RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 LPAP08519 4548 aa7.78□□□□□ -1.16
CHD3-211ENST00000481999 C20orf166-AS1Q96NR2 134 aa7.76□□□□□ -1.17
CHD3-211ENST00000481999 A8MUU9 505 aa7.76□□□□□ -1.17
CHD3-211ENST00000481999 SPATA8Q6RVD6 105 aa7.75□□□□□ -1.17
CHD3-211ENST00000481999 UQCR11O14957 56 aa7.74□□□□□ -1.17
CHD3-211ENST00000481999 LRP2P98164 4655 aa7.73□□□□□ -1.17
CHD3-211ENST00000481999 MIR22HGQ0VDD5 57 aa7.71□□□□□ -1.18
CHD3-211ENST00000481999 H3BS24 57 aa7.7□□□□□ -1.18
CHD3-211ENST00000481999 J3QL48 77 aa7.67□□□□□ -1.18
CHD3-211ENST00000481999 XP32Q5T750 250 aa7.64□□□□□ -1.19
CHD3-211ENST00000481999 HERC1Q15751 4861 aa7.63□□□□□ -1.19
CHD3-211ENST00000481999 KRTAP3-1Q9BYR8 98 aa7.58□□□□□ -1.2
CHD3-211ENST00000481999 RPL37P61927 97 aaKnown RBP7.55□□□□□ -1.2
CHD3-211ENST00000481999 COX6B2Q6YFQ2 88 aa7.5□□□□□ -1.21
CHD3-211ENST00000481999 PRAC1Q96KF2 57 aa7.47□□□□□ -1.21
CHD3-211ENST00000481999 A0A1B0GU33 70 aa7.45□□□□□ -1.22
CHD3-211ENST00000481999 ADM2Q7Z4H4 148 aa7.45□□□□□ -1.22
CHD3-211ENST00000481999 H0YAA0 97 aa7.44□□□□□ -1.22
CHD3-211ENST00000481999 MUC2Q02817 5179 aa7.44□□□□□ -1.22
CHD3-211ENST00000481999 TPRXLQ17RH7 258 aa7.43□□□□□ -1.22
CHD3-211ENST00000481999 HMCN2Q8NDA2 5059 aa7.42□□□□□ -1.22
CHD3-211ENST00000481999 H1FX-AS1Q4G0G2 97 aa7.42□□□□□ -1.22
CHD3-211ENST00000481999 LINC01554Q52M75 96 aa7.4□□□□□ -1.22
CHD3-211ENST00000481999 CSAG1Q6PB30 78 aa7.28□□□□□ -1.24
CHD3-211ENST00000481999 MUC17Q685J3 4493 aa7.28□□□□□ -1.24
CHD3-211ENST00000481999 KRTAP3-3Q9BYR6 98 aa7.27□□□□□ -1.25
CHD3-211ENST00000481999 KRTAP4-1Q9BYQ7 146 aa7.25□□□□□ -1.25
CHD3-211ENST00000481999 K7ERS5 55 aa7.24□□□□□ -1.25
CHD3-211ENST00000481999 S4R3F8 94 aa7.23□□□□□ -1.25
CHD3-211ENST00000481999 KRTAP10-6P60371 365 aaPredicted RBP7.21□□□□□ -1.26
CHD3-211ENST00000481999 KRTAP3-2Q9BYR7 98 aa7.16□□□□□ -1.26
CHD3-211ENST00000481999 UBR4Q5T4S7 5183 aa7.15□□□□□ -1.26
CHD3-211ENST00000481999 SEC61BP60468 96 aaKnown RBP7.13□□□□□ -1.27
CHD3-211ENST00000481999 KRTAP25-1Q3LHN0 102 aa7.11□□□□□ -1.27
CHD3-211ENST00000481999 KRTAP13-4Q3LI77 160 aa7.1□□□□□ -1.27
CHD3-211ENST00000481999 RNF213Q63HN8 5207 aa7.1□□□□□ -1.27
CHD3-211ENST00000481999 FAT4Q6V0I7 4981 aa7.07□□□□□ -1.28
CHD3-211ENST00000481999 A0A0D9SG42 100 aa7.06□□□□□ -1.28
CHD3-211ENST00000481999 P0C880 135 aa7.06□□□□□ -1.28
CHD3-211ENST00000481999 ROMO1P60602 79 aa7.04□□□□□ -1.28
CHD3-211ENST00000481999 KRTAP19-2Q3LHN2 52 aa6.99□□□□□ -1.29
CHD3-211ENST00000481999 CRIPTQ9P021 101 aa6.95□□□□□ -1.3
CHD3-211ENST00000481999 FLGP20930 4061 aaPredicted RBP6.9□□□□□ -1.31
CHD3-211ENST00000481999 M0QZ58 72 aa6.9□□□□□ -1.31
CHD3-211ENST00000481999 KRTAP12-2P59991 146 aa6.89□□□□□ -1.31
CHD3-211ENST00000481999 KRTAP12-1P59990 96 aa6.86□□□□□ -1.31
CHD3-211ENST00000481999 SPINT4Q6UDR6 99 aa6.84□□□□□ -1.31
CHD3-211ENST00000481999 LORP23490 312 aaPredicted RBP6.82□□□□□ -1.32
CHD3-211ENST00000481999 A0A0A0MQY5 61 aa6.77□□□□□ -1.33
CHD3-211ENST00000481999 LCE2CQ5TA81 110 aa6.75□□□□□ -1.33
CHD3-211ENST00000481999 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
CHD3-211ENST00000481999 R4GN34 69 aa6.71□□□□□ -1.34
CHD3-211ENST00000481999 MT1HP80294 61 aa6.58□□□□□ -1.36
CHD3-211ENST00000481999 M0R2T5 61 aa6.56□□□□□ -1.36
CHD3-211ENST00000481999 LCE2AQ5TA79 106 aaPredicted RBP6.53□□□□□ -1.36
CHD3-211ENST00000481999 NDUFAF8A1L188 74 aa6.47□□□□□ -1.37
CHD3-211ENST00000481999 KRTAP15-1Q3LI76 137 aa6.46□□□□□ -1.37
CHD3-211ENST00000481999 MT1FP04733 61 aa6.39□□□□□ -1.39
CHD3-211ENST00000481999 MT2AP02795 61 aa6.38□□□□□ -1.39
CHD3-211ENST00000481999 KRTAP9-8Q9BYQ0 159 aa6.38□□□□□ -1.39
CHD3-211ENST00000481999 CAMK2N1Q7Z7J9 78 aa6.37□□□□□ -1.39
CHD3-211ENST00000481999 KRTAP10-10P60014 251 aa6.34□□□□□ -1.39
CHD3-211ENST00000481999 KRTAP19-1Q8IUB9 90 aa6.34□□□□□ -1.39
CHD3-211ENST00000481999 PP632Q6XCG6 107 aa6.29□□□□□ -1.4
CHD3-211ENST00000481999 SPRR2GQ9BYE4 73 aa6.27□□□□□ -1.41
CHD3-211ENST00000481999 PLAC4Q8WY50 150 aa6.22□□□□□ -1.41
CHD3-211ENST00000481999 LUZP6Q538Z0 58 aa6.21□□□□□ -1.42
CHD3-211ENST00000481999 USH2AO75445 5202 aa6.21□□□□□ -1.42
CHD3-211ENST00000481999 TNP1P09430 55 aa6.14□□□□□ -1.43
CHD3-211ENST00000481999 KRTAP9-3Q9BYQ3 159 aa6.11□□□□□ -1.43
CHD3-211ENST00000481999 KRTAP23-1A1A580 65 aa6.09□□□□□ -1.43
CHD3-211ENST00000481999 KRTAP9-2Q9BYQ4 174 aa6.07□□□□□ -1.44
CHD3-211ENST00000481999 MT1BP07438 61 aa6.06□□□□□ -1.44
CHD3-211ENST00000481999 LCE2DQ5TA82 110 aaPredicted RBP6.05□□□□□ -1.44
CHD3-211ENST00000481999 KRTAP19-8Q3LI54 63 aa6.03□□□□□ -1.44
CHD3-211ENST00000481999 FSIP2Q5CZC0 6907 aa6□□□□□ -1.45
CHD3-211ENST00000481999 LCE2BO14633 110 aa5.99□□□□□ -1.45
CHD3-211ENST00000481999 MT1XP80297 61 aa5.93□□□□□ -1.46
CHD3-211ENST00000481999 KRTAP10-5P60370 271 aa5.92□□□□□ -1.46
CHD3-211ENST00000481999 KMT2DO14686 5537 aa5.87□□□□□ -1.47
CHD3-211ENST00000481999 SPRR5A0A1B0GTR4 108 aa5.82□□□□□ -1.48
CHD3-211ENST00000481999 SSPOA2VEC9 5147 aa5.79□□□□□ -1.48
CHD3-211ENST00000481999 LCE3AQ5TA76 89 aa5.79□□□□□ -1.48
CHD3-211ENST00000481999 KRTAP10-7P60409 375 aaPredicted RBP5.78□□□□□ -1.48
CHD3-211ENST00000481999 CRCT1Q9UGL9 99 aa5.78□□□□□ -1.48
CHD3-211ENST00000481999 KRTAP9-6A0A140TA67 174 aa5.75□□□□□ -1.49
CHD3-211ENST00000481999 KRTAP8-1Q8IUC2 63 aa5.68□□□□□ -1.5
CHD3-211ENST00000481999 KRTAP10-12P60413 245 aa5.65□□□□□ -1.5
CHD3-211ENST00000481999 PRO2289Q9P1D8 64 aa5.65□□□□□ -1.51
CHD3-211ENST00000481999 KRTAP19-6Q3LI70 58 aa5.62□□□□□ -1.51
CHD3-211ENST00000481999 FCGBPQ9Y6R7 5405 aaPredicted RBP5.59□□□□□ -1.52
CHD3-211ENST00000481999 KRTAP4-8A0A0G2JLE6 195 aa5.58□□□□□ -1.52
CHD3-211ENST00000481999 KRTAP4-8Q9BYQ9 185 aa5.58□□□□□ -1.52
CHD3-211ENST00000481999 KRTAP12-3P60328 96 aa5.53□□□□□ -1.52
CHD3-211ENST00000481999 KRTAP19-5Q3LI72 72 aa5.43□□□□□ -1.54
CHD3-211ENST00000481999 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.38□□□□□ -1.55
CHD3-211ENST00000481999 MACF1Q9UPN3 7388 aaKnown RBP5.36□□□□□ -1.55
CHD3-211ENST00000481999 KRTAP19-7Q3SYF9 63 aa5.29□□□□□ -1.56
CHD3-211ENST00000481999 MUC12Q9UKN1 5478 aa5.28□□□□□ -1.56
CHD3-211ENST00000481999 SYNE2Q8WXH0 6885 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms