RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 SZT2Q5T011 3432 aa1.89□□□□□ -2.11
USF3-202ENST00000478658 HRNRQ86YZ3 2850 aaPredicted RBP1.88□□□□□ -2.11
USF3-202ENST00000478658 VCANP13611 3396 aa1.88□□□□□ -2.11
USF3-202ENST00000478658 MT1HP80294 61 aa1.87□□□□□ -2.11
USF3-202ENST00000478658 DNAH6Q9C0G6 4158 aa1.86□□□□□ -2.11
USF3-202ENST00000478658 LCE2DQ5TA82 110 aaPredicted RBP1.86□□□□□ -2.11
USF3-202ENST00000478658 ADGRG4Q8IZF6 3080 aa1.86□□□□□ -2.11
USF3-202ENST00000478658 VPS13BQ7Z7G8 4022 aa1.84□□□□□ -2.11
USF3-202ENST00000478658 DMXL1Q9Y485 3027 aa1.84□□□□□ -2.12
USF3-202ENST00000478658 BRCA2P51587 3418 aa1.84□□□□□ -2.12
USF3-202ENST00000478658 MT1FP04733 61 aa1.83□□□□□ -2.12
USF3-202ENST00000478658 PRUNE2Q8WUY3 3088 aa1.83□□□□□ -2.12
USF3-202ENST00000478658 RANBP2P49792 3224 aaKnown RBP1.82□□□□□ -2.12
USF3-202ENST00000478658 BOD1L1Q8NFC6 3051 aa1.82□□□□□ -2.12
USF3-202ENST00000478658 HERC2O95714 4834 aa1.81□□□□□ -2.12
USF3-202ENST00000478658 MT2AP02795 61 aa1.81□□□□□ -2.12
USF3-202ENST00000478658 ZNF469Q96JG9 3925 aaPredicted RBP1.8□□□□□ -2.12
USF3-202ENST00000478658 KMT2AQ03164 3969 aa1.8□□□□□ -2.12
USF3-202ENST00000478658 FBN2P35556 2912 aa1.79□□□□□ -2.12
USF3-202ENST00000478658 FLGP20930 4061 aaPredicted RBP1.79□□□□□ -2.12
USF3-202ENST00000478658 MT1LQ93083 61 aa1.79□□□□□ -2.12
USF3-202ENST00000478658 KRTAP19-8Q3LI54 63 aa1.78□□□□□ -2.12
USF3-202ENST00000478658 USP34Q70CQ2 3546 aa1.78□□□□□ -2.12
USF3-202ENST00000478658 REV3LO60673 3130 aa1.78□□□□□ -2.12
USF3-202ENST00000478658 KRTAP4-5Q9BYR2 181 aa1.77□□□□□ -2.13
USF3-202ENST00000478658 HECTD4Q9Y4D8 3996 aa1.76□□□□□ -2.13
USF3-202ENST00000478658 ANK2Q01484 3957 aa1.76□□□□□ -2.13
USF3-202ENST00000478658 ASPMQ8IZT6 3477 aa1.74□□□□□ -2.13
USF3-202ENST00000478658 COL6A3P12111 3177 aa1.74□□□□□ -2.13
USF3-202ENST00000478658 KIAA1109Q2LD37 5005 aa1.73□□□□□ -2.13
USF3-202ENST00000478658 KRTAP19-3Q7Z4W3 81 aa1.72□□□□□ -2.13
USF3-202ENST00000478658 VPS13AQ96RL7 3174 aa1.72□□□□□ -2.13
USF3-202ENST00000478658 SPRR5A0A1B0GTR4 108 aa1.72□□□□□ -2.13
USF3-202ENST00000478658 RNF213Q63HN8 5207 aa1.72□□□□□ -2.13
USF3-202ENST00000478658 MT1EP04732 61 aa1.71□□□□□ -2.14
USF3-202ENST00000478658 CDH23Q9H251 3354 aa1.71□□□□□ -2.14
USF3-202ENST00000478658 LAMA3Q16787 3333 aa1.71□□□□□ -2.14
USF3-202ENST00000478658 FAT4Q6V0I7 4981 aa1.7□□□□□ -2.14
USF3-202ENST00000478658 DNAH14Q0VDD8 3507 aa1.69□□□□□ -2.14
USF3-202ENST00000478658 SPTBN5Q9NRC6 3674 aaKnown RBP1.69□□□□□ -2.14
USF3-202ENST00000478658 PLECQ15149 4684 aaKnown RBP1.69□□□□□ -2.14
USF3-202ENST00000478658 DNAH2Q9P225 4427 aa1.68□□□□□ -2.14
USF3-202ENST00000478658 PRKDCP78527 4128 aaKnown RBP1.68□□□□□ -2.14
USF3-202ENST00000478658 HMCN2Q8NDA2 5059 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 LCE1DQ5T752 114 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 PRM1P04553 51 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 MT1XP80297 61 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 MT1MQ8N339 61 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 SPEGQ15772 3267 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 LCE1BQ5T7P3 118 aa1.67□□□□□ -2.14
USF3-202ENST00000478658 FAT2Q9NYQ8 4349 aa1.66□□□□□ -2.14
USF3-202ENST00000478658 SPENQ96T58 3664 aaKnown RBP1.66□□□□□ -2.14
USF3-202ENST00000478658 CELSR3Q9NYQ7 3312 aa1.66□□□□□ -2.14
USF3-202ENST00000478658 KRTAP20-1Q3LI63 56 aa1.65□□□□□ -2.14
USF3-202ENST00000478658 MT1BP07438 61 aa1.65□□□□□ -2.14
USF3-202ENST00000478658 LCE5AQ5TCM9 118 aa1.65□□□□□ -2.15
USF3-202ENST00000478658 LCE4AQ5TA78 99 aa1.64□□□□□ -2.15
USF3-202ENST00000478658 LYSTQ99698 3801 aa1.64□□□□□ -2.15
USF3-202ENST00000478658 DCHS1Q96JQ0 3298 aa1.63□□□□□ -2.15
USF3-202ENST00000478658 HERC1Q15751 4861 aa1.63□□□□□ -2.15
USF3-202ENST00000478658 MT4P47944 62 aa1.63□□□□□ -2.15
USF3-202ENST00000478658 MT1AP04731 61 aa1.62□□□□□ -2.15
USF3-202ENST00000478658 LCE1CQ5T751 118 aa1.62□□□□□ -2.15
USF3-202ENST00000478658 LCE1EQ5T753 118 aa1.62□□□□□ -2.15
USF3-202ENST00000478658 LCE1FQ5T754 118 aa1.62□□□□□ -2.15
USF3-202ENST00000478658 LCE1AQ5T7P2 110 aa1.62□□□□□ -2.15
USF3-202ENST00000478658 LRP1Q07954 4544 aaKnown RBP1.61□□□□□ -2.15
USF3-202ENST00000478658 FREM2Q5SZK8 3169 aa1.61□□□□□ -2.15
USF3-202ENST00000478658 MYCBP2O75592 4640 aa1.61□□□□□ -2.15
USF3-202ENST00000478658 SACSQ9NZJ4 4579 aa1.6□□□□□ -2.15
USF3-202ENST00000478658 KRTAP19-1Q8IUB9 90 aa1.6□□□□□ -2.15
USF3-202ENST00000478658 STARD9Q9P2P6 4700 aa1.59□□□□□ -2.15
USF3-202ENST00000478658 VPS13CQ709C8 3753 aa1.59□□□□□ -2.15
USF3-202ENST00000478658 CFAP47Q6ZTR5 3102 aa1.58□□□□□ -2.16
USF3-202ENST00000478658 FSIP2Q5CZC0 6907 aa1.58□□□□□ -2.16
USF3-202ENST00000478658 HSPG2P98160 4391 aa1.58□□□□□ -2.16
USF3-202ENST00000478658 KRTAP2-3P0C7H8 128 aa1.56□□□□□ -2.16
USF3-202ENST00000478658 KRTAP2-4Q9BYR9 128 aa1.56□□□□□ -2.16
USF3-202ENST00000478658 KRTAP9-9Q9BYP9 154 aa1.56□□□□□ -2.16
USF3-202ENST00000478658 DYNC1H1Q14204 4646 aaKnown RBP1.56□□□□□ -2.16
USF3-202ENST00000478658 PKHD1L1Q86WI1 4243 aa1.55□□□□□ -2.16
USF3-202ENST00000478658 MYO15AQ9UKN7 3530 aa1.55□□□□□ -2.16
USF3-202ENST00000478658 CSMD3Q7Z407 3707 aa1.54□□□□□ -2.16
USF3-202ENST00000478658 ANK3Q12955 4377 aaKnown RBP1.54□□□□□ -2.16
USF3-202ENST00000478658 DNAH10Q8IVF4 4471 aa1.54□□□□□ -2.16
USF3-202ENST00000478658 MUC3AQ02505 3323 aa1.53□□□□□ -2.16
USF3-202ENST00000478658 LOC400499M0QZD8 3231 aa1.53□□□□□ -2.16
USF3-202ENST00000478658 CSMD2Q7Z408 3487 aa1.52□□□□□ -2.17
USF3-202ENST00000478658 USH2AO75445 5202 aa1.52□□□□□ -2.17
USF3-202ENST00000478658 KRTAP4-1Q9BYQ7 146 aa1.52□□□□□ -2.17
USF3-202ENST00000478658 KRTAP19-6Q3LI70 58 aa1.49□□□□□ -2.17
USF3-202ENST00000478658 DMDP11532 3685 aa1.49□□□□□ -2.17
USF3-202ENST00000478658 FAT1Q14517 4588 aa1.49□□□□□ -2.17
USF3-202ENST00000478658 CSMD1Q96PZ7 3565 aa1.48□□□□□ -2.17
USF3-202ENST00000478658 WDFY3Q8IZQ1 3526 aa1.48□□□□□ -2.17
USF3-202ENST00000478658 RELNP78509 3460 aa1.48□□□□□ -2.17
USF3-202ENST00000478658 PKD1P98161 4303 aa1.48□□□□□ -2.17
USF3-202ENST00000478658 LRP1BQ9NZR2 4599 aa1.46□□□□□ -2.18
USF3-202ENST00000478658 DNAH5Q8TE73 4624 aa1.46□□□□□ -2.18
USF3-202ENST00000478658 KRTAP2-1Q9BYU5 128 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms