RNA–Protein interactions for RNA: ENST00000455954.2

CHCHD4P3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 3, humanhuman

BASIC

Gene CHCHD4P3, Length 410 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD4P3-201ENST00000455954 FAT3Q8TDW7 4589 aa5.55□□□□□ -1.52
CHCHD4P3-201ENST00000455954 PKHD1L1Q86WI1 4243 aa5.54□□□□□ -1.52
CHCHD4P3-201ENST00000455954 C4orf48Q5BLP8 95 aa5.54□□□□□ -1.52
CHCHD4P3-201ENST00000455954 KRTAP1-4P0C5Y4 121 aa5.53□□□□□ -1.52
CHCHD4P3-201ENST00000455954 CSAG1Q6PB30 78 aa5.5□□□□□ -1.53
CHCHD4P3-201ENST00000455954 A8MUU9 505 aa5.48□□□□□ -1.53
CHCHD4P3-201ENST00000455954 TYMSOSQ8TAI1 123 aa5.47□□□□□ -1.53
CHCHD4P3-201ENST00000455954 HMCN2Q8NDA2 5059 aa5.44□□□□□ -1.54
CHCHD4P3-201ENST00000455954 H0YAA0 97 aa5.43□□□□□ -1.54
CHCHD4P3-201ENST00000455954 H1FX-AS1Q4G0G2 97 aa5.43□□□□□ -1.54
CHCHD4P3-201ENST00000455954 C20orf166-AS1Q96NR2 134 aa5.43□□□□□ -1.54
CHCHD4P3-201ENST00000455954 A0A1B0GU33 70 aa5.42□□□□□ -1.54
CHCHD4P3-201ENST00000455954 KRTAP25-1Q3LHN0 102 aa5.42□□□□□ -1.54
CHCHD4P3-201ENST00000455954 LINC00304Q8N9R0 145 aa5.42□□□□□ -1.54
CHCHD4P3-201ENST00000455954 TNXBP22105 4242 aa5.41□□□□□ -1.54
CHCHD4P3-201ENST00000455954 KRTAP3-3Q9BYR6 98 aa5.4□□□□□ -1.54
CHCHD4P3-201ENST00000455954 KRTAP3-2Q9BYR7 98 aa5.4□□□□□ -1.54
CHCHD4P3-201ENST00000455954 K7ERS5 55 aa5.39□□□□□ -1.55
CHCHD4P3-201ENST00000455954 KRTAP3-1Q9BYR8 98 aa5.33□□□□□ -1.56
CHCHD4P3-201ENST00000455954 COX6B2Q6YFQ2 88 aa5.32□□□□□ -1.56
CHCHD4P3-201ENST00000455954 H3BS24 57 aa5.31□□□□□ -1.56
CHCHD4P3-201ENST00000455954 UBR4Q5T4S7 5183 aa5.31□□□□□ -1.56
CHCHD4P3-201ENST00000455954 ROMO1P60602 79 aa5.29□□□□□ -1.56
CHCHD4P3-201ENST00000455954 LRP2P98164 4655 aa5.27□□□□□ -1.57
CHCHD4P3-201ENST00000455954 C9orf92A6NGG3 77 aa5.22□□□□□ -1.57
CHCHD4P3-201ENST00000455954 LPAP08519 4548 aa5.21□□□□□ -1.57
CHCHD4P3-201ENST00000455954 RPL37P61927 97 aaKnown RBP5.21□□□□□ -1.58
CHCHD4P3-201ENST00000455954 TPRXLQ17RH7 258 aa5.2□□□□□ -1.58
CHCHD4P3-201ENST00000455954 KRTAP10-6P60371 365 aaPredicted RBP5.15□□□□□ -1.59
CHCHD4P3-201ENST00000455954 RNF213Q63HN8 5207 aa5.15□□□□□ -1.59
CHCHD4P3-201ENST00000455954 S4R3F8 94 aa5.1□□□□□ -1.59
CHCHD4P3-201ENST00000455954 P0C880 135 aa5.06□□□□□ -1.6
CHCHD4P3-201ENST00000455954 KRTAP13-4Q3LI77 160 aa5.06□□□□□ -1.6
CHCHD4P3-201ENST00000455954 SEC61BP60468 96 aaKnown RBP5.05□□□□□ -1.6
CHCHD4P3-201ENST00000455954 XP32Q5T750 250 aa5.04□□□□□ -1.6
CHCHD4P3-201ENST00000455954 CRIPTQ9P021 101 aa5.03□□□□□ -1.6
CHCHD4P3-201ENST00000455954 SPINT4Q6UDR6 99 aa5.02□□□□□ -1.61
CHCHD4P3-201ENST00000455954 MUC2Q02817 5179 aa5.02□□□□□ -1.61
CHCHD4P3-201ENST00000455954 MUC17Q685J3 4493 aa5□□□□□ -1.61
CHCHD4P3-201ENST00000455954 A0A0D9SG42 100 aa4.99□□□□□ -1.61
CHCHD4P3-201ENST00000455954 M0QZ58 72 aa4.97□□□□□ -1.61
CHCHD4P3-201ENST00000455954 KRTAP15-1Q3LI76 137 aa4.97□□□□□ -1.61
CHCHD4P3-201ENST00000455954 LCE2AQ5TA79 106 aaPredicted RBP4.97□□□□□ -1.61
CHCHD4P3-201ENST00000455954 KRTAP4-1Q9BYQ7 146 aa4.97□□□□□ -1.61
CHCHD4P3-201ENST00000455954 KRTAP12-1P59990 96 aa4.95□□□□□ -1.62
CHCHD4P3-201ENST00000455954 KRTAP12-2P59991 146 aa4.93□□□□□ -1.62
CHCHD4P3-201ENST00000455954 C10orf95Q9H7T3 257 aa4.9□□□□□ -1.63
CHCHD4P3-201ENST00000455954 FAT4Q6V0I7 4981 aa4.89□□□□□ -1.63
CHCHD4P3-201ENST00000455954 LCE2CQ5TA81 110 aa4.85□□□□□ -1.63
CHCHD4P3-201ENST00000455954 KRTAP19-2Q3LHN2 52 aa4.84□□□□□ -1.63
CHCHD4P3-201ENST00000455954 NDUFAF8A1L188 74 aa4.82□□□□□ -1.64
CHCHD4P3-201ENST00000455954 KRTAP9-2Q9BYQ4 174 aa4.82□□□□□ -1.64
CHCHD4P3-201ENST00000455954 MT1HP80294 61 aa4.79□□□□□ -1.64
CHCHD4P3-201ENST00000455954 M0R2T5 61 aa4.71□□□□□ -1.66
CHCHD4P3-201ENST00000455954 PP632Q6XCG6 107 aa4.69□□□□□ -1.66
CHCHD4P3-201ENST00000455954 R4GN34 69 aa4.69□□□□□ -1.66
CHCHD4P3-201ENST00000455954 LORP23490 312 aaPredicted RBP4.68□□□□□ -1.66
CHCHD4P3-201ENST00000455954 KRTAP9-6A0A140TA67 174 aa4.65□□□□□ -1.67
CHCHD4P3-201ENST00000455954 PLAC4Q8WY50 150 aa4.65□□□□□ -1.67
CHCHD4P3-201ENST00000455954 LCE2BO14633 110 aa4.63□□□□□ -1.67
CHCHD4P3-201ENST00000455954 CRCT1Q9UGL9 99 aa4.57□□□□□ -1.68
CHCHD4P3-201ENST00000455954 KRTAP23-1A1A580 65 aa4.56□□□□□ -1.68
CHCHD4P3-201ENST00000455954 FLGP20930 4061 aaPredicted RBP4.54□□□□□ -1.68
CHCHD4P3-201ENST00000455954 LUZP6Q538Z0 58 aa4.53□□□□□ -1.68
CHCHD4P3-201ENST00000455954 KRTAP9-8Q9BYQ0 159 aa4.53□□□□□ -1.68
CHCHD4P3-201ENST00000455954 FSIP2Q5CZC0 6907 aa4.49□□□□□ -1.69
CHCHD4P3-201ENST00000455954 CAMK2N1Q7Z7J9 78 aa4.48□□□□□ -1.69
CHCHD4P3-201ENST00000455954 A0A0A0MQY5 61 aa4.47□□□□□ -1.69
CHCHD4P3-201ENST00000455954 MT2AP02795 61 aa4.47□□□□□ -1.69
CHCHD4P3-201ENST00000455954 MT1FP04733 61 aa4.43□□□□□ -1.7
CHCHD4P3-201ENST00000455954 KRTAP10-10P60014 251 aa4.43□□□□□ -1.7
CHCHD4P3-201ENST00000455954 SPRR5A0A1B0GTR4 108 aa4.41□□□□□ -1.7
CHCHD4P3-201ENST00000455954 TNP1P09430 55 aa4.4□□□□□ -1.71
CHCHD4P3-201ENST00000455954 KRTAP9-3Q9BYQ3 159 aa4.39□□□□□ -1.71
CHCHD4P3-201ENST00000455954 USH2AO75445 5202 aa4.29□□□□□ -1.72
CHCHD4P3-201ENST00000455954 KRTAP19-1Q8IUB9 90 aa4.28□□□□□ -1.72
CHCHD4P3-201ENST00000455954 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.25□□□□□ -1.73
CHCHD4P3-201ENST00000455954 SSPOA2VEC9 5147 aa4.25□□□□□ -1.73
CHCHD4P3-201ENST00000455954 KRTAP19-6Q3LI70 58 aa4.21□□□□□ -1.74
CHCHD4P3-201ENST00000455954 SPRR2GQ9BYE4 73 aa4.2□□□□□ -1.74
CHCHD4P3-201ENST00000455954 KRTAP9-7A8MTY7 169 aa4.18□□□□□ -1.74
CHCHD4P3-201ENST00000455954 FCGBPQ9Y6R7 5405 aaPredicted RBP4.14□□□□□ -1.75
CHCHD4P3-201ENST00000455954 INE1O15225 51 aa4.1□□□□□ -1.75
CHCHD4P3-201ENST00000455954 PRO2289Q9P1D8 64 aa4.1□□□□□ -1.75
CHCHD4P3-201ENST00000455954 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.75
CHCHD4P3-201ENST00000455954 MT1BP07438 61 aa4.08□□□□□ -1.76
CHCHD4P3-201ENST00000455954 KRTAP8-1Q8IUC2 63 aa4.08□□□□□ -1.76
CHCHD4P3-201ENST00000455954 LCE3AQ5TA76 89 aa4.06□□□□□ -1.76
CHCHD4P3-201ENST00000455954 MACF1Q9UPN3 7388 aaKnown RBP4.03□□□□□ -1.76
CHCHD4P3-201ENST00000455954 KRTAP10-5P60370 271 aa3.99□□□□□ -1.77
CHCHD4P3-201ENST00000455954 KRTAP6-3Q3LI67 103 aa3.99□□□□□ -1.77
CHCHD4P3-201ENST00000455954 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
CHCHD4P3-201ENST00000455954 KRTAP12-3P60328 96 aa3.9□□□□□ -1.79
CHCHD4P3-201ENST00000455954 KRTAP10-12P60413 245 aa3.89□□□□□ -1.79
CHCHD4P3-201ENST00000455954 MT1XP80297 61 aa3.87□□□□□ -1.79
CHCHD4P3-201ENST00000455954 LOC100996750A0A140TA64 210 aa3.83□□□□□ -1.8
CHCHD4P3-201ENST00000455954 KRTAP4-6Q9BYQ5 205 aa3.83□□□□□ -1.8
CHCHD4P3-201ENST00000455954 KRTAP5-9P26371 169 aa3.81□□□□□ -1.8
CHCHD4P3-201ENST00000455954 NEBP20929 6669 aa3.73□□□□□ -1.81
CHCHD4P3-201ENST00000455954 KRTAP19-4Q3LI73 84 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms