RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 KRTAP9-3Q9BYQ3 159 aa9.25□□□□□ -0.93
LIME1-205ENST00000480139 NDUFC1O43677 76 aa9.21□□□□□ -0.94
LIME1-205ENST00000480139 SNURFQ9Y675 71 aa9.21□□□□□ -0.94
LIME1-205ENST00000480139 C20orf197Q8N268 126 aa9.2□□□□□ -0.94
LIME1-205ENST00000480139 COX7CP15954 63 aa9.13□□□□□ -0.95
LIME1-205ENST00000480139 LCE2BO14633 110 aa9.1□□□□□ -0.95
LIME1-205ENST00000480139 SPANXA2-OT1Q8N9U9 137 aa9.1□□□□□ -0.95
LIME1-205ENST00000480139 ACYP2P14621 99 aa9.09□□□□□ -0.95
LIME1-205ENST00000480139 FSIP2Q5CZC0 6907 aa9.09□□□□□ -0.95
LIME1-205ENST00000480139 H0YAA0 97 aa9.08□□□□□ -0.96
LIME1-205ENST00000480139 CRCT1Q9UGL9 99 aa9.08□□□□□ -0.96
LIME1-205ENST00000480139 KRTAP9-6A0A140TA67 174 aa9.07□□□□□ -0.96
LIME1-205ENST00000480139 USH2AO75445 5202 aa9.03□□□□□ -0.96
LIME1-205ENST00000480139 ANAPC13Q9BS18 74 aa9□□□□□ -0.97
LIME1-205ENST00000480139 KRTAP19-1Q8IUB9 90 aa8.95□□□□□ -0.98
LIME1-205ENST00000480139 CRIPTQ9P021 101 aa8.95□□□□□ -0.98
LIME1-205ENST00000480139 SPRR2GQ9BYE4 73 aa8.93□□□□□ -0.98
LIME1-205ENST00000480139 ADM2Q7Z4H4 148 aa8.92□□□□□ -0.98
LIME1-205ENST00000480139 SPTSSBQ8NFR3 76 aa8.92□□□□□ -0.98
LIME1-205ENST00000480139 H7BZZ5 65 aa8.91□□□□□ -0.98
LIME1-205ENST00000480139 CHKB-CPT1BH3BT56 60 aa8.9□□□□□ -0.98
LIME1-205ENST00000480139 CYSTM1Q9H1C7 97 aa8.89□□□□□ -0.99
LIME1-205ENST00000480139 SSPOA2VEC9 5147 aa8.88□□□□□ -0.99
LIME1-205ENST00000480139 KRTAP19-8Q3LI54 63 aa8.8□□□□□ -1
LIME1-205ENST00000480139 CCDC179H3BU77 68 aa8.79□□□□□ -1
LIME1-205ENST00000480139 COA5Q86WW8 74 aa8.78□□□□□ -1
LIME1-205ENST00000480139 KRTAP3-2Q9BYR7 98 aa8.78□□□□□ -1
LIME1-205ENST00000480139 P0C880 135 aa8.77□□□□□ -1.01
LIME1-205ENST00000480139 KRTAP19-6Q3LI70 58 aa8.75□□□□□ -1.01
LIME1-205ENST00000480139 Q5VV11 94 aa8.75□□□□□ -1.01
LIME1-205ENST00000480139 MT1BP07438 61 aa8.72□□□□□ -1.01
LIME1-205ENST00000480139 R4GN34 69 aa8.68□□□□□ -1.02
LIME1-205ENST00000480139 ATP5EP56381 51 aaPredicted RBP8.64□□□□□ -1.03
LIME1-205ENST00000480139 M0QZ58 72 aa8.61□□□□□ -1.03
LIME1-205ENST00000480139 FCGBPQ9Y6R7 5405 aaPredicted RBP8.6□□□□□ -1.03
LIME1-205ENST00000480139 TMEM258P61165 79 aa8.54□□□□□ -1.04
LIME1-205ENST00000480139 SEC61GP60059 68 aa8.49□□□□□ -1.05
LIME1-205ENST00000480139 A6NN06 94 aa8.46□□□□□ -1.06
LIME1-205ENST00000480139 KRTAP10-5P60370 271 aa8.46□□□□□ -1.06
LIME1-205ENST00000480139 SERP1Q9Y6X1 66 aa8.45□□□□□ -1.06
LIME1-205ENST00000480139 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.44□□□□□ -1.06
LIME1-205ENST00000480139 PLAC4Q8WY50 150 aa8.44□□□□□ -1.06
LIME1-205ENST00000480139 LINC01554Q52M75 96 aa8.43□□□□□ -1.06
LIME1-205ENST00000480139 KRTAP13-4Q3LI77 160 aa8.36□□□□□ -1.07
LIME1-205ENST00000480139 A0A1B0GU69 56 aa8.33□□□□□ -1.08
LIME1-205ENST00000480139 PRO2289Q9P1D8 64 aa8.31□□□□□ -1.08
LIME1-205ENST00000480139 A0A1B0GU33 70 aa8.3□□□□□ -1.08
LIME1-205ENST00000480139 MT1XP80297 61 aa8.28□□□□□ -1.08
LIME1-205ENST00000480139 MACF1Q9UPN3 7388 aaKnown RBP8.26□□□□□ -1.09
LIME1-205ENST00000480139 LINC01558Q9Y6Z2 57 aa8.22□□□□□ -1.09
LIME1-205ENST00000480139 KRTAP9-7A8MTY7 169 aa8.21□□□□□ -1.1
LIME1-205ENST00000480139 PRR15LQ9BU68 103 aa8.21□□□□□ -1.1
LIME1-205ENST00000480139 SPATA8Q6RVD6 105 aa8.19□□□□□ -1.1
LIME1-205ENST00000480139 PCP4P48539 62 aa8.18□□□□□ -1.1
LIME1-205ENST00000480139 A0A0D9SG42 100 aa8.11□□□□□ -1.11
LIME1-205ENST00000480139 SYNE2Q8WXH0 6885 aaKnown RBP8.1□□□□□ -1.11
LIME1-205ENST00000480139 SMIM26A0A096LP01 95 aa8.08□□□□□ -1.12
LIME1-205ENST00000480139 KRTAP6-3Q3LI67 103 aa8.05□□□□□ -1.12
LIME1-205ENST00000480139 KRTAP12-2P59991 146 aa8.04□□□□□ -1.12
LIME1-205ENST00000480139 CAMK2N1Q7Z7J9 78 aa8.03□□□□□ -1.12
LIME1-205ENST00000480139 KRTAP12-1P59990 96 aa8.01□□□□□ -1.13
LIME1-205ENST00000480139 V9GYY9 64 aa8.01□□□□□ -1.13
LIME1-205ENST00000480139 Q1T7F1 81 aa7.97□□□□□ -1.13
LIME1-205ENST00000480139 SPINT4Q6UDR6 99 aa7.97□□□□□ -1.13
LIME1-205ENST00000480139 A8MU10 97 aa7.96□□□□□ -1.14
LIME1-205ENST00000480139 UQCR11O14957 56 aa7.95□□□□□ -1.14
LIME1-205ENST00000480139 RPS28P62857 69 aaKnown RBP7.93□□□□□ -1.14
LIME1-205ENST00000480139 KRTAP10-7P60409 375 aaPredicted RBP7.89□□□□□ -1.15
LIME1-205ENST00000480139 KRTAP10-12P60413 245 aa7.89□□□□□ -1.15
LIME1-205ENST00000480139 KRTAP5-9P26371 169 aa7.86□□□□□ -1.15
LIME1-205ENST00000480139 PSPHP1O15172 72 aa7.83□□□□□ -1.16
LIME1-205ENST00000480139 KMT2DO14686 5537 aa7.81□□□□□ -1.16
LIME1-205ENST00000480139 MIR22HGQ0VDD5 57 aa7.78□□□□□ -1.16
LIME1-205ENST00000480139 KRTAP8-1Q8IUC2 63 aa7.78□□□□□ -1.16
LIME1-205ENST00000480139 KRTAP4-8A0A0G2JLE6 195 aa7.75□□□□□ -1.17
LIME1-205ENST00000480139 KRTAP4-8Q9BYQ9 185 aa7.75□□□□□ -1.17
LIME1-205ENST00000480139 SPRR2FQ96RM1 72 aa7.67□□□□□ -1.18
LIME1-205ENST00000480139 MUC12Q9UKN1 5478 aa7.65□□□□□ -1.18
LIME1-205ENST00000480139 A6NED7 52 aa7.61□□□□□ -1.19
LIME1-205ENST00000480139 C10orf95Q9H7T3 257 aa7.61□□□□□ -1.19
LIME1-205ENST00000480139 K7ERS5 55 aa7.58□□□□□ -1.2
LIME1-205ENST00000480139 NEBP20929 6669 aa7.57□□□□□ -1.2
LIME1-205ENST00000480139 TNP1P09430 55 aa7.53□□□□□ -1.2
LIME1-205ENST00000480139 MDN1Q9NU22 5596 aa7.5□□□□□ -1.21
LIME1-205ENST00000480139 SPRR2EP22531 72 aa7.46□□□□□ -1.22
LIME1-205ENST00000480139 SPRR2BP35325 72 aa7.46□□□□□ -1.22
LIME1-205ENST00000480139 SPRR2AP35326 72 aa7.46□□□□□ -1.22
LIME1-205ENST00000480139 LCE1AQ5T7P2 110 aa7.44□□□□□ -1.22
LIME1-205ENST00000480139 KRTAP19-7Q3SYF9 63 aa7.4□□□□□ -1.22
LIME1-205ENST00000480139 CDC42SE1Q9NRR8 79 aa7.39□□□□□ -1.23
LIME1-205ENST00000480139 KRTAP25-1Q3LHN0 102 aa7.33□□□□□ -1.24
LIME1-205ENST00000480139 LCE3AQ5TA76 89 aa7.33□□□□□ -1.24
LIME1-205ENST00000480139 MT1EP04732 61 aa7.31□□□□□ -1.24
LIME1-205ENST00000480139 KRTAP19-5Q3LI72 72 aa7.29□□□□□ -1.24
LIME1-205ENST00000480139 KRTAP20-1Q3LI63 56 aa7.23□□□□□ -1.25
LIME1-205ENST00000480139 SPRR2DP22532 72 aa7.21□□□□□ -1.26
LIME1-205ENST00000480139 KRTAP19-3Q7Z4W3 81 aa7.18□□□□□ -1.26
LIME1-205ENST00000480139 KRTAP2-3P0C7H8 128 aa7.17□□□□□ -1.26
LIME1-205ENST00000480139 KRTAP2-4Q9BYR9 128 aa7.17□□□□□ -1.26
LIME1-205ENST00000480139 LCE5AQ5TCM9 118 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 214.1 ms