RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 LINC01558Q9Y6Z2 57 aa2.84□□□□□ -1.95
CCDC39-204ENST00000476379 PKD1P98161 4303 aa2.84□□□□□ -1.95
CCDC39-204ENST00000476379 MUC2Q02817 5179 aa2.84□□□□□ -1.95
CCDC39-204ENST00000476379 Q5VSD8 79 aa2.83□□□□□ -1.96
CCDC39-204ENST00000476379 KRTAP13-1Q8IUC0 172 aa2.83□□□□□ -1.96
CCDC39-204ENST00000476379 LRP2P98164 4655 aa2.82□□□□□ -1.96
CCDC39-204ENST00000476379 DMAC1Q96GE9 116 aa2.81□□□□□ -1.96
CCDC39-204ENST00000476379 LINC00483Q53H64 154 aa2.8□□□□□ -1.96
CCDC39-204ENST00000476379 UBR4Q5T4S7 5183 aa2.79□□□□□ -1.96
CCDC39-204ENST00000476379 A0A1B0GU33 70 aa2.78□□□□□ -1.96
CCDC39-204ENST00000476379 A0A1B0GVY2 172 aa2.78□□□□□ -1.96
CCDC39-204ENST00000476379 A6NN06 94 aa2.78□□□□□ -1.96
CCDC39-204ENST00000476379 LPAP08519 4548 aa2.78□□□□□ -1.96
CCDC39-204ENST00000476379 BIRC6Q9NR09 4857 aa2.76□□□□□ -1.97
CCDC39-204ENST00000476379 ALMS1Q8TCU4 4167 aa2.76□□□□□ -1.97
CCDC39-204ENST00000476379 XP32Q5T750 250 aa2.76□□□□□ -1.97
CCDC39-204ENST00000476379 C10orf95Q9H7T3 257 aa2.73□□□□□ -1.97
CCDC39-204ENST00000476379 KRTAP1-4P0C5Y4 121 aa2.73□□□□□ -1.97
CCDC39-204ENST00000476379 FAT4Q6V0I7 4981 aa2.71□□□□□ -1.98
CCDC39-204ENST00000476379 FSIP2Q5CZC0 6907 aa2.71□□□□□ -1.98
CCDC39-204ENST00000476379 KRTAP25-1Q3LHN0 102 aa2.71□□□□□ -1.98
CCDC39-204ENST00000476379 Q6ZSA8 131 aa2.71□□□□□ -1.98
CCDC39-204ENST00000476379 ROMO1P60602 79 aa2.7□□□□□ -1.98
CCDC39-204ENST00000476379 COX6B2Q6YFQ2 88 aa2.69□□□□□ -1.98
CCDC39-204ENST00000476379 C20orf166-AS1Q96NR2 134 aa2.68□□□□□ -1.98
CCDC39-204ENST00000476379 H0YAA0 97 aa2.68□□□□□ -1.98
CCDC39-204ENST00000476379 ASB16-AS1Q495Z4 193 aa2.68□□□□□ -1.98
CCDC39-204ENST00000476379 H1FX-AS1Q4G0G2 97 aa2.68□□□□□ -1.98
CCDC39-204ENST00000476379 PKHD1L1Q86WI1 4243 aa2.66□□□□□ -1.98
CCDC39-204ENST00000476379 S4R3F8 94 aa2.66□□□□□ -1.98
CCDC39-204ENST00000476379 KRTAP13-3Q3SY46 172 aa2.65□□□□□ -1.98
CCDC39-204ENST00000476379 KRTAP10-4P60372 401 aaPredicted RBP2.64□□□□□ -1.99
CCDC39-204ENST00000476379 P0C880 135 aa2.63□□□□□ -1.99
CCDC39-204ENST00000476379 RPL37P61927 97 aaKnown RBP2.63□□□□□ -1.99
CCDC39-204ENST00000476379 A8MUU9 505 aa2.62□□□□□ -1.99
CCDC39-204ENST00000476379 M0QZ58 72 aa2.62□□□□□ -1.99
CCDC39-204ENST00000476379 R4GN34 69 aa2.61□□□□□ -1.99
CCDC39-204ENST00000476379 KRTAP10-8P60410 259 aa2.61□□□□□ -1.99
CCDC39-204ENST00000476379 KRTAP3-1Q9BYR8 98 aa2.61□□□□□ -1.99
CCDC39-204ENST00000476379 MT1HL1P0DM35 61 aa2.6□□□□□ -1.99
CCDC39-204ENST00000476379 KRTAP23-1A1A580 65 aa2.57□□□□□ -2
CCDC39-204ENST00000476379 KRTAP13-4Q3LI77 160 aa2.56□□□□□ -2
CCDC39-204ENST00000476379 M0R2T5 61 aa2.56□□□□□ -2
CCDC39-204ENST00000476379 HMCN2Q8NDA2 5059 aa2.56□□□□□ -2
CCDC39-204ENST00000476379 TNXBP22105 4242 aa2.56□□□□□ -2
CCDC39-204ENST00000476379 PLAC4Q8WY50 150 aa2.55□□□□□ -2
CCDC39-204ENST00000476379 KRTAP12-2P59991 146 aa2.52□□□□□ -2.01
CCDC39-204ENST00000476379 TPRXLQ17RH7 258 aa2.5□□□□□ -2.01
CCDC39-204ENST00000476379 USH2AO75445 5202 aa2.48□□□□□ -2.01
CCDC39-204ENST00000476379 PP632Q6XCG6 107 aa2.47□□□□□ -2.01
CCDC39-204ENST00000476379 KRTAP10-6P60371 365 aaPredicted RBP2.46□□□□□ -2.01
CCDC39-204ENST00000476379 KRTAP4-1Q9BYQ7 146 aa2.46□□□□□ -2.02
CCDC39-204ENST00000476379 RPS29P62273 56 aaKnown RBP2.45□□□□□ -2.02
CCDC39-204ENST00000476379 KRTAP3-3Q9BYR6 98 aa2.44□□□□□ -2.02
CCDC39-204ENST00000476379 KRTAP12-1P59990 96 aa2.42□□□□□ -2.02
CCDC39-204ENST00000476379 LORP23490 312 aaPredicted RBP2.41□□□□□ -2.02
CCDC39-204ENST00000476379 KRTAP3-2Q9BYR7 98 aa2.4□□□□□ -2.02
CCDC39-204ENST00000476379 MUC17Q685J3 4493 aa2.37□□□□□ -2.03
CCDC39-204ENST00000476379 LOC100996750A0A140TA64 210 aa2.35□□□□□ -2.03
CCDC39-204ENST00000476379 KRTAP4-6Q9BYQ5 205 aa2.35□□□□□ -2.03
CCDC39-204ENST00000476379 OBSCNQ5VST9 7968 aa2.31□□□□□ -2.04
CCDC39-204ENST00000476379 KRTAP10-10P60014 251 aa2.3□□□□□ -2.04
CCDC39-204ENST00000476379 TNP1P09430 55 aa2.3□□□□□ -2.04
CCDC39-204ENST00000476379 PRO2289Q9P1D8 64 aa2.27□□□□□ -2.05
CCDC39-204ENST00000476379 KMT2DO14686 5537 aa2.26□□□□□ -2.05
CCDC39-204ENST00000476379 KRTAP15-1Q3LI76 137 aa2.26□□□□□ -2.05
CCDC39-204ENST00000476379 LCE2DQ5TA82 110 aaPredicted RBP2.26□□□□□ -2.05
CCDC39-204ENST00000476379 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
CCDC39-204ENST00000476379 MT1HP80294 61 aa2.21□□□□□ -2.06
CCDC39-204ENST00000476379 LCE2CQ5TA81 110 aa2.2□□□□□ -2.06
CCDC39-204ENST00000476379 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
CCDC39-204ENST00000476379 INE1O15225 51 aa2.18□□□□□ -2.06
CCDC39-204ENST00000476379 KRTAP19-2Q3LHN2 52 aa2.18□□□□□ -2.06
CCDC39-204ENST00000476379 FLGP20930 4061 aaPredicted RBP2.17□□□□□ -2.06
CCDC39-204ENST00000476379 DSTQ03001 7570 aaKnown RBP2.17□□□□□ -2.06
CCDC39-204ENST00000476379 MT1FP04733 61 aa2.15□□□□□ -2.06
CCDC39-204ENST00000476379 KRTAP9-8Q9BYQ0 159 aa2.15□□□□□ -2.07
CCDC39-204ENST00000476379 SYNE2Q8WXH0 6885 aaKnown RBP2.14□□□□□ -2.07
CCDC39-204ENST00000476379 LCE3AQ5TA76 89 aa2.13□□□□□ -2.07
CCDC39-204ENST00000476379 SYNE1Q8NF91 8797 aaKnown RBP2.13□□□□□ -2.07
CCDC39-204ENST00000476379 MT2AP02795 61 aa2.12□□□□□ -2.07
CCDC39-204ENST00000476379 CRCT1Q9UGL9 99 aa2.11□□□□□ -2.07
CCDC39-204ENST00000476379 MUC12Q9UKN1 5478 aa2.08□□□□□ -2.08
CCDC39-204ENST00000476379 MACF1Q9UPN3 7388 aaKnown RBP2.08□□□□□ -2.08
CCDC39-204ENST00000476379 LCE2AQ5TA79 106 aaPredicted RBP2.06□□□□□ -2.08
CCDC39-204ENST00000476379 FCGBPQ9Y6R7 5405 aaPredicted RBP2.05□□□□□ -2.08
CCDC39-204ENST00000476379 LCE2BO14633 110 aa2.05□□□□□ -2.08
CCDC39-204ENST00000476379 KRTAP10-12P60413 245 aa2.03□□□□□ -2.08
CCDC39-204ENST00000476379 KRTAP9-2Q9BYQ4 174 aa2.03□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP19-1Q8IUB9 90 aa2.02□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP12-3P60328 96 aa2.01□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP5-3Q6L8H2 238 aa1.99□□□□□ -2.09
CCDC39-204ENST00000476379 MDN1Q9NU22 5596 aa1.99□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP9-3Q9BYQ3 159 aa1.98□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP10-7P60409 375 aaPredicted RBP1.98□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP4-8A0A0G2JLE6 195 aa1.97□□□□□ -2.09
CCDC39-204ENST00000476379 KRTAP4-8Q9BYQ9 185 aa1.97□□□□□ -2.09
CCDC39-204ENST00000476379 MT1BP07438 61 aa1.95□□□□□ -2.1
CCDC39-204ENST00000476379 KRTAP4-7Q9BYR0 210 aa1.94□□□□□ -2.1
CCDC39-204ENST00000476379 KRTAP19-5Q3LI72 72 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms