RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 LRP1Q07954 4544 aaKnown RBP6.51□□□□□ -1.37
PTPRF-212ENST00000477970 FLG2Q5D862 2391 aaPredicted RBP6.51□□□□□ -1.37
PTPRF-212ENST00000477970 KTN1-AS1Q86SY8 53 aa6.5□□□□□ -1.37
PTPRF-212ENST00000477970 KRTAP3-1Q9BYR8 98 aa6.47□□□□□ -1.37
PTPRF-212ENST00000477970 SPATA8Q6RVD6 105 aa6.45□□□□□ -1.38
PTPRF-212ENST00000477970 RPL37P61927 97 aaKnown RBP6.45□□□□□ -1.38
PTPRF-212ENST00000477970 DMBT1Q9UGM3 2413 aaPredicted RBP6.45□□□□□ -1.38
PTPRF-212ENST00000477970 A6NN06 94 aa6.43□□□□□ -1.38
PTPRF-212ENST00000477970 COX6B2Q6YFQ2 88 aa6.43□□□□□ -1.38
PTPRF-212ENST00000477970 UQCR11O14957 56 aa6.42□□□□□ -1.38
PTPRF-212ENST00000477970 HERC1Q15751 4861 aa6.41□□□□□ -1.38
PTPRF-212ENST00000477970 XP32Q5T750 250 aa6.4□□□□□ -1.39
PTPRF-212ENST00000477970 MIR22HGQ0VDD5 57 aa6.37□□□□□ -1.39
PTPRF-212ENST00000477970 PRAC1Q96KF2 57 aa6.36□□□□□ -1.39
PTPRF-212ENST00000477970 HMCN2Q8NDA2 5059 aa6.32□□□□□ -1.4
PTPRF-212ENST00000477970 TPRXLQ17RH7 258 aa6.29□□□□□ -1.4
PTPRF-212ENST00000477970 ADM2Q7Z4H4 148 aa6.26□□□□□ -1.41
PTPRF-212ENST00000477970 H1FX-AS1Q4G0G2 97 aa6.24□□□□□ -1.41
PTPRF-212ENST00000477970 A0A1B0GU33 70 aa6.23□□□□□ -1.41
PTPRF-212ENST00000477970 KRTAP3-3Q9BYR6 98 aa6.23□□□□□ -1.41
PTPRF-212ENST00000477970 H0YAA0 97 aa6.21□□□□□ -1.41
PTPRF-212ENST00000477970 S4R3F8 94 aa6.19□□□□□ -1.42
PTPRF-212ENST00000477970 LINC01554Q52M75 96 aa6.17□□□□□ -1.42
PTPRF-212ENST00000477970 KRTAP10-6P60371 365 aaPredicted RBP6.12□□□□□ -1.43
PTPRF-212ENST00000477970 KRTAP3-2Q9BYR7 98 aa6.1□□□□□ -1.43
PTPRF-212ENST00000477970 MUC17Q685J3 4493 aa6.07□□□□□ -1.44
PTPRF-212ENST00000477970 LRP2P98164 4655 aa6.06□□□□□ -1.44
PTPRF-212ENST00000477970 LPAP08519 4548 aa6.05□□□□□ -1.44
PTPRF-212ENST00000477970 SEC61BP60468 96 aaKnown RBP6.03□□□□□ -1.44
PTPRF-212ENST00000477970 CSAG1Q6PB30 78 aa6.03□□□□□ -1.44
PTPRF-212ENST00000477970 K7ERS5 55 aa6□□□□□ -1.45
PTPRF-212ENST00000477970 UBR4Q5T4S7 5183 aa6□□□□□ -1.45
PTPRF-212ENST00000477970 KRTAP13-4Q3LI77 160 aa5.98□□□□□ -1.45
PTPRF-212ENST00000477970 P0C880 135 aa5.96□□□□□ -1.46
PTPRF-212ENST00000477970 RNF213Q63HN8 5207 aa5.91□□□□□ -1.46
PTPRF-212ENST00000477970 M0QZ58 72 aa5.9□□□□□ -1.46
PTPRF-212ENST00000477970 KRTAP4-1Q9BYQ7 146 aa5.86□□□□□ -1.47
PTPRF-212ENST00000477970 ROMO1P60602 79 aa5.84□□□□□ -1.47
PTPRF-212ENST00000477970 KRTAP19-2Q3LHN2 52 aa5.84□□□□□ -1.47
PTPRF-212ENST00000477970 CRIPTQ9P021 101 aa5.84□□□□□ -1.48
PTPRF-212ENST00000477970 A0A0D9SG42 100 aa5.82□□□□□ -1.48
PTPRF-212ENST00000477970 KRTAP25-1Q3LHN0 102 aa5.82□□□□□ -1.48
PTPRF-212ENST00000477970 KRTAP12-1P59990 96 aa5.79□□□□□ -1.48
PTPRF-212ENST00000477970 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
PTPRF-212ENST00000477970 LCE2AQ5TA79 106 aaPredicted RBP5.74□□□□□ -1.49
PTPRF-212ENST00000477970 R4GN34 69 aa5.69□□□□□ -1.5
PTPRF-212ENST00000477970 MUC2Q02817 5179 aa5.68□□□□□ -1.5
PTPRF-212ENST00000477970 SPINT4Q6UDR6 99 aa5.68□□□□□ -1.5
PTPRF-212ENST00000477970 FAT4Q6V0I7 4981 aa5.66□□□□□ -1.5
PTPRF-212ENST00000477970 LCE2CQ5TA81 110 aa5.64□□□□□ -1.51
PTPRF-212ENST00000477970 FLGP20930 4061 aaPredicted RBP5.63□□□□□ -1.51
PTPRF-212ENST00000477970 LORP23490 312 aaPredicted RBP5.61□□□□□ -1.51
PTPRF-212ENST00000477970 NDUFAF8A1L188 74 aa5.56□□□□□ -1.52
PTPRF-212ENST00000477970 MT1HP80294 61 aa5.55□□□□□ -1.52
PTPRF-212ENST00000477970 LUZP6Q538Z0 58 aa5.54□□□□□ -1.52
PTPRF-212ENST00000477970 C10orf95Q9H7T3 257 aa5.48□□□□□ -1.53
PTPRF-212ENST00000477970 LCE2DQ5TA82 110 aaPredicted RBP5.45□□□□□ -1.54
PTPRF-212ENST00000477970 KRTAP9-2Q9BYQ4 174 aa5.41□□□□□ -1.54
PTPRF-212ENST00000477970 SPRR2GQ9BYE4 73 aa5.37□□□□□ -1.55
PTPRF-212ENST00000477970 CAMK2N1Q7Z7J9 78 aa5.35□□□□□ -1.55
PTPRF-212ENST00000477970 M0R2T5 61 aa5.34□□□□□ -1.55
PTPRF-212ENST00000477970 PP632Q6XCG6 107 aa5.32□□□□□ -1.56
PTPRF-212ENST00000477970 KRTAP19-1Q8IUB9 90 aa5.28□□□□□ -1.56
PTPRF-212ENST00000477970 KRTAP9-8Q9BYQ0 159 aa5.28□□□□□ -1.56
PTPRF-212ENST00000477970 KRTAP23-1A1A580 65 aa5.28□□□□□ -1.56
PTPRF-212ENST00000477970 KRTAP15-1Q3LI76 137 aa5.28□□□□□ -1.56
PTPRF-212ENST00000477970 MT2AP02795 61 aa5.24□□□□□ -1.57
PTPRF-212ENST00000477970 MT1FP04733 61 aa5.21□□□□□ -1.58
PTPRF-212ENST00000477970 PLAC4Q8WY50 150 aa5.21□□□□□ -1.58
PTPRF-212ENST00000477970 KRTAP9-6A0A140TA67 174 aa5.2□□□□□ -1.58
PTPRF-212ENST00000477970 TNP1P09430 55 aa5.2□□□□□ -1.58
PTPRF-212ENST00000477970 KRTAP19-8Q3LI54 63 aa5.18□□□□□ -1.58
PTPRF-212ENST00000477970 KRTAP10-10P60014 251 aa5.16□□□□□ -1.58
PTPRF-212ENST00000477970 CRCT1Q9UGL9 99 aa5.14□□□□□ -1.59
PTPRF-212ENST00000477970 KRTAP9-3Q9BYQ3 159 aa5.12□□□□□ -1.59
PTPRF-212ENST00000477970 MT1BP07438 61 aa5.04□□□□□ -1.6
PTPRF-212ENST00000477970 LCE2BO14633 110 aa5.03□□□□□ -1.6
PTPRF-212ENST00000477970 KRTAP10-5P60370 271 aa4.97□□□□□ -1.61
PTPRF-212ENST00000477970 MT1XP80297 61 aa4.96□□□□□ -1.62
PTPRF-212ENST00000477970 USH2AO75445 5202 aa4.94□□□□□ -1.62
PTPRF-212ENST00000477970 SPRR5A0A1B0GTR4 108 aa4.91□□□□□ -1.62
PTPRF-212ENST00000477970 KRTAP19-6Q3LI70 58 aa4.91□□□□□ -1.62
PTPRF-212ENST00000477970 LCE3AQ5TA76 89 aa4.91□□□□□ -1.62
PTPRF-212ENST00000477970 KRTAP8-1Q8IUC2 63 aa4.89□□□□□ -1.63
PTPRF-212ENST00000477970 SSPOA2VEC9 5147 aa4.86□□□□□ -1.63
PTPRF-212ENST00000477970 PRO2289Q9P1D8 64 aa4.85□□□□□ -1.63
PTPRF-212ENST00000477970 FSIP2Q5CZC0 6907 aa4.83□□□□□ -1.64
PTPRF-212ENST00000477970 KRTAP10-12P60413 245 aa4.81□□□□□ -1.64
PTPRF-212ENST00000477970 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.79□□□□□ -1.64
PTPRF-212ENST00000477970 KRTAP10-7P60409 375 aaPredicted RBP4.75□□□□□ -1.65
PTPRF-212ENST00000477970 FCGBPQ9Y6R7 5405 aaPredicted RBP4.75□□□□□ -1.65
PTPRF-212ENST00000477970 KRTAP12-3P60328 96 aa4.71□□□□□ -1.66
PTPRF-212ENST00000477970 KRTAP9-7A8MTY7 169 aa4.68□□□□□ -1.66
PTPRF-212ENST00000477970 KRTAP6-3Q3LI67 103 aa4.58□□□□□ -1.68
PTPRF-212ENST00000477970 KRTAP19-5Q3LI72 72 aa4.54□□□□□ -1.68
PTPRF-212ENST00000477970 MACF1Q9UPN3 7388 aaKnown RBP4.54□□□□□ -1.68
PTPRF-212ENST00000477970 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
PTPRF-212ENST00000477970 KRTAP5-9P26371 169 aa4.45□□□□□ -1.7
PTPRF-212ENST00000477970 LCE3CQ5T5A8 94 aa4.45□□□□□ -1.7
PTPRF-212ENST00000477970 KRTAP4-8A0A0G2JLE6 195 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 157.8 ms