RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 LCE2CQ5TA81 110 aa8.72□□□□□ -1.01
UPF3A-206ENST00000480362 S4R3F8 94 aa8.64□□□□□ -1.03
UPF3A-206ENST00000480362 COA5Q86WW8 74 aa8.62□□□□□ -1.03
UPF3A-206ENST00000480362 LCA10Q71F78 164 aa8.6□□□□□ -1.03
UPF3A-206ENST00000480362 CHKB-CPT1BH3BT56 60 aa8.59□□□□□ -1.03
UPF3A-206ENST00000480362 MT1HP80294 61 aa8.56□□□□□ -1.04
UPF3A-206ENST00000480362 SERP1Q9Y6X1 66 aa8.53□□□□□ -1.04
UPF3A-206ENST00000480362 FAT4Q6V0I7 4981 aa8.53□□□□□ -1.04
UPF3A-206ENST00000480362 FLGP20930 4061 aaPredicted RBP8.52□□□□□ -1.05
UPF3A-206ENST00000480362 CSAG1Q6PB30 78 aa8.49□□□□□ -1.05
UPF3A-206ENST00000480362 M0R2T5 61 aa8.48□□□□□ -1.05
UPF3A-206ENST00000480362 SPTSSBQ8NFR3 76 aa8.47□□□□□ -1.05
UPF3A-206ENST00000480362 LCE2AQ5TA79 106 aaPredicted RBP8.42□□□□□ -1.06
UPF3A-206ENST00000480362 RPS28P62857 69 aaKnown RBP8.4□□□□□ -1.06
UPF3A-206ENST00000480362 KRTAP10-6P60371 365 aaPredicted RBP8.29□□□□□ -1.08
UPF3A-206ENST00000480362 SMIM26A0A096LP01 95 aa8.28□□□□□ -1.08
UPF3A-206ENST00000480362 H0YAA0 97 aa8.25□□□□□ -1.09
UPF3A-206ENST00000480362 LORP23490 312 aaPredicted RBP8.25□□□□□ -1.09
UPF3A-206ENST00000480362 ADM2Q7Z4H4 148 aa8.24□□□□□ -1.09
UPF3A-206ENST00000480362 LINC01558Q9Y6Z2 57 aa8.22□□□□□ -1.09
UPF3A-206ENST00000480362 KRTAP9-8Q9BYQ0 159 aa8.21□□□□□ -1.1
UPF3A-206ENST00000480362 SEC61GP60059 68 aa8.18□□□□□ -1.1
UPF3A-206ENST00000480362 Q1T7F1 81 aa8.17□□□□□ -1.1
UPF3A-206ENST00000480362 A0A1B0GU69 56 aa8.16□□□□□ -1.1
UPF3A-206ENST00000480362 MT2AP02795 61 aa8.16□□□□□ -1.1
UPF3A-206ENST00000480362 V9GYY9 64 aa8.16□□□□□ -1.1
UPF3A-206ENST00000480362 P0C880 135 aa8.15□□□□□ -1.1
UPF3A-206ENST00000480362 MT1FP04733 61 aa8.11□□□□□ -1.11
UPF3A-206ENST00000480362 KRTAP10-10P60014 251 aa8.1□□□□□ -1.11
UPF3A-206ENST00000480362 PRR15LQ9BU68 103 aa8.1□□□□□ -1.11
UPF3A-206ENST00000480362 PSPHP1O15172 72 aa8.05□□□□□ -1.12
UPF3A-206ENST00000480362 A0A1B0GU33 70 aa8□□□□□ -1.13
UPF3A-206ENST00000480362 CRIPTQ9P021 101 aa7.99□□□□□ -1.13
UPF3A-206ENST00000480362 Q5VV11 94 aa7.97□□□□□ -1.13
UPF3A-206ENST00000480362 KRTAP9-2Q9BYQ4 174 aa7.96□□□□□ -1.14
UPF3A-206ENST00000480362 R4GN34 69 aa7.95□□□□□ -1.14
UPF3A-206ENST00000480362 M0QZ58 72 aa7.93□□□□□ -1.14
UPF3A-206ENST00000480362 KRTAP9-3Q9BYQ3 159 aa7.93□□□□□ -1.14
UPF3A-206ENST00000480362 KRTAP13-4Q3LI77 160 aa7.9□□□□□ -1.14
UPF3A-206ENST00000480362 SPATA8Q6RVD6 105 aa7.88□□□□□ -1.15
UPF3A-206ENST00000480362 KRTAP19-1Q8IUB9 90 aa7.88□□□□□ -1.15
UPF3A-206ENST00000480362 UQCR11O14957 56 aa7.87□□□□□ -1.15
UPF3A-206ENST00000480362 SPRR2GQ9BYE4 73 aa7.87□□□□□ -1.15
UPF3A-206ENST00000480362 A6NED7 52 aa7.8□□□□□ -1.16
UPF3A-206ENST00000480362 LINC01554Q52M75 96 aa7.8□□□□□ -1.16
UPF3A-206ENST00000480362 KRTAP9-6A0A140TA67 174 aa7.78□□□□□ -1.16
UPF3A-206ENST00000480362 MIR22HGQ0VDD5 57 aa7.77□□□□□ -1.17
UPF3A-206ENST00000480362 A0A0D9SG42 100 aa7.75□□□□□ -1.17
UPF3A-206ENST00000480362 A8MU10 97 aa7.73□□□□□ -1.17
UPF3A-206ENST00000480362 KRTAP19-8Q3LI54 63 aa7.71□□□□□ -1.18
UPF3A-206ENST00000480362 A6NN06 94 aa7.63□□□□□ -1.19
UPF3A-206ENST00000480362 MT1BP07438 61 aa7.63□□□□□ -1.19
UPF3A-206ENST00000480362 CDC42SE1Q9NRR8 79 aa7.61□□□□□ -1.19
UPF3A-206ENST00000480362 KRTAP12-1P59990 96 aa7.59□□□□□ -1.19
UPF3A-206ENST00000480362 SPINT4Q6UDR6 99 aa7.59□□□□□ -1.19
UPF3A-206ENST00000480362 PLAC4Q8WY50 150 aa7.59□□□□□ -1.19
UPF3A-206ENST00000480362 CRCT1Q9UGL9 99 aa7.56□□□□□ -1.2
UPF3A-206ENST00000480362 KRTAP12-2P59991 146 aa7.55□□□□□ -1.2
UPF3A-206ENST00000480362 BRK1Q8WUW1 75 aa7.53□□□□□ -1.2
UPF3A-206ENST00000480362 USH2AO75445 5202 aa7.5□□□□□ -1.21
UPF3A-206ENST00000480362 FSIP2Q5CZC0 6907 aa7.48□□□□□ -1.21
UPF3A-206ENST00000480362 K7ERS5 55 aa7.45□□□□□ -1.22
UPF3A-206ENST00000480362 CAMK2N1Q7Z7J9 78 aa7.42□□□□□ -1.22
UPF3A-206ENST00000480362 MT1XP80297 61 aa7.33□□□□□ -1.24
UPF3A-206ENST00000480362 KRTAP19-6Q3LI70 58 aa7.32□□□□□ -1.24
UPF3A-206ENST00000480362 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
UPF3A-206ENST00000480362 SSPOA2VEC9 5147 aa7.27□□□□□ -1.25
UPF3A-206ENST00000480362 PRO2289Q9P1D8 64 aa7.27□□□□□ -1.25
UPF3A-206ENST00000480362 H3BS24 57 aa7.23□□□□□ -1.25
UPF3A-206ENST00000480362 PRO0628Q9UI54 55 aa7.22□□□□□ -1.25
UPF3A-206ENST00000480362 C10orf95Q9H7T3 257 aa7.21□□□□□ -1.26
UPF3A-206ENST00000480362 PMAIP1Q13794 54 aa7.12□□□□□ -1.27
UPF3A-206ENST00000480362 ROMO1P60602 79 aa7.11□□□□□ -1.27
UPF3A-206ENST00000480362 FCGBPQ9Y6R7 5405 aaPredicted RBP7.09□□□□□ -1.28
UPF3A-206ENST00000480362 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.04□□□□□ -1.28
UPF3A-206ENST00000480362 TNP1P09430 55 aa7.03□□□□□ -1.28
UPF3A-206ENST00000480362 KRTAP10-7P60409 375 aaPredicted RBP7.02□□□□□ -1.29
UPF3A-206ENST00000480362 KRTAP25-1Q3LHN0 102 aa6.96□□□□□ -1.3
UPF3A-206ENST00000480362 KRTAP10-12P60413 245 aa6.95□□□□□ -1.3
UPF3A-206ENST00000480362 KRTAP9-7A8MTY7 169 aa6.91□□□□□ -1.3
UPF3A-206ENST00000480362 MACF1Q9UPN3 7388 aaKnown RBP6.84□□□□□ -1.31
UPF3A-206ENST00000480362 LOC100996750A0A140TA64 210 aa6.83□□□□□ -1.32
UPF3A-206ENST00000480362 KRTAP4-6Q9BYQ5 205 aa6.83□□□□□ -1.32
UPF3A-206ENST00000480362 KRTAP4-8A0A0G2JLE6 195 aa6.81□□□□□ -1.32
UPF3A-206ENST00000480362 KRTAP4-8Q9BYQ9 185 aa6.81□□□□□ -1.32
UPF3A-206ENST00000480362 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
UPF3A-206ENST00000480362 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
UPF3A-206ENST00000480362 KTN1-AS1Q86SY8 53 aa6.72□□□□□ -1.33
UPF3A-206ENST00000480362 PRAC1Q96KF2 57 aa6.7□□□□□ -1.34
UPF3A-206ENST00000480362 KRTAP8-1Q8IUC2 63 aa6.69□□□□□ -1.34
UPF3A-206ENST00000480362 KMT2DO14686 5537 aa6.69□□□□□ -1.34
UPF3A-206ENST00000480362 KRTAP6-3Q3LI67 103 aa6.68□□□□□ -1.34
UPF3A-206ENST00000480362 SYNE2Q8WXH0 6885 aaKnown RBP6.66□□□□□ -1.34
UPF3A-206ENST00000480362 PP632Q6XCG6 107 aa6.66□□□□□ -1.34
UPF3A-206ENST00000480362 KRTAP19-5Q3LI72 72 aa6.58□□□□□ -1.36
UPF3A-206ENST00000480362 KRTAP19-7Q3SYF9 63 aa6.53□□□□□ -1.36
UPF3A-206ENST00000480362 KRTAP12-3P60328 96 aa6.5□□□□□ -1.37
UPF3A-206ENST00000480362 KRTAP5-9P26371 169 aa6.49□□□□□ -1.37
UPF3A-206ENST00000480362 SPRR2FQ96RM1 72 aa6.48□□□□□ -1.37
UPF3A-206ENST00000480362 MT1EP04732 61 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms