RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, humanhuman

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-215ENST00000474539 NISCHQ9Y2I1 1504 aa8.27□□□□□ -1.09
CCNL1-215ENST00000474539 DCAF8L2P0C7V8 631 aa8.07□□□□□ -1.12
CCNL1-215ENST00000474539 FAM9AQ8IZU1 332 aaPredicted RBP7.82□□□□□ -1.16
CCNL1-215ENST00000474539 APLP2Q06481 763 aa7.38□□□□□ -1.23
CCNL1-215ENST00000474539 SUPT5HO00267 1087 aaKnown RBP7.32□□□□□ -1.24
CCNL1-215ENST00000474539 SHROOM4Q9ULL8 1493 aa7.22□□□□□ -1.25
CCNL1-215ENST00000474539 CCDC180Q9P1Z9 1646 aa7.17□□□□□ -1.26
CCNL1-215ENST00000474539 ABCC9O60706 1549 aa7.15□□□□□ -1.26
CCNL1-215ENST00000474539 RB1CC1Q8TDY2 1594 aa7.05□□□□□ -1.28
CCNL1-215ENST00000474539 TRIM41Q8WV44 630 aa7.05□□□□□ -1.28
CCNL1-215ENST00000474539 PELP1Q8IZL8 1130 aaKnown RBP7.01□□□□□ -1.29
CCNL1-215ENST00000474539 NACADO15069 1562 aa6.98□□□□□ -1.29
CCNL1-215ENST00000474539 UBTFP17480 764 aaKnown RBP6.96□□□□□ -1.3
CCNL1-215ENST00000474539 ATP1B4Q9UN42 357 aaPredicted RBP6.93□□□□□ -1.3
CCNL1-215ENST00000474539 MYT1LQ9UL68 1186 aa6.93□□□□□ -1.3
CCNL1-215ENST00000474539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.89□□□□□ -1.31
CCNL1-215ENST00000474539 HNRNPUL2Q1KMD3 747 aaKnown RBP6.89□□□□□ -1.31
CCNL1-215ENST00000474539 PABPN1Q86U42 306 aaKnown RBP eCLIP6.89□□□□□ -1.318e-6■□□□□ 8.9
CCNL1-215ENST00000474539 NPM1P06748 294 aaKnown RBP eCLIP6.87□□□□□ -1.31
CCNL1-215ENST00000474539 ZEB1P37275 1124 aaPredicted RBP6.87□□□□□ -1.31
CCNL1-215ENST00000474539 CDK11AQ9UQ88 783 aaPredicted RBP6.84□□□□□ -1.31
CCNL1-215ENST00000474539 ZCCHC6Q5VYS8 1495 aaKnown RBP6.83□□□□□ -1.32
CCNL1-215ENST00000474539 ACIN1Q9UKV3 1341 aaKnown RBP6.83□□□□□ -1.32
CCNL1-215ENST00000474539 DCAF1Q9Y4B6 1507 aa6.81□□□□□ -1.32
CCNL1-215ENST00000474539 SCRIBQ14160 1630 aa6.81□□□□□ -1.32
CCNL1-215ENST00000474539 ESF1Q9H501 851 aaKnown RBP6.77□□□□□ -1.33
CCNL1-215ENST00000474539 MYO15BQ96JP2 1530 aa6.77□□□□□ -1.33
CCNL1-215ENST00000474539 EHMT2Q96KQ7 1210 aa6.73□□□□□ -1.33
CCNL1-215ENST00000474539 FBLN2P98095 1184 aa6.73□□□□□ -1.33
CCNL1-215ENST00000474539 RANGAP1P46060 587 aaPredicted RBP6.73□□□□□ -1.33
CCNL1-215ENST00000474539 CCER1Q8TC90 406 aaPredicted RBP6.72□□□□□ -1.33
CCNL1-215ENST00000474539 ERCC6Q03468 1493 aa6.7□□□□□ -1.34
CCNL1-215ENST00000474539 BAZ1BQ9UIG0 1483 aaKnown RBP6.67□□□□□ -1.34
CCNL1-215ENST00000474539 TTBK1Q5TCY1 1321 aaPredicted RBP6.65□□□□□ -1.34
CCNL1-215ENST00000474539 CHMP7Q8WUX9 453 aaPredicted RBP6.65□□□□□ -1.35
CCNL1-215ENST00000474539 BAZ1AQ9NRL2 1556 aaPredicted RBP6.65□□□□□ -1.35
CCNL1-215ENST00000474539 PDS5BQ9NTI5 1447 aa6.65□□□□□ -1.35
CCNL1-215ENST00000474539 SMARCA2P51531 1590 aa6.64□□□□□ -1.35
CCNL1-215ENST00000474539 EEA1Q15075 1411 aa6.64□□□□□ -1.35
CCNL1-215ENST00000474539 CSRNP3Q8WYN3 585 aa6.58□□□□□ -1.36
CCNL1-215ENST00000474539 NEFMP07197 916 aa6.58□□□□□ -1.36
CCNL1-215ENST00000474539 CENPBP07199 599 aaPredicted RBP6.57□□□□□ -1.36
CCNL1-215ENST00000474539 RSF1Q96T23 1441 aaPredicted RBP6.57□□□□□ -1.36
CCNL1-215ENST00000474539 ABCC8Q09428 1581 aa6.57□□□□□ -1.36
CCNL1-215ENST00000474539 NEFLP07196 543 aa6.57□□□□□ -1.36
CCNL1-215ENST00000474539 STAG3Q9UJ98 1225 aa6.55□□□□□ -1.36
CCNL1-215ENST00000474539 BCANQ96GW7 911 aa6.54□□□□□ -1.36
CCNL1-215ENST00000474539 PCGF6Q9BYE7 350 aa6.53□□□□□ -1.36
CCNL1-215ENST00000474539 TRIM26Q12899 539 aaPredicted RBP6.53□□□□□ -1.36
CCNL1-215ENST00000474539 TRIM52Q96A61 297 aa6.53□□□□□ -1.36
CCNL1-215ENST00000474539 KIF27Q86VH2 1401 aa6.53□□□□□ -1.36
CCNL1-215ENST00000474539 FAM50AQ14320 339 aaKnown RBP6.53□□□□□ -1.36
CCNL1-215ENST00000474539 TSPY4P0CV99 314 aa6.52□□□□□ -1.37
CCNL1-215ENST00000474539 TSPY10P0CW01 314 aa6.52□□□□□ -1.37
CCNL1-215ENST00000474539 HDGFP51858 240 aaKnown RBP6.52□□□□□ -1.37
CCNL1-215ENST00000474539 PLEKHD1A6NEE1 506 aa6.51□□□□□ -1.37
CCNL1-215ENST00000474539 CARMIL2Q6F5E8 1435 aa6.51□□□□□ -1.37
CCNL1-215ENST00000474539 CHIC1Q5VXU3 224 aa6.51□□□□□ -1.37
CCNL1-215ENST00000474539 WRNQ14191 1432 aaPredicted RBP eCLIP6.5□□□□□ -1.37
CCNL1-215ENST00000474539 SLC24A1O60721 1099 aa6.5□□□□□ -1.37
CCNL1-215ENST00000474539 SLC4A1APQ9BWU0 796 aaKnown RBP6.49□□□□□ -1.37
CCNL1-215ENST00000474539 CECR2Q9BXF3 1484 aa6.48□□□□□ -1.37
CCNL1-215ENST00000474539 CEP164Q9UPV0 1460 aa6.46□□□□□ -1.37
CCNL1-215ENST00000474539 ITGAEP38570 1179 aa6.46□□□□□ -1.37
CCNL1-215ENST00000474539 CLIP1P30622 1438 aa6.46□□□□□ -1.38
CCNL1-215ENST00000474539 ZBTB47Q9UFB7 747 aaPredicted RBP6.44□□□□□ -1.38
CCNL1-215ENST00000474539 MTUS2Q5JR59 1369 aa6.44□□□□□ -1.38
CCNL1-215ENST00000474539 FHAD1B1AJZ9 1412 aa6.43□□□□□ -1.38
CCNL1-215ENST00000474539 ZNF777Q9ULD5 760 aaPredicted RBP6.42□□□□□ -1.38
CCNL1-215ENST00000474539 CADPSQ9ULU8 1353 aa6.42□□□□□ -1.38
CCNL1-215ENST00000474539 CEP162Q5TB80 1403 aa6.42□□□□□ -1.38
CCNL1-215ENST00000474539 KANK1Q14678 1352 aa6.42□□□□□ -1.38
CCNL1-215ENST00000474539 ERICH6Q7L0X2 663 aa6.41□□□□□ -1.38
CCNL1-215ENST00000474539 GOLGA3Q08378 1498 aa6.41□□□□□ -1.38
CCNL1-215ENST00000474539 POLR3GLQ9BT43 218 aa6.4□□□□□ -1.38
CCNL1-215ENST00000474539 ARID4BQ4LE39 1312 aaPredicted RBP6.39□□□□□ -1.39
CCNL1-215ENST00000474539 PPP1R15AO75807 674 aaPredicted RBP6.39□□□□□ -1.39
CCNL1-215ENST00000474539 TRHP20396 242 aaPredicted RBP6.39□□□□□ -1.39
CCNL1-215ENST00000474539 CDCA8Q53HL2 280 aa6.38□□□□□ -1.39
CCNL1-215ENST00000474539 DAXXQ9UER7 740 aaPredicted RBP6.38□□□□□ -1.39
CCNL1-215ENST00000474539 RSPH4AQ5TD94 716 aa6.38□□□□□ -1.39
CCNL1-215ENST00000474539 NPM2Q86SE8 214 aaKnown RBP6.36□□□□□ -1.39
CCNL1-215ENST00000474539 OSCARQ8IYS5 282 aa6.36□□□□□ -1.39
CCNL1-215ENST00000474539 TOP2AP11388 1531 aaKnown RBP6.36□□□□□ -1.39
CCNL1-215ENST00000474539 CHGAP10645 457 aaKnown RBP6.35□□□□□ -1.39
CCNL1-215ENST00000474539 SOGA1O94964 1423 aa6.35□□□□□ -1.39
CCNL1-215ENST00000474539 P3H3Q8IVL6 736 aa6.34□□□□□ -1.39
CCNL1-215ENST00000474539 FOXD1Q16676 465 aa6.34□□□□□ -1.39
CCNL1-215ENST00000474539 NCAPD3P42695 1498 aa6.33□□□□□ -1.4
CCNL1-215ENST00000474539 ATAD2BQ9ULI0 1458 aa6.33□□□□□ -1.4
CCNL1-215ENST00000474539 CARMIL1Q5VZK9 1371 aa6.33□□□□□ -1.4
CCNL1-215ENST00000474539 FMN1Q68DA7 1419 aa6.33□□□□□ -1.4
CCNL1-215ENST00000474539 CFDP1Q9UEE9 299 aaPredicted RBP6.33□□□□□ -1.4
CCNL1-215ENST00000474539 C14orf37Q86TY3 774 aa6.32□□□□□ -1.4
CCNL1-215ENST00000474539 CUX2O14529 1486 aa6.32□□□□□ -1.4
CCNL1-215ENST00000474539 EFCAB2Q5VUJ9 269 aa6.32□□□□□ -1.4
CCNL1-215ENST00000474539 TONSLQ96HA7 1378 aa6.32□□□□□ -1.4
CCNL1-215ENST00000474539 AEBP2Q6ZN18 517 aaPredicted RBP6.31□□□□□ -1.4
CCNL1-215ENST00000474539 CCNB3Q8WWL7 1395 aa6.31□□□□□ -1.4
CCNL1-215ENST00000474539 EIF5BO60841 1220 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms