RNA–Protein interactions for RNA: ENST00000476342.1

HOXB3-208, Transcript of homeobox B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXB3, Length 1,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-208ENST00000476342 DMAC1Q96GE9 116 aa13.84□□□□□ -0.19
HOXB3-208ENST00000476342 NDUFC1O43677 76 aa13.83□□□□□ -0.2
HOXB3-208ENST00000476342 KRTAP9-3Q9BYQ3 159 aa13.82□□□□□ -0.2
HOXB3-208ENST00000476342 SNURFQ9Y675 71 aa13.82□□□□□ -0.2
HOXB3-208ENST00000476342 C20orf197Q8N268 126 aa13.8□□□□□ -0.2
HOXB3-208ENST00000476342 FSIP2Q5CZC0 6907 aa13.75□□□□□ -0.21
HOXB3-208ENST00000476342 COX7CP15954 63 aa13.66□□□□□ -0.22
HOXB3-208ENST00000476342 ACYP2P14621 99 aa13.64□□□□□ -0.23
HOXB3-208ENST00000476342 KRTAP9-6A0A140TA67 174 aa13.64□□□□□ -0.23
HOXB3-208ENST00000476342 CRCT1Q9UGL9 99 aa13.64□□□□□ -0.23
HOXB3-208ENST00000476342 LCE2BO14633 110 aa13.62□□□□□ -0.23
HOXB3-208ENST00000476342 SPANXA2-OT1Q8N9U9 137 aa13.59□□□□□ -0.23
HOXB3-208ENST00000476342 USH2AO75445 5202 aa13.55□□□□□ -0.24
HOXB3-208ENST00000476342 H0YAA0 97 aa13.55□□□□□ -0.24
HOXB3-208ENST00000476342 ANAPC13Q9BS18 74 aa13.5□□□□□ -0.25
HOXB3-208ENST00000476342 SVIPQ8NHG7 77 aa13.44□□□□□ -0.26
HOXB3-208ENST00000476342 CHKB-CPT1BH3BT56 60 aa13.41□□□□□ -0.26
HOXB3-208ENST00000476342 ADM2Q7Z4H4 148 aa13.39□□□□□ -0.27
HOXB3-208ENST00000476342 SPTSSBQ8NFR3 76 aa13.39□□□□□ -0.27
HOXB3-208ENST00000476342 CRIPTQ9P021 101 aa13.39□□□□□ -0.27
HOXB3-208ENST00000476342 KRTAP19-1Q8IUB9 90 aa13.38□□□□□ -0.27
HOXB3-208ENST00000476342 SPRR2GQ9BYE4 73 aa13.33□□□□□ -0.28
HOXB3-208ENST00000476342 SSPOA2VEC9 5147 aa13.31□□□□□ -0.28
HOXB3-208ENST00000476342 H7BZZ5 65 aa13.3□□□□□ -0.28
HOXB3-208ENST00000476342 CYSTM1Q9H1C7 97 aa13.3□□□□□ -0.28
HOXB3-208ENST00000476342 CCDC179H3BU77 68 aa13.17□□□□□ -0.3
HOXB3-208ENST00000476342 COA5Q86WW8 74 aa13.16□□□□□ -0.3
HOXB3-208ENST00000476342 P0C880 135 aa13.14□□□□□ -0.31
HOXB3-208ENST00000476342 KRTAP19-8Q3LI54 63 aa13.14□□□□□ -0.31
HOXB3-208ENST00000476342 Q5VV11 94 aa13.13□□□□□ -0.31
HOXB3-208ENST00000476342 KRTAP3-2Q9BYR7 98 aa13.11□□□□□ -0.31
HOXB3-208ENST00000476342 KRTAP19-6Q3LI70 58 aa13.08□□□□□ -0.32
HOXB3-208ENST00000476342 R4GN34 69 aa13.05□□□□□ -0.32
HOXB3-208ENST00000476342 MT1BP07438 61 aa13.05□□□□□ -0.32
HOXB3-208ENST00000476342 M0QZ58 72 aa12.96□□□□□ -0.34
HOXB3-208ENST00000476342 FCGBPQ9Y6R7 5405 aaPredicted RBP12.93□□□□□ -0.34
HOXB3-208ENST00000476342 ATP5EP56381 51 aaPredicted RBP12.91□□□□□ -0.34
HOXB3-208ENST00000476342 RPS28P62857 69 aaKnown RBP12.82□□□□□ -0.36
HOXB3-208ENST00000476342 SEC61GP60059 68 aa12.78□□□□□ -0.36
HOXB3-208ENST00000476342 TMEM258P61165 79 aa12.77□□□□□ -0.37
HOXB3-208ENST00000476342 A6NN06 94 aa12.73□□□□□ -0.37
HOXB3-208ENST00000476342 LINC01554Q52M75 96 aa12.73□□□□□ -0.37
HOXB3-208ENST00000476342 SERP1Q9Y6X1 66 aa12.72□□□□□ -0.37
HOXB3-208ENST00000476342 PLAC4Q8WY50 150 aa12.71□□□□□ -0.38
HOXB3-208ENST00000476342 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.65□□□□□ -0.38
HOXB3-208ENST00000476342 KRTAP10-5P60370 271 aa12.65□□□□□ -0.38
HOXB3-208ENST00000476342 A0A1B0GU69 56 aa12.51□□□□□ -0.41
HOXB3-208ENST00000476342 MACF1Q9UPN3 7388 aaKnown RBP12.5□□□□□ -0.41
HOXB3-208ENST00000476342 KRTAP13-4Q3LI77 160 aa12.5□□□□□ -0.41
HOXB3-208ENST00000476342 PRO2289Q9P1D8 64 aa12.48□□□□□ -0.41
HOXB3-208ENST00000476342 A0A1B0GU33 70 aa12.45□□□□□ -0.42
HOXB3-208ENST00000476342 MT1XP80297 61 aa12.38□□□□□ -0.43
HOXB3-208ENST00000476342 KRTAP9-7A8MTY7 169 aa12.34□□□□□ -0.43
HOXB3-208ENST00000476342 PRR15LQ9BU68 103 aa12.33□□□□□ -0.44
HOXB3-208ENST00000476342 SPATA8Q6RVD6 105 aa12.31□□□□□ -0.44
HOXB3-208ENST00000476342 LINC01558Q9Y6Z2 57 aa12.29□□□□□ -0.44
HOXB3-208ENST00000476342 SYNE2Q8WXH0 6885 aaKnown RBP12.26□□□□□ -0.45
HOXB3-208ENST00000476342 A0A0D9SG42 100 aa12.22□□□□□ -0.45
HOXB3-208ENST00000476342 SMIM26A0A096LP01 95 aa12.2□□□□□ -0.46
HOXB3-208ENST00000476342 CAMK2N1Q7Z7J9 78 aa12.1□□□□□ -0.47
HOXB3-208ENST00000476342 KRTAP6-3Q3LI67 103 aa12.03□□□□□ -0.48
HOXB3-208ENST00000476342 SPINT4Q6UDR6 99 aa12.03□□□□□ -0.48
HOXB3-208ENST00000476342 KRTAP12-2P59991 146 aa12□□□□□ -0.49
HOXB3-208ENST00000476342 V9GYY9 64 aa11.99□□□□□ -0.49
HOXB3-208ENST00000476342 KRTAP12-1P59990 96 aa11.97□□□□□ -0.49
HOXB3-208ENST00000476342 PRO0628Q9UI54 55 aa11.97□□□□□ -0.49
HOXB3-208ENST00000476342 A8MU10 97 aa11.95□□□□□ -0.5
HOXB3-208ENST00000476342 UQCR11O14957 56 aa11.92□□□□□ -0.5
HOXB3-208ENST00000476342 Q1T7F1 81 aa11.89□□□□□ -0.51
HOXB3-208ENST00000476342 KRTAP10-7P60409 375 aaPredicted RBP11.82□□□□□ -0.52
HOXB3-208ENST00000476342 KMT2DO14686 5537 aa11.82□□□□□ -0.52
HOXB3-208ENST00000476342 KRTAP10-12P60413 245 aa11.78□□□□□ -0.52
HOXB3-208ENST00000476342 PSPHP1O15172 72 aa11.77□□□□□ -0.52
HOXB3-208ENST00000476342 KRTAP5-9P26371 169 aa11.74□□□□□ -0.53
HOXB3-208ENST00000476342 KRTAP8-1Q8IUC2 63 aa11.7□□□□□ -0.54
HOXB3-208ENST00000476342 MIR22HGQ0VDD5 57 aa11.68□□□□□ -0.54
HOXB3-208ENST00000476342 KRTAP4-8A0A0G2JLE6 195 aa11.64□□□□□ -0.55
HOXB3-208ENST00000476342 KRTAP4-8Q9BYQ9 185 aa11.64□□□□□ -0.55
HOXB3-208ENST00000476342 BRK1Q8WUW1 75 aa11.61□□□□□ -0.55
HOXB3-208ENST00000476342 MUC12Q9UKN1 5478 aa11.58□□□□□ -0.56
HOXB3-208ENST00000476342 SPRR2FQ96RM1 72 aa11.55□□□□□ -0.56
HOXB3-208ENST00000476342 A6NED7 52 aa11.44□□□□□ -0.58
HOXB3-208ENST00000476342 K7ERS5 55 aa11.41□□□□□ -0.58
HOXB3-208ENST00000476342 NEBP20929 6669 aa11.4□□□□□ -0.58
HOXB3-208ENST00000476342 C10orf95Q9H7T3 257 aa11.38□□□□□ -0.59
HOXB3-208ENST00000476342 MDN1Q9NU22 5596 aa11.34□□□□□ -0.59
HOXB3-208ENST00000476342 TNP1P09430 55 aa11.31□□□□□ -0.6
HOXB3-208ENST00000476342 SPRR2EP22531 72 aa11.23□□□□□ -0.61
HOXB3-208ENST00000476342 SPRR2BP35325 72 aa11.23□□□□□ -0.61
HOXB3-208ENST00000476342 SPRR2AP35326 72 aa11.23□□□□□ -0.61
HOXB3-208ENST00000476342 PMAIP1Q13794 54 aa11.23□□□□□ -0.61
HOXB3-208ENST00000476342 LCE1AQ5T7P2 110 aa11.13□□□□□ -0.63
HOXB3-208ENST00000476342 KRTAP19-7Q3SYF9 63 aa11.05□□□□□ -0.64
HOXB3-208ENST00000476342 CDC42SE1Q9NRR8 79 aa11.05□□□□□ -0.64
HOXB3-208ENST00000476342 LCE3AQ5TA76 89 aa11□□□□□ -0.65
HOXB3-208ENST00000476342 KRTAP25-1Q3LHN0 102 aa10.96□□□□□ -0.65
HOXB3-208ENST00000476342 MT1EP04732 61 aa10.94□□□□□ -0.66
HOXB3-208ENST00000476342 KRTAP19-5Q3LI72 72 aa10.94□□□□□ -0.66
HOXB3-208ENST00000476342 KTN1-AS1Q86SY8 53 aa10.94□□□□□ -0.66
HOXB3-208ENST00000476342 KRTAP20-1Q3LI63 56 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms