RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, humanhuman

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-215ENST00000474539 TENM1Q9UKZ4 2725 aa2.2□□□□□ -2.06
CCNL1-215ENST00000474539 KMT2AQ03164 3969 aa2.19□□□□□ -2.06
CCNL1-215ENST00000474539 P0C880 135 aa2.19□□□□□ -2.06
CCNL1-215ENST00000474539 KRTAP10-4P60372 401 aaPredicted RBP2.19□□□□□ -2.06
CCNL1-215ENST00000474539 KRTAP23-1A1A580 65 aa2.18□□□□□ -2.06
CCNL1-215ENST00000474539 DNAH9Q9NYC9 4486 aa2.18□□□□□ -2.06
CCNL1-215ENST00000474539 STARD9Q9P2P6 4700 aa2.18□□□□□ -2.06
CCNL1-215ENST00000474539 HECTD4Q9Y4D8 3996 aa2.18□□□□□ -2.06
CCNL1-215ENST00000474539 HUWE1Q7Z6Z7 4374 aaKnown RBP2.17□□□□□ -2.06
CCNL1-215ENST00000474539 DNAH2Q9P225 4427 aa2.17□□□□□ -2.06
CCNL1-215ENST00000474539 KRTAP4-12Q9BQ66 201 aa2.16□□□□□ -2.06
CCNL1-215ENST00000474539 ALMS1Q8TCU4 4167 aa2.16□□□□□ -2.06
CCNL1-215ENST00000474539 FAT2Q9NYQ8 4349 aa2.16□□□□□ -2.06
CCNL1-215ENST00000474539 LORP23490 312 aaPredicted RBP2.16□□□□□ -2.06
CCNL1-215ENST00000474539 KRTAP19-4Q3LI73 84 aa2.16□□□□□ -2.06
CCNL1-215ENST00000474539 MEGF8Q7Z7M0 2845 aa2.16□□□□□ -2.06
CCNL1-215ENST00000474539 VPS13DQ5THJ4 4388 aa2.14□□□□□ -2.07
CCNL1-215ENST00000474539 KRTAP9-2Q9BYQ4 174 aa2.14□□□□□ -2.07
CCNL1-215ENST00000474539 SACSQ9NZJ4 4579 aa2.13□□□□□ -2.07
CCNL1-215ENST00000474539 DNAH10Q8IVF4 4471 aa2.13□□□□□ -2.07
CCNL1-215ENST00000474539 PLECQ15149 4684 aaKnown RBP2.13□□□□□ -2.07
CCNL1-215ENST00000474539 TENM2Q9NT68 2774 aa2.13□□□□□ -2.07
CCNL1-215ENST00000474539 NBEAL2Q6ZNJ1 2754 aa2.12□□□□□ -2.07
CCNL1-215ENST00000474539 PKD1P98161 4303 aa2.12□□□□□ -2.07
CCNL1-215ENST00000474539 PKHD1P08F94 4074 aa2.12□□□□□ -2.07
CCNL1-215ENST00000474539 DNAH6Q9C0G6 4158 aa2.11□□□□□ -2.07
CCNL1-215ENST00000474539 FBN3Q75N90 2809 aa2.1□□□□□ -2.07
CCNL1-215ENST00000474539 KRTAP12-1P59990 96 aa2.1□□□□□ -2.07
CCNL1-215ENST00000474539 EPPK1P58107 5090 aaKnown RBP2.09□□□□□ -2.07
CCNL1-215ENST00000474539 RYR2Q92736 4967 aa2.09□□□□□ -2.07
CCNL1-215ENST00000474539 KRTAP9-9Q9BYP9 154 aa2.09□□□□□ -2.07
CCNL1-215ENST00000474539 KRTAP9-4Q9BYQ2 154 aa2.09□□□□□ -2.07
CCNL1-215ENST00000474539 KRTAP10-12P60413 245 aa2.09□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP15-1Q3LI76 137 aa2.09□□□□□ -2.08
CCNL1-215ENST00000474539 TENM3Q9P273 2699 aa2.08□□□□□ -2.08
CCNL1-215ENST00000474539 VPS13BQ7Z7G8 4022 aa2.07□□□□□ -2.08
CCNL1-215ENST00000474539 DNAH11Q96DT5 4516 aa2.07□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP9-6A0A140TA67 174 aa2.06□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP3-1Q9BYR8 98 aa2.06□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP4-2Q9BYR5 136 aa2.06□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP4-5Q9BYR2 181 aa2.05□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP12-2P59991 146 aa2.05□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP4-8A0A0G2JLE6 195 aa2.04□□□□□ -2.08
CCNL1-215ENST00000474539 TGP01266 2768 aa2.04□□□□□ -2.08
CCNL1-215ENST00000474539 DNAH5Q8TE73 4624 aa2.03□□□□□ -2.08
CCNL1-215ENST00000474539 KRTAP4-7Q9BYR0 210 aa2.03□□□□□ -2.08
CCNL1-215ENST00000474539 NDUFAF8A1L188 74 aa2.02□□□□□ -2.09
CCNL1-215ENST00000474539 KRTAP10-6P60371 365 aaPredicted RBP2.02□□□□□ -2.09
CCNL1-215ENST00000474539 KRTAP8-1Q8IUC2 63 aa2.02□□□□□ -2.09
CCNL1-215ENST00000474539 DNAH17Q9UFH2 4485 aa2.02□□□□□ -2.09
CCNL1-215ENST00000474539 MYCBP2O75592 4640 aa2.01□□□□□ -2.09
CCNL1-215ENST00000474539 H3BS24 57 aa2□□□□□ -2.09
CCNL1-215ENST00000474539 DNAH8Q96JB1 4490 aa2□□□□□ -2.09
CCNL1-215ENST00000474539 PCLOQ9Y6V0 5065 aa1.99□□□□□ -2.09
CCNL1-215ENST00000474539 FAT3Q8TDW7 4589 aa1.99□□□□□ -2.09
CCNL1-215ENST00000474539 PKHD1L1Q86WI1 4243 aa1.98□□□□□ -2.09
CCNL1-215ENST00000474539 KRTAP12-3P60328 96 aa1.98□□□□□ -2.09
CCNL1-215ENST00000474539 MT1HP80294 61 aa1.97□□□□□ -2.09
CCNL1-215ENST00000474539 INE1O15225 51 aa1.97□□□□□ -2.09
CCNL1-215ENST00000474539 SPRR2GQ9BYE4 73 aa1.96□□□□□ -2.1
CCNL1-215ENST00000474539 HSPG2P98160 4391 aa1.95□□□□□ -2.1
CCNL1-215ENST00000474539 HERC1Q15751 4861 aa1.95□□□□□ -2.1
CCNL1-215ENST00000474539 KRTAP4-9Q9BYQ8 210 aa1.94□□□□□ -2.1
CCNL1-215ENST00000474539 ABCA13Q86UQ4 5058 aa1.94□□□□□ -2.1
CCNL1-215ENST00000474539 APOBP04114 4563 aaKnown RBP1.93□□□□□ -2.1
CCNL1-215ENST00000474539 LRP1BQ9NZR2 4599 aa1.93□□□□□ -2.1
CCNL1-215ENST00000474539 KRTAP19-1Q8IUB9 90 aa1.92□□□□□ -2.1
CCNL1-215ENST00000474539 MT2AP02795 61 aa1.92□□□□□ -2.1
CCNL1-215ENST00000474539 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
CCNL1-215ENST00000474539 RYR1P21817 5038 aa1.91□□□□□ -2.1
CCNL1-215ENST00000474539 DYNC1H1Q14204 4646 aaKnown RBP1.91□□□□□ -2.1
CCNL1-215ENST00000474539 KRTAP10-7P60409 375 aaPredicted RBP1.9□□□□□ -2.11
CCNL1-215ENST00000474539 TNXBP22105 4242 aa1.87□□□□□ -2.11
CCNL1-215ENST00000474539 KRTAP19-8Q3LI54 63 aa1.87□□□□□ -2.11
CCNL1-215ENST00000474539 HERC2O95714 4834 aa1.86□□□□□ -2.11
CCNL1-215ENST00000474539 LCE3AQ5TA76 89 aa1.85□□□□□ -2.11
CCNL1-215ENST00000474539 BIRC6Q9NR09 4857 aa1.83□□□□□ -2.12
CCNL1-215ENST00000474539 SPRR2FQ96RM1 72 aa1.83□□□□□ -2.12
CCNL1-215ENST00000474539 FAT1Q14517 4588 aa1.83□□□□□ -2.12
CCNL1-215ENST00000474539 KIAA1109Q2LD37 5005 aa1.83□□□□□ -2.12
CCNL1-215ENST00000474539 KRTAP10-5P60370 271 aa1.83□□□□□ -2.12
CCNL1-215ENST00000474539 KRTAP4-1Q9BYQ7 146 aa1.82□□□□□ -2.12
CCNL1-215ENST00000474539 LPAP08519 4548 aa1.82□□□□□ -2.12
CCNL1-215ENST00000474539 MT1FP04733 61 aa1.82□□□□□ -2.12
CCNL1-215ENST00000474539 LRP1Q07954 4544 aaKnown RBP1.81□□□□□ -2.12
CCNL1-215ENST00000474539 SPRR2EP22531 72 aa1.8□□□□□ -2.12
CCNL1-215ENST00000474539 SPRR2BP35325 72 aa1.8□□□□□ -2.12
CCNL1-215ENST00000474539 SPRR2AP35326 72 aa1.8□□□□□ -2.12
CCNL1-215ENST00000474539 CRCT1Q9UGL9 99 aa1.8□□□□□ -2.12
CCNL1-215ENST00000474539 MUC2Q02817 5179 aa1.79□□□□□ -2.12
CCNL1-215ENST00000474539 KRTAP9-8Q9BYQ0 159 aa1.79□□□□□ -2.12
CCNL1-215ENST00000474539 SPRR2DP22532 72 aa1.77□□□□□ -2.13
CCNL1-215ENST00000474539 KRTAP12-4P60329 112 aa1.76□□□□□ -2.13
CCNL1-215ENST00000474539 KRTAP4-11Q9BYQ6 195 aa1.76□□□□□ -2.13
CCNL1-215ENST00000474539 UBR4Q5T4S7 5183 aa1.75□□□□□ -2.13
CCNL1-215ENST00000474539 HMCN2Q8NDA2 5059 aa1.75□□□□□ -2.13
CCNL1-215ENST00000474539 MT1GP13640 62 aa1.75□□□□□ -2.13
CCNL1-215ENST00000474539 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.74□□□□□ -2.13
CCNL1-215ENST00000474539 LCE1DQ5T752 114 aa1.73□□□□□ -2.13
CCNL1-215ENST00000474539 RNF213Q63HN8 5207 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms