RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 COX6B2Q6YFQ2 88 aa9.6□□□□□ -0.87
CCM2-209ENST00000477605 A0A1B0GU33 70 aa9.59□□□□□ -0.87
CCM2-209ENST00000477605 MYCBP2O75592 4640 aa9.57□□□□□ -0.88
CCM2-209ENST00000477605 H0YAA0 97 aa9.57□□□□□ -0.88
CCM2-209ENST00000477605 FLG2Q5D862 2391 aaPredicted RBP9.56□□□□□ -0.88
CCM2-209ENST00000477605 H1FX-AS1Q4G0G2 97 aa9.55□□□□□ -0.88
CCM2-209ENST00000477605 HERC1Q15751 4861 aa9.5□□□□□ -0.89
CCM2-209ENST00000477605 KRTAP10-8P60410 259 aa9.47□□□□□ -0.89
CCM2-209ENST00000477605 LINC01554Q52M75 96 aa9.47□□□□□ -0.89
CCM2-209ENST00000477605 DMBT1Q9UGM3 2413 aaPredicted RBP9.47□□□□□ -0.89
CCM2-209ENST00000477605 LRP1Q07954 4544 aaKnown RBP9.42□□□□□ -0.9
CCM2-209ENST00000477605 CSAG1Q6PB30 78 aa9.42□□□□□ -0.9
CCM2-209ENST00000477605 RPL37P61927 97 aaKnown RBP9.4□□□□□ -0.9
CCM2-209ENST00000477605 FAT3Q8TDW7 4589 aa9.4□□□□□ -0.91
CCM2-209ENST00000477605 K7ERS5 55 aa9.36□□□□□ -0.91
CCM2-209ENST00000477605 J3QL48 77 aa9.33□□□□□ -0.92
CCM2-209ENST00000477605 XP32Q5T750 250 aa9.29□□□□□ -0.92
CCM2-209ENST00000477605 KRTAP3-3Q9BYR6 98 aa9.29□□□□□ -0.92
CCM2-209ENST00000477605 KRTAP10-6P60371 365 aaPredicted RBP9.25□□□□□ -0.93
CCM2-209ENST00000477605 KRTAP25-1Q3LHN0 102 aa9.24□□□□□ -0.93
CCM2-209ENST00000477605 S4R3F8 94 aa9.23□□□□□ -0.93
CCM2-209ENST00000477605 TNXBP22105 4242 aa9.23□□□□□ -0.93
CCM2-209ENST00000477605 MT1HL1P0DM35 61 aa9.18□□□□□ -0.94
CCM2-209ENST00000477605 KRTAP3-2Q9BYR7 98 aa9.18□□□□□ -0.94
CCM2-209ENST00000477605 HMCN2Q8NDA2 5059 aa9.17□□□□□ -0.94
CCM2-209ENST00000477605 ROMO1P60602 79 aa9.11□□□□□ -0.95
CCM2-209ENST00000477605 KRTAP13-4Q3LI77 160 aa9.09□□□□□ -0.95
CCM2-209ENST00000477605 P0C880 135 aa9□□□□□ -0.97
CCM2-209ENST00000477605 A0A0D9SG42 100 aa9□□□□□ -0.97
CCM2-209ENST00000477605 TPRXLQ17RH7 258 aa9□□□□□ -0.97
CCM2-209ENST00000477605 UBR4Q5T4S7 5183 aa8.96□□□□□ -0.97
CCM2-209ENST00000477605 LRP2P98164 4655 aa8.9□□□□□ -0.98
CCM2-209ENST00000477605 CRIPTQ9P021 101 aa8.89□□□□□ -0.99
CCM2-209ENST00000477605 H3BS24 57 aa8.88□□□□□ -0.99
CCM2-209ENST00000477605 M0QZ58 72 aa8.87□□□□□ -0.99
CCM2-209ENST00000477605 KRTAP12-2P59991 146 aa8.82□□□□□ -1
CCM2-209ENST00000477605 KRTAP12-1P59990 96 aa8.81□□□□□ -1
CCM2-209ENST00000477605 LPAP08519 4548 aa8.77□□□□□ -1.01
CCM2-209ENST00000477605 SPINT4Q6UDR6 99 aa8.73□□□□□ -1.01
CCM2-209ENST00000477605 RNF213Q63HN8 5207 aa8.69□□□□□ -1.02
CCM2-209ENST00000477605 SEC61BP60468 96 aaKnown RBP8.67□□□□□ -1.02
CCM2-209ENST00000477605 C10orf95Q9H7T3 257 aa8.63□□□□□ -1.03
CCM2-209ENST00000477605 R4GN34 69 aa8.55□□□□□ -1.04
CCM2-209ENST00000477605 MUC2Q02817 5179 aa8.46□□□□□ -1.05
CCM2-209ENST00000477605 KRTAP15-1Q3LI76 137 aa8.42□□□□□ -1.06
CCM2-209ENST00000477605 MUC17Q685J3 4493 aa8.41□□□□□ -1.06
CCM2-209ENST00000477605 KRTAP4-1Q9BYQ7 146 aa8.4□□□□□ -1.06
CCM2-209ENST00000477605 KRTAP19-2Q3LHN2 52 aa8.34□□□□□ -1.07
CCM2-209ENST00000477605 LORP23490 312 aaPredicted RBP8.33□□□□□ -1.08
CCM2-209ENST00000477605 FAT4Q6V0I7 4981 aa8.26□□□□□ -1.09
CCM2-209ENST00000477605 NDUFAF8A1L188 74 aa8.18□□□□□ -1.1
CCM2-209ENST00000477605 PP632Q6XCG6 107 aa8.15□□□□□ -1.11
CCM2-209ENST00000477605 CAMK2N1Q7Z7J9 78 aa8.12□□□□□ -1.11
CCM2-209ENST00000477605 LCE2AQ5TA79 106 aaPredicted RBP8.11□□□□□ -1.11
CCM2-209ENST00000477605 PLAC4Q8WY50 150 aa8.06□□□□□ -1.12
CCM2-209ENST00000477605 FLGP20930 4061 aaPredicted RBP7.96□□□□□ -1.13
CCM2-209ENST00000477605 KRTAP23-1A1A580 65 aa7.93□□□□□ -1.14
CCM2-209ENST00000477605 LCE2CQ5TA81 110 aa7.91□□□□□ -1.14
CCM2-209ENST00000477605 TNP1P09430 55 aa7.88□□□□□ -1.15
CCM2-209ENST00000477605 KRTAP9-2Q9BYQ4 174 aa7.85□□□□□ -1.15
CCM2-209ENST00000477605 MT1HP80294 61 aa7.8□□□□□ -1.16
CCM2-209ENST00000477605 SPRR2GQ9BYE4 73 aa7.77□□□□□ -1.17
CCM2-209ENST00000477605 LUZP6Q538Z0 58 aa7.72□□□□□ -1.17
CCM2-209ENST00000477605 KRTAP19-1Q8IUB9 90 aa7.66□□□□□ -1.18
CCM2-209ENST00000477605 LCE2DQ5TA82 110 aaPredicted RBP7.64□□□□□ -1.19
CCM2-209ENST00000477605 M0R2T5 61 aa7.63□□□□□ -1.19
CCM2-209ENST00000477605 SPRR5A0A1B0GTR4 108 aa7.56□□□□□ -1.2
CCM2-209ENST00000477605 KRTAP9-6A0A140TA67 174 aa7.56□□□□□ -1.2
CCM2-209ENST00000477605 FSIP2Q5CZC0 6907 aa7.51□□□□□ -1.21
CCM2-209ENST00000477605 MT2AP02795 61 aa7.48□□□□□ -1.21
CCM2-209ENST00000477605 KRTAP10-10P60014 251 aa7.47□□□□□ -1.21
CCM2-209ENST00000477605 MT1FP04733 61 aa7.46□□□□□ -1.22
CCM2-209ENST00000477605 KRTAP19-8Q3LI54 63 aa7.43□□□□□ -1.22
CCM2-209ENST00000477605 KRTAP9-8Q9BYQ0 159 aa7.43□□□□□ -1.22
CCM2-209ENST00000477605 CRCT1Q9UGL9 99 aa7.42□□□□□ -1.22
CCM2-209ENST00000477605 A0A0A0MQY5 61 aa7.37□□□□□ -1.23
CCM2-209ENST00000477605 LCE3AQ5TA76 89 aa7.37□□□□□ -1.23
CCM2-209ENST00000477605 KRTAP8-1Q8IUC2 63 aa7.29□□□□□ -1.24
CCM2-209ENST00000477605 MT1BP07438 61 aa7.26□□□□□ -1.25
CCM2-209ENST00000477605 KRTAP10-5P60370 271 aa7.23□□□□□ -1.25
CCM2-209ENST00000477605 USH2AO75445 5202 aa7.23□□□□□ -1.25
CCM2-209ENST00000477605 MT1XP80297 61 aa7.21□□□□□ -1.25
CCM2-209ENST00000477605 SSPOA2VEC9 5147 aa7.18□□□□□ -1.26
CCM2-209ENST00000477605 KRTAP9-3Q9BYQ3 159 aa7.16□□□□□ -1.26
CCM2-209ENST00000477605 LCE2BO14633 110 aa7.12□□□□□ -1.27
CCM2-209ENST00000477605 KRTAP10-12P60413 245 aa7.11□□□□□ -1.27
CCM2-209ENST00000477605 KRTAP12-3P60328 96 aa7.07□□□□□ -1.28
CCM2-209ENST00000477605 PRO2289Q9P1D8 64 aa7.04□□□□□ -1.28
CCM2-209ENST00000477605 FCGBPQ9Y6R7 5405 aaPredicted RBP6.97□□□□□ -1.29
CCM2-209ENST00000477605 KRTAP10-7P60409 375 aaPredicted RBP6.97□□□□□ -1.29
CCM2-209ENST00000477605 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.91□□□□□ -1.3
CCM2-209ENST00000477605 KRTAP19-6Q3LI70 58 aa6.85□□□□□ -1.31
CCM2-209ENST00000477605 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
CCM2-209ENST00000477605 MACF1Q9UPN3 7388 aaKnown RBP6.77□□□□□ -1.33
CCM2-209ENST00000477605 INE1O15225 51 aa6.74□□□□□ -1.33
CCM2-209ENST00000477605 KRTAP19-5Q3LI72 72 aa6.72□□□□□ -1.33
CCM2-209ENST00000477605 SYNE2Q8WXH0 6885 aaKnown RBP6.7□□□□□ -1.34
CCM2-209ENST00000477605 LCE3CQ5T5A8 94 aa6.67□□□□□ -1.34
CCM2-209ENST00000477605 KRTAP19-4Q3LI73 84 aa6.54□□□□□ -1.36
CCM2-209ENST00000477605 KRTAP6-3Q3LI67 103 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms