RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 H0Y9P7 68 aa5.83□□□□□ -1.48
USP39-210ENST00000459775 LINC00472Q9H8W2 130 aa5.81□□□□□ -1.48
USP39-210ENST00000459775 Q8N9L7 120 aa5.81□□□□□ -1.48
USP39-210ENST00000459775 DMAC1Q96GE9 116 aa5.81□□□□□ -1.48
USP39-210ENST00000459775 SPATA8Q6RVD6 105 aa5.8□□□□□ -1.48
USP39-210ENST00000459775 IGKV4-1P06312 121 aa5.78□□□□□ -1.48
USP39-210ENST00000459775 KRTAP3-3Q9BYR6 98 aa5.78□□□□□ -1.48
USP39-210ENST00000459775 KRTAP3-2Q9BYR7 98 aa5.78□□□□□ -1.48
USP39-210ENST00000459775 DSCR10P59022 87 aa5.77□□□□□ -1.49
USP39-210ENST00000459775 RPS29P62273 56 aaKnown RBP5.75□□□□□ -1.49
USP39-210ENST00000459775 K7EQZ3 153 aa5.75□□□□□ -1.49
USP39-210ENST00000459775 RNF213Q63HN8 5207 aa5.74□□□□□ -1.49
USP39-210ENST00000459775 COA5Q86WW8 74 aa5.74□□□□□ -1.49
USP39-210ENST00000459775 UQCR11O14957 56 aa5.73□□□□□ -1.49
USP39-210ENST00000459775 LPAP08519 4548 aa5.71□□□□□ -1.49
USP39-210ENST00000459775 IGLV7-46A0A075B6I9 117 aa5.71□□□□□ -1.5
USP39-210ENST00000459775 C9orf92A6NGG3 77 aa5.71□□□□□ -1.5
USP39-210ENST00000459775 Q5W150 140 aa5.71□□□□□ -1.5
USP39-210ENST00000459775 KRTAP9-2Q9BYQ4 174 aa5.7□□□□□ -1.5
USP39-210ENST00000459775 LRP2P98164 4655 aa5.69□□□□□ -1.5
USP39-210ENST00000459775 KRTAP15-1Q3LI76 137 aa5.66□□□□□ -1.5
USP39-210ENST00000459775 WFDC13Q8IUB5 93 aa5.66□□□□□ -1.5
USP39-210ENST00000459775 KRTAP9-6A0A140TA67 174 aa5.65□□□□□ -1.5
USP39-210ENST00000459775 MMP24-AS1A0A0U1RRL7 71 aa5.64□□□□□ -1.51
USP39-210ENST00000459775 KRTAP13-3Q3SY46 172 aa5.62□□□□□ -1.51
USP39-210ENST00000459775 A0A1B0GU33 70 aa5.57□□□□□ -1.52
USP39-210ENST00000459775 XP32Q5T750 250 aa5.56□□□□□ -1.52
USP39-210ENST00000459775 MRPL34Q9BQ48 92 aaKnown RBP5.56□□□□□ -1.52
USP39-210ENST00000459775 TPRXLQ17RH7 258 aa5.55□□□□□ -1.52
USP39-210ENST00000459775 SPINT4Q6UDR6 99 aa5.53□□□□□ -1.52
USP39-210ENST00000459775 LCE2AQ5TA79 106 aaPredicted RBP5.51□□□□□ -1.53
USP39-210ENST00000459775 A0A1B0GU69 56 aa5.47□□□□□ -1.53
USP39-210ENST00000459775 RPL37P61927 97 aaKnown RBP5.47□□□□□ -1.53
USP39-210ENST00000459775 FAT4Q6V0I7 4981 aa5.46□□□□□ -1.53
USP39-210ENST00000459775 PCOTHQ58A44 107 aa5.46□□□□□ -1.54
USP39-210ENST00000459775 MUC2Q02817 5179 aa5.43□□□□□ -1.54
USP39-210ENST00000459775 HRES1P13985 223 aa5.4□□□□□ -1.54
USP39-210ENST00000459775 KRTAP4-1Q9BYQ7 146 aa5.4□□□□□ -1.54
USP39-210ENST00000459775 TP53AIP1Q9HCN2 124 aa5.4□□□□□ -1.54
USP39-210ENST00000459775 IGKV2D-30A0A075B6S6 120 aa5.38□□□□□ -1.55
USP39-210ENST00000459775 IGKV2-30P06310 120 aa5.38□□□□□ -1.55
USP39-210ENST00000459775 MUC17Q685J3 4493 aa5.35□□□□□ -1.55
USP39-210ENST00000459775 CRCT1Q9UGL9 99 aa5.35□□□□□ -1.55
USP39-210ENST00000459775 PRO2289Q9P1D8 64 aa5.33□□□□□ -1.56
USP39-210ENST00000459775 ACYP2P14621 99 aa5.24□□□□□ -1.57
USP39-210ENST00000459775 R4GN34 69 aa5.21□□□□□ -1.57
USP39-210ENST00000459775 KRTAP3-1Q9BYR8 98 aa5.2□□□□□ -1.58
USP39-210ENST00000459775 KRTAP19-2Q3LHN2 52 aa5.18□□□□□ -1.58
USP39-210ENST00000459775 COX6B2Q6YFQ2 88 aa5.14□□□□□ -1.59
USP39-210ENST00000459775 LCE2CQ5TA81 110 aa5.13□□□□□ -1.59
USP39-210ENST00000459775 LCE2BO14633 110 aa5.09□□□□□ -1.59
USP39-210ENST00000459775 H1FX-AS1Q4G0G2 97 aa5.06□□□□□ -1.6
USP39-210ENST00000459775 KRTAP9-7A8MTY7 169 aa5.03□□□□□ -1.6
USP39-210ENST00000459775 CRIPTQ9P021 101 aa5.03□□□□□ -1.6
USP39-210ENST00000459775 FLGP20930 4061 aaPredicted RBP5.03□□□□□ -1.6
USP39-210ENST00000459775 FSIP2Q5CZC0 6907 aa5.03□□□□□ -1.6
USP39-210ENST00000459775 MT1HP80294 61 aa5.02□□□□□ -1.61
USP39-210ENST00000459775 S4R3F8 94 aa5□□□□□ -1.61
USP39-210ENST00000459775 LORP23490 312 aaPredicted RBP5□□□□□ -1.61
USP39-210ENST00000459775 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.99□□□□□ -1.61
USP39-210ENST00000459775 KRTAP10-6P60371 365 aaPredicted RBP4.99□□□□□ -1.61
USP39-210ENST00000459775 PLAC4Q8WY50 150 aa4.97□□□□□ -1.61
USP39-210ENST00000459775 INE1O15225 51 aa4.96□□□□□ -1.62
USP39-210ENST00000459775 H0YAA0 97 aa4.96□□□□□ -1.62
USP39-210ENST00000459775 M0R2T5 61 aa4.96□□□□□ -1.62
USP39-210ENST00000459775 KRTAP9-8Q9BYQ0 159 aa4.82□□□□□ -1.64
USP39-210ENST00000459775 MT2AP02795 61 aa4.79□□□□□ -1.64
USP39-210ENST00000459775 MT1FP04733 61 aa4.78□□□□□ -1.64
USP39-210ENST00000459775 KRTAP10-10P60014 251 aa4.74□□□□□ -1.65
USP39-210ENST00000459775 C10orf95Q9H7T3 257 aa4.74□□□□□ -1.65
USP39-210ENST00000459775 KRTAP12-2P59991 146 aa4.7□□□□□ -1.66
USP39-210ENST00000459775 KRTAP19-1Q8IUB9 90 aa4.68□□□□□ -1.66
USP39-210ENST00000459775 SSPOA2VEC9 5147 aa4.66□□□□□ -1.66
USP39-210ENST00000459775 KRTAP13-4Q3LI77 160 aa4.66□□□□□ -1.66
USP39-210ENST00000459775 USH2AO75445 5202 aa4.65□□□□□ -1.67
USP39-210ENST00000459775 KRTAP9-3Q9BYQ3 159 aa4.64□□□□□ -1.67
USP39-210ENST00000459775 FCGBPQ9Y6R7 5405 aaPredicted RBP4.63□□□□□ -1.67
USP39-210ENST00000459775 M0QZ58 72 aa4.61□□□□□ -1.67
USP39-210ENST00000459775 KRTAP6-3Q3LI67 103 aa4.59□□□□□ -1.67
USP39-210ENST00000459775 PP632Q6XCG6 107 aa4.57□□□□□ -1.68
USP39-210ENST00000459775 KRTAP19-6Q3LI70 58 aa4.56□□□□□ -1.68
USP39-210ENST00000459775 SPRR2GQ9BYE4 73 aa4.56□□□□□ -1.68
USP39-210ENST00000459775 A0A0D9SG42 100 aa4.55□□□□□ -1.68
USP39-210ENST00000459775 MACF1Q9UPN3 7388 aaKnown RBP4.54□□□□□ -1.68
USP39-210ENST00000459775 SYNE2Q8WXH0 6885 aaKnown RBP4.49□□□□□ -1.69
USP39-210ENST00000459775 MT1BP07438 61 aa4.48□□□□□ -1.69
USP39-210ENST00000459775 KRTAP19-8Q3LI54 63 aa4.46□□□□□ -1.7
USP39-210ENST00000459775 KRTAP12-1P59990 96 aa4.42□□□□□ -1.7
USP39-210ENST00000459775 KRTAP20-1Q3LI63 56 aa4.42□□□□□ -1.7
USP39-210ENST00000459775 SPRR5A0A1B0GTR4 108 aa4.39□□□□□ -1.71
USP39-210ENST00000459775 NEBP20929 6669 aa4.37□□□□□ -1.71
USP39-210ENST00000459775 MT1XP80297 61 aa4.3□□□□□ -1.72
USP39-210ENST00000459775 KRTAP10-5P60370 271 aa4.28□□□□□ -1.72
USP39-210ENST00000459775 KRTAP5-9P26371 169 aa4.22□□□□□ -1.73
USP39-210ENST00000459775 KRTAP2-3P0C7H8 128 aa4.21□□□□□ -1.74
USP39-210ENST00000459775 KRTAP2-4Q9BYR9 128 aa4.21□□□□□ -1.74
USP39-210ENST00000459775 MUC12Q9UKN1 5478 aa4.16□□□□□ -1.74
USP39-210ENST00000459775 KRTAP10-7P60409 375 aaPredicted RBP4.15□□□□□ -1.74
USP39-210ENST00000459775 KRTAP2-2Q9BYT5 123 aa4.13□□□□□ -1.75
USP39-210ENST00000459775 KMT2DO14686 5537 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms