RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ATOX1O00244 68 aa7.62□□□□□ -1.19
UPF3A-208ENST00000484246 C1orf64Q8NEQ6 169 aa7.59□□□□□ -1.19
UPF3A-208ENST00000484246 OCR1Q9BZK8 76 aa7.59□□□□□ -1.19
UPF3A-208ENST00000484246 H0Y9P7 68 aa7.58□□□□□ -1.2
UPF3A-208ENST00000484246 K7ERU9 68 aa7.57□□□□□ -1.2
UPF3A-208ENST00000484246 LCE5AQ5TCM9 118 aa7.57□□□□□ -1.2
UPF3A-208ENST00000484246 KRTAP10-10P60014 251 aa7.56□□□□□ -1.2
UPF3A-208ENST00000484246 SSPOA2VEC9 5147 aa7.55□□□□□ -1.2
UPF3A-208ENST00000484246 USH2AO75445 5202 aa7.55□□□□□ -1.2
UPF3A-208ENST00000484246 IMUPQ9GZP8 106 aa7.53□□□□□ -1.2
UPF3A-208ENST00000484246 S4R3F8 94 aa7.51□□□□□ -1.21
UPF3A-208ENST00000484246 MP68P56378 58 aa7.49□□□□□ -1.21
UPF3A-208ENST00000484246 C5orf47Q569G3 176 aa7.48□□□□□ -1.21
UPF3A-208ENST00000484246 KRTAP23-1A1A580 65 aa7.47□□□□□ -1.21
UPF3A-208ENST00000484246 LINC00208Q96KT6 92 aa7.47□□□□□ -1.21
UPF3A-208ENST00000484246 H3BPC8 53 aa7.46□□□□□ -1.22
UPF3A-208ENST00000484246 MT-ATP8P03928 68 aa7.45□□□□□ -1.22
UPF3A-208ENST00000484246 LCA10Q71F78 164 aa7.45□□□□□ -1.22
UPF3A-208ENST00000484246 CSAG1Q6PB30 78 aa7.43□□□□□ -1.22
UPF3A-208ENST00000484246 KRTAP4-11Q9BYQ6 195 aa7.43□□□□□ -1.22
UPF3A-208ENST00000484246 A8MUN3 132 aa7.42□□□□□ -1.22
UPF3A-208ENST00000484246 SCGB1A1P11684 91 aa7.42□□□□□ -1.22
UPF3A-208ENST00000484246 FCGBPQ9Y6R7 5405 aaPredicted RBP7.41□□□□□ -1.22
UPF3A-208ENST00000484246 KLKP1Q107X0 134 aa7.4□□□□□ -1.22
UPF3A-208ENST00000484246 KRTAP4-2Q9BYR5 136 aa7.4□□□□□ -1.22
UPF3A-208ENST00000484246 SMIM20Q8N5G0 67 aa7.36□□□□□ -1.23
UPF3A-208ENST00000484246 SYNE2Q8WXH0 6885 aaKnown RBP7.36□□□□□ -1.23
UPF3A-208ENST00000484246 FAM236AA0A1B0GUQ0 79 aa7.34□□□□□ -1.23
UPF3A-208ENST00000484246 FAM236BA0A1B0GV22 79 aa7.34□□□□□ -1.23
UPF3A-208ENST00000484246 TRAV7A0A075B6U4 112 aa7.32□□□□□ -1.24
UPF3A-208ENST00000484246 MACF1Q9UPN3 7388 aaKnown RBP7.29□□□□□ -1.24
UPF3A-208ENST00000484246 NDUFC1O43677 76 aa7.28□□□□□ -1.24
UPF3A-208ENST00000484246 DMAC1Q96GE9 116 aa7.27□□□□□ -1.25
UPF3A-208ENST00000484246 H0YAA0 97 aa7.24□□□□□ -1.25
UPF3A-208ENST00000484246 SPRR2GQ9BYE4 73 aa7.21□□□□□ -1.26
UPF3A-208ENST00000484246 KRTAP19-6Q3LI70 58 aa7.19□□□□□ -1.26
UPF3A-208ENST00000484246 CRIPTQ9P021 101 aa7.17□□□□□ -1.26
UPF3A-208ENST00000484246 SERP2Q8N6R1 65 aa7.15□□□□□ -1.26
UPF3A-208ENST00000484246 KRTAP19-8Q3LI54 63 aa7.14□□□□□ -1.27
UPF3A-208ENST00000484246 SNURFQ9Y675 71 aa7.09□□□□□ -1.27
UPF3A-208ENST00000484246 MT1BP07438 61 aa7.08□□□□□ -1.28
UPF3A-208ENST00000484246 ACYP2P14621 99 aa7.08□□□□□ -1.28
UPF3A-208ENST00000484246 ADM2Q7Z4H4 148 aa7.07□□□□□ -1.28
UPF3A-208ENST00000484246 C20orf197Q8N268 126 aa7.07□□□□□ -1.28
UPF3A-208ENST00000484246 SPANXA2-OT1Q8N9U9 137 aa7.07□□□□□ -1.28
UPF3A-208ENST00000484246 Q5VV11 94 aa7.06□□□□□ -1.28
UPF3A-208ENST00000484246 KRTAP15-1Q3LI76 137 aa7□□□□□ -1.29
UPF3A-208ENST00000484246 COX7CP15954 63 aa6.98□□□□□ -1.29
UPF3A-208ENST00000484246 SPTSSBQ8NFR3 76 aa6.97□□□□□ -1.29
UPF3A-208ENST00000484246 NEBP20929 6669 aa6.95□□□□□ -1.3
UPF3A-208ENST00000484246 P0C880 135 aa6.95□□□□□ -1.3
UPF3A-208ENST00000484246 CHKB-CPT1BH3BT56 60 aa6.92□□□□□ -1.3
UPF3A-208ENST00000484246 A6NN06 94 aa6.88□□□□□ -1.31
UPF3A-208ENST00000484246 KRTAP10-5P60370 271 aa6.88□□□□□ -1.31
UPF3A-208ENST00000484246 KRTAP6-3Q3LI67 103 aa6.88□□□□□ -1.31
UPF3A-208ENST00000484246 R4GN34 69 aa6.88□□□□□ -1.31
UPF3A-208ENST00000484246 H7BZZ5 65 aa6.85□□□□□ -1.31
UPF3A-208ENST00000484246 MUC12Q9UKN1 5478 aa6.83□□□□□ -1.32
UPF3A-208ENST00000484246 M0QZ58 72 aa6.82□□□□□ -1.32
UPF3A-208ENST00000484246 CYSTM1Q9H1C7 97 aa6.82□□□□□ -1.32
UPF3A-208ENST00000484246 COA5Q86WW8 74 aa6.8□□□□□ -1.32
UPF3A-208ENST00000484246 ANAPC13Q9BS18 74 aa6.8□□□□□ -1.32
UPF3A-208ENST00000484246 PLAC4Q8WY50 150 aa6.73□□□□□ -1.33
UPF3A-208ENST00000484246 KRTAP20-1Q3LI63 56 aa6.71□□□□□ -1.34
UPF3A-208ENST00000484246 MT1XP80297 61 aa6.69□□□□□ -1.34
UPF3A-208ENST00000484246 PRO2289Q9P1D8 64 aa6.69□□□□□ -1.34
UPF3A-208ENST00000484246 CCDC179H3BU77 68 aa6.66□□□□□ -1.34
UPF3A-208ENST00000484246 LINC01554Q52M75 96 aa6.66□□□□□ -1.34
UPF3A-208ENST00000484246 ATP5EP56381 51 aaPredicted RBP6.6□□□□□ -1.35
UPF3A-208ENST00000484246 MDN1Q9NU22 5596 aa6.58□□□□□ -1.36
UPF3A-208ENST00000484246 SEC61GP60059 68 aa6.58□□□□□ -1.36
UPF3A-208ENST00000484246 KRTAP13-4Q3LI77 160 aa6.58□□□□□ -1.36
UPF3A-208ENST00000484246 SERP1Q9Y6X1 66 aa6.56□□□□□ -1.36
UPF3A-208ENST00000484246 KRTAP12-2P59991 146 aa6.53□□□□□ -1.36
UPF3A-208ENST00000484246 KRTAP5-9P26371 169 aa6.49□□□□□ -1.37
UPF3A-208ENST00000484246 KMT2DO14686 5537 aa6.48□□□□□ -1.37
UPF3A-208ENST00000484246 TMEM258P61165 79 aa6.48□□□□□ -1.37
UPF3A-208ENST00000484246 A0A1B0GU33 70 aa6.46□□□□□ -1.38
UPF3A-208ENST00000484246 A0A1B0GU69 56 aa6.43□□□□□ -1.38
UPF3A-208ENST00000484246 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
UPF3A-208ENST00000484246 KRTAP10-12P60413 245 aa6.37□□□□□ -1.39
UPF3A-208ENST00000484246 KRTAP10-7P60409 375 aaPredicted RBP6.35□□□□□ -1.39
UPF3A-208ENST00000484246 A0A0D9SG42 100 aa6.34□□□□□ -1.39
UPF3A-208ENST00000484246 CAMK2N1Q7Z7J9 78 aa6.34□□□□□ -1.39
UPF3A-208ENST00000484246 SVIPQ8NHG7 77 aa6.34□□□□□ -1.39
UPF3A-208ENST00000484246 LINC01558Q9Y6Z2 57 aa6.33□□□□□ -1.4
UPF3A-208ENST00000484246 KRTAP2-3P0C7H8 128 aa6.32□□□□□ -1.4
UPF3A-208ENST00000484246 KRTAP8-1Q8IUC2 63 aa6.32□□□□□ -1.4
UPF3A-208ENST00000484246 PRR15LQ9BU68 103 aa6.32□□□□□ -1.4
UPF3A-208ENST00000484246 KRTAP2-4Q9BYR9 128 aa6.32□□□□□ -1.4
UPF3A-208ENST00000484246 SMIM26A0A096LP01 95 aa6.3□□□□□ -1.4
UPF3A-208ENST00000484246 KRTAP12-1P59990 96 aa6.3□□□□□ -1.4
UPF3A-208ENST00000484246 KRTAP5-3Q6L8H2 238 aa6.29□□□□□ -1.4
UPF3A-208ENST00000484246 SPRR2FQ96RM1 72 aa6.27□□□□□ -1.41
UPF3A-208ENST00000484246 SPINT4Q6UDR6 99 aa6.24□□□□□ -1.41
UPF3A-208ENST00000484246 A8MU10 97 aa6.2□□□□□ -1.42
UPF3A-208ENST00000484246 SPRR2EP22531 72 aa6.16□□□□□ -1.42
UPF3A-208ENST00000484246 SPRR2BP35325 72 aa6.16□□□□□ -1.42
UPF3A-208ENST00000484246 SPRR2AP35326 72 aa6.16□□□□□ -1.42
UPF3A-208ENST00000484246 UQCR11O14957 56 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms