RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 SPATA8Q6RVD6 105 aa11.46□□□□□ -0.57
SMIM11A-204ENST00000474455 LPAP08519 4548 aa11.43□□□□□ -0.58
SMIM11A-204ENST00000474455 IGKV2D-30A0A075B6S6 120 aa11.38□□□□□ -0.59
SMIM11A-204ENST00000474455 UQCR11O14957 56 aa11.38□□□□□ -0.59
SMIM11A-204ENST00000474455 C9orf92A6NGG3 77 aa11.34□□□□□ -0.59
SMIM11A-204ENST00000474455 MIR22HGQ0VDD5 57 aa11.34□□□□□ -0.59
SMIM11A-204ENST00000474455 LRP2P98164 4655 aa11.27□□□□□ -0.61
SMIM11A-204ENST00000474455 HMCN2Q8NDA2 5059 aa11.25□□□□□ -0.61
SMIM11A-204ENST00000474455 PRAC1Q96KF2 57 aa11.14□□□□□ -0.63
SMIM11A-204ENST00000474455 TPRXLQ17RH7 258 aa11.13□□□□□ -0.63
SMIM11A-204ENST00000474455 XP32Q5T750 250 aa11.12□□□□□ -0.63
SMIM11A-204ENST00000474455 ADM2Q7Z4H4 148 aa11.08□□□□□ -0.64
SMIM11A-204ENST00000474455 C20orf166-AS1Q96NR2 134 aa11.05□□□□□ -0.64
SMIM11A-204ENST00000474455 A8MUU9 505 aa11.04□□□□□ -0.64
SMIM11A-204ENST00000474455 LINC01554Q52M75 96 aa11.01□□□□□ -0.65
SMIM11A-204ENST00000474455 RPL37P61927 97 aaKnown RBP10.96□□□□□ -0.65
SMIM11A-204ENST00000474455 MUC17Q685J3 4493 aa10.91□□□□□ -0.66
SMIM11A-204ENST00000474455 CSAG1Q6PB30 78 aa10.86□□□□□ -0.67
SMIM11A-204ENST00000474455 H0YAA0 97 aa10.85□□□□□ -0.67
SMIM11A-204ENST00000474455 UBR4Q5T4S7 5183 aa10.85□□□□□ -0.67
SMIM11A-204ENST00000474455 A0A1B0GU33 70 aa10.84□□□□□ -0.67
SMIM11A-204ENST00000474455 KRTAP3-1Q9BYR8 98 aa10.83□□□□□ -0.68
SMIM11A-204ENST00000474455 H1FX-AS1Q4G0G2 97 aa10.81□□□□□ -0.68
SMIM11A-204ENST00000474455 MUC2Q02817 5179 aa10.79□□□□□ -0.68
SMIM11A-204ENST00000474455 SEC61BP60468 96 aaKnown RBP10.72□□□□□ -0.69
SMIM11A-204ENST00000474455 KRTAP4-1Q9BYQ7 146 aa10.72□□□□□ -0.69
SMIM11A-204ENST00000474455 COX6B2Q6YFQ2 88 aa10.71□□□□□ -0.69
SMIM11A-204ENST00000474455 RNF213Q63HN8 5207 aa10.68□□□□□ -0.7
SMIM11A-204ENST00000474455 K7ERS5 55 aa10.64□□□□□ -0.71
SMIM11A-204ENST00000474455 KRTAP25-1Q3LHN0 102 aa10.63□□□□□ -0.71
SMIM11A-204ENST00000474455 ROMO1P60602 79 aa10.38□□□□□ -0.75
SMIM11A-204ENST00000474455 KRTAP10-6P60371 365 aaPredicted RBP10.38□□□□□ -0.75
SMIM11A-204ENST00000474455 KRTAP3-3Q9BYR6 98 aa10.37□□□□□ -0.75
SMIM11A-204ENST00000474455 FAT4Q6V0I7 4981 aa10.36□□□□□ -0.75
SMIM11A-204ENST00000474455 KRTAP19-2Q3LHN2 52 aa10.34□□□□□ -0.75
SMIM11A-204ENST00000474455 S4R3F8 94 aa10.3□□□□□ -0.76
SMIM11A-204ENST00000474455 KRTAP3-2Q9BYR7 98 aa10.29□□□□□ -0.76
SMIM11A-204ENST00000474455 FLGP20930 4061 aaPredicted RBP10.23□□□□□ -0.77
SMIM11A-204ENST00000474455 KRTAP13-4Q3LI77 160 aa10.23□□□□□ -0.77
SMIM11A-204ENST00000474455 H3BS24 57 aa10.21□□□□□ -0.78
SMIM11A-204ENST00000474455 LCE2CQ5TA81 110 aa10.21□□□□□ -0.78
SMIM11A-204ENST00000474455 CRIPTQ9P021 101 aa10.16□□□□□ -0.78
SMIM11A-204ENST00000474455 A0A0D9SG42 100 aa10.15□□□□□ -0.79
SMIM11A-204ENST00000474455 P0C880 135 aa10.07□□□□□ -0.8
SMIM11A-204ENST00000474455 MT1HP80294 61 aa10□□□□□ -0.81
SMIM11A-204ENST00000474455 M0QZ58 72 aa9.94□□□□□ -0.82
SMIM11A-204ENST00000474455 KRTAP12-2P59991 146 aa9.93□□□□□ -0.82
SMIM11A-204ENST00000474455 KRTAP12-1P59990 96 aa9.91□□□□□ -0.82
SMIM11A-204ENST00000474455 SPINT4Q6UDR6 99 aa9.9□□□□□ -0.82
SMIM11A-204ENST00000474455 M0R2T5 61 aa9.85□□□□□ -0.83
SMIM11A-204ENST00000474455 C10orf95Q9H7T3 257 aa9.83□□□□□ -0.84
SMIM11A-204ENST00000474455 LCE2AQ5TA79 106 aaPredicted RBP9.8□□□□□ -0.84
SMIM11A-204ENST00000474455 KRTAP15-1Q3LI76 137 aa9.74□□□□□ -0.85
SMIM11A-204ENST00000474455 LORP23490 312 aaPredicted RBP9.62□□□□□ -0.87
SMIM11A-204ENST00000474455 KRTAP9-8Q9BYQ0 159 aa9.6□□□□□ -0.87
SMIM11A-204ENST00000474455 MT2AP02795 61 aa9.53□□□□□ -0.88
SMIM11A-204ENST00000474455 R4GN34 69 aa9.53□□□□□ -0.88
SMIM11A-204ENST00000474455 MT1FP04733 61 aa9.49□□□□□ -0.89
SMIM11A-204ENST00000474455 NDUFAF8A1L188 74 aa9.47□□□□□ -0.89
SMIM11A-204ENST00000474455 KRTAP10-10P60014 251 aa9.42□□□□□ -0.9
SMIM11A-204ENST00000474455 KRTAP9-3Q9BYQ3 159 aa9.25□□□□□ -0.93
SMIM11A-204ENST00000474455 PP632Q6XCG6 107 aa9.23□□□□□ -0.93
SMIM11A-204ENST00000474455 KRTAP19-1Q8IUB9 90 aa9.21□□□□□ -0.93
SMIM11A-204ENST00000474455 PLAC4Q8WY50 150 aa9.21□□□□□ -0.93
SMIM11A-204ENST00000474455 SPRR2GQ9BYE4 73 aa9.15□□□□□ -0.95
SMIM11A-204ENST00000474455 LCE2BO14633 110 aa9.09□□□□□ -0.95
SMIM11A-204ENST00000474455 CAMK2N1Q7Z7J9 78 aa9.07□□□□□ -0.96
SMIM11A-204ENST00000474455 USH2AO75445 5202 aa9.04□□□□□ -0.96
SMIM11A-204ENST00000474455 KRTAP19-8Q3LI54 63 aa8.94□□□□□ -0.98
SMIM11A-204ENST00000474455 KRTAP23-1A1A580 65 aa8.94□□□□□ -0.98
SMIM11A-204ENST00000474455 LCE2DQ5TA82 110 aaPredicted RBP8.94□□□□□ -0.98
SMIM11A-204ENST00000474455 MT1BP07438 61 aa8.91□□□□□ -0.98
SMIM11A-204ENST00000474455 FSIP2Q5CZC0 6907 aa8.9□□□□□ -0.98
SMIM11A-204ENST00000474455 LUZP6Q538Z0 58 aa8.88□□□□□ -0.99
SMIM11A-204ENST00000474455 TNP1P09430 55 aa8.83□□□□□ -1
SMIM11A-204ENST00000474455 SSPOA2VEC9 5147 aa8.83□□□□□ -1
SMIM11A-204ENST00000474455 KRTAP9-2Q9BYQ4 174 aa8.81□□□□□ -1
SMIM11A-204ENST00000474455 SPRR5A0A1B0GTR4 108 aa8.63□□□□□ -1.03
SMIM11A-204ENST00000474455 A0A0A0MQY5 61 aa8.61□□□□□ -1.03
SMIM11A-204ENST00000474455 MT1XP80297 61 aa8.56□□□□□ -1.04
SMIM11A-204ENST00000474455 KRTAP10-5P60370 271 aa8.54□□□□□ -1.04
SMIM11A-204ENST00000474455 KRTAP19-6Q3LI70 58 aa8.51□□□□□ -1.05
SMIM11A-204ENST00000474455 CRCT1Q9UGL9 99 aa8.44□□□□□ -1.06
SMIM11A-204ENST00000474455 FCGBPQ9Y6R7 5405 aaPredicted RBP8.44□□□□□ -1.06
SMIM11A-204ENST00000474455 PRO2289Q9P1D8 64 aa8.36□□□□□ -1.07
SMIM11A-204ENST00000474455 KMT2DO14686 5537 aa8.27□□□□□ -1.09
SMIM11A-204ENST00000474455 KRTAP10-7P60409 375 aaPredicted RBP8.25□□□□□ -1.09
SMIM11A-204ENST00000474455 LCE3AQ5TA76 89 aa8.23□□□□□ -1.09
SMIM11A-204ENST00000474455 KRTAP9-6A0A140TA67 174 aa8.19□□□□□ -1.1
SMIM11A-204ENST00000474455 KRTAP8-1Q8IUC2 63 aa8.15□□□□□ -1.11
SMIM11A-204ENST00000474455 KRTAP10-12P60413 245 aa8.08□□□□□ -1.12
SMIM11A-204ENST00000474455 MACF1Q9UPN3 7388 aaKnown RBP8.08□□□□□ -1.12
SMIM11A-204ENST00000474455 KRTAP4-8A0A0G2JLE6 195 aa8.04□□□□□ -1.12
SMIM11A-204ENST00000474455 KRTAP4-8Q9BYQ9 185 aa8.04□□□□□ -1.12
SMIM11A-204ENST00000474455 SYNE2Q8WXH0 6885 aaKnown RBP7.9□□□□□ -1.15
SMIM11A-204ENST00000474455 KRTAP12-3P60328 96 aa7.89□□□□□ -1.15
SMIM11A-204ENST00000474455 INE1O15225 51 aa7.84□□□□□ -1.15
SMIM11A-204ENST00000474455 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.83□□□□□ -1.16
SMIM11A-204ENST00000474455 KRTAP19-5Q3LI72 72 aa7.68□□□□□ -1.18
SMIM11A-204ENST00000474455 MUC12Q9UKN1 5478 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 156.7 ms