486100 KRTAP4-8Q9BYQ9 185 aa7.42□□□□□ -1.22
PRPF40A-209ENST00000486100 KRTAP2-3P0C7H8 128 aa7.41□□□□□ -1.22
PRPF40A-209ENST00000486100 KRTAP2-4Q9BYR9 128 aa7.41□□□□□ -1.22
PRPF40A-209ENST00000486100 KRTAP10-7P60409 375 aaPredicted RBP7.38□□□□□ -1.23
PRPF40A-209ENST00000486100 KRTAP10-12P60413 245 aa7.35□□□□□ -1.23
PRPF40A-209ENST00000486100 LCE1AQ5T7P2 110 aa7.35□□□□□ -1.23
PRPF40A-209ENST00000486100 V9GYY9 64 aa7.35□□□□□ -1.23
PRPF40A-209ENST00000486100 SMIM26A0A096LP01 95 aa7.34□□□□□ -1.23
PRPF40A-209ENST00000486100 LINC01558Q9Y6Z2 57 aa7.34□□□□□ -1.23
PRPF40A-209ENST00000486100 PRR15LQ9BU68 103 aa7.33□□□□□ -1.24
PRPF40A-209ENST00000486100 A0A1B0GU69 56 aa7.32□□□□□ -1.24
PRPF40A-209ENST00000486100 Q1T7F1 81 aa7.27□□□□□ -1.25
PRPF40A-209ENST00000486100 KRTAP13-4Q3LI77 160 aa7.26□□□□□ -1.25
PRPF40A-209ENST00000486100 SPRR2DP22532 72 aa7.2□□□□□ -1.26
PRPF40A-209ENST00000486100 A0A1B0GU33 70 aa7.19□□□□□ -1.26
PRPF40A-209ENST00000486100 KRTAP2-2Q9BYT5 123 aa7.18□□□□□ -1.26
PRPF40A-209ENST00000486100 KRTAP2-1Q9BYU5 128 aa7.18□□□□□ -1.26
PRPF40A-209ENST00000486100 CAMK2N1Q7Z7J9 78 aa7.16□□□□□ -1.26
PRPF40A-209ENST00000486100 UQCR11O14957 56 aa7.07□□□□□ -1.28
PRPF40A-209ENST00000486100 PSPHP1O15172 72 aa7.06□□□□□ -1.28
PRPF40A-209ENST00000486100 A0A0D9SG42 100 aa7.04□□□□□ -1.28
PRPF40A-209ENST00000486100 SPATA8Q6RVD6 105 aa7.02□□□□□ -1.29
PRPF40A-209ENST00000486100 LCE3BQ5TA77 95 aa7.01□□□□□ -1.29
PRPF40A-209ENST00000486100 SPINT4Q6UDR6 99 aa6.96□□□□□ -1.3
PRPF40A-209ENST00000486100 MIR22HGQ0VDD5 57 aa6.93□□□□□ -1.3
PRPF40A-209ENST00000486100 KRTAP19-7Q3SYF9 63 aa6.92□□□□□ -1.3
PRPF40A-209ENST00000486100 A6NED7 52 aa6.91□□□□□ -1.3
PRPF40A-209ENST00000486100 KRTAP12-1P59990 96 aa6.9□□□□□ -1.3
PRPF40A-209ENST00000486100 MT1EP04732 61 aa6.85□□□□□ -1.31
PRPF40A-209ENST00000486100 LCE5AQ5TCM9 118 aa6.84□□□□□ -1.31
PRPF40A-209ENST00000486100 A8MU10 97 aa6.83□□□□□ -1.32
PRPF40A-209ENST00000486100 KRTAP19-3Q7Z4W3 81 aa6.81□□□□□ -1.32
PRPF40A-209ENST00000486100 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
PRPF40A-209ENST00000486100 K7ERS5 55 aa6.77□□□□□ -1.33
PRPF40A-209ENST00000486100 KRTAP19-5Q3LI72 72 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 160.1 ms