RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 RPL37P61927 97 aaKnown RBP6.78□□□□□ -1.32
COL28A1-204ENST00000444268 UQCR11O14957 56 aa6.77□□□□□ -1.33
COL28A1-204ENST00000444268 COX6B2Q6YFQ2 88 aa6.77□□□□□ -1.33
COL28A1-204ENST00000444268 XP32Q5T750 250 aa6.73□□□□□ -1.33
COL28A1-204ENST00000444268 KRTAP3-1Q9BYR8 98 aa6.73□□□□□ -1.33
COL28A1-204ENST00000444268 SPATA8Q6RVD6 105 aa6.72□□□□□ -1.33
COL28A1-204ENST00000444268 MIR22HGQ0VDD5 57 aa6.7□□□□□ -1.34
COL28A1-204ENST00000444268 HERC1Q15751 4861 aa6.68□□□□□ -1.34
COL28A1-204ENST00000444268 A6NN06 94 aa6.67□□□□□ -1.34
COL28A1-204ENST00000444268 LPAP08519 4548 aa6.66□□□□□ -1.34
COL28A1-204ENST00000444268 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
COL28A1-204ENST00000444268 KTN1-AS1Q86SY8 53 aa6.64□□□□□ -1.35
COL28A1-204ENST00000444268 A0A1B0GU33 70 aa6.57□□□□□ -1.36
COL28A1-204ENST00000444268 HMCN2Q8NDA2 5059 aa6.56□□□□□ -1.36
COL28A1-204ENST00000444268 LRP2P98164 4655 aa6.54□□□□□ -1.36
COL28A1-204ENST00000444268 H1FX-AS1Q4G0G2 97 aa6.54□□□□□ -1.36
COL28A1-204ENST00000444268 S4R3F8 94 aa6.54□□□□□ -1.36
COL28A1-204ENST00000444268 H0YAA0 97 aa6.49□□□□□ -1.37
COL28A1-204ENST00000444268 RBM12B-AS1Q9P1G2 102 aa6.49□□□□□ -1.37
COL28A1-204ENST00000444268 KRTAP3-3Q9BYR6 98 aa6.48□□□□□ -1.37
COL28A1-204ENST00000444268 SEC61BP60468 96 aaKnown RBP6.41□□□□□ -1.38
COL28A1-204ENST00000444268 K7ERS5 55 aa6.4□□□□□ -1.38
COL28A1-204ENST00000444268 KRTAP10-6P60371 365 aaPredicted RBP6.37□□□□□ -1.39
COL28A1-204ENST00000444268 KRTAP4-1Q9BYQ7 146 aa6.37□□□□□ -1.39
COL28A1-204ENST00000444268 MUC17Q685J3 4493 aa6.37□□□□□ -1.39
COL28A1-204ENST00000444268 CSAG1Q6PB30 78 aa6.36□□□□□ -1.39
COL28A1-204ENST00000444268 KRTAP3-2Q9BYR7 98 aa6.34□□□□□ -1.39
COL28A1-204ENST00000444268 UBR4Q5T4S7 5183 aa6.34□□□□□ -1.4
COL28A1-204ENST00000444268 MUC2Q02817 5179 aa6.27□□□□□ -1.41
COL28A1-204ENST00000444268 ADM2Q7Z4H4 148 aa6.27□□□□□ -1.41
COL28A1-204ENST00000444268 P0C880 135 aa6.26□□□□□ -1.41
COL28A1-204ENST00000444268 PRAC1Q96KF2 57 aa6.25□□□□□ -1.41
COL28A1-204ENST00000444268 KRTAP13-4Q3LI77 160 aa6.23□□□□□ -1.41
COL28A1-204ENST00000444268 RNF213Q63HN8 5207 aa6.22□□□□□ -1.41
COL28A1-204ENST00000444268 M0QZ58 72 aa6.21□□□□□ -1.41
COL28A1-204ENST00000444268 A0A0D9SG42 100 aa6.18□□□□□ -1.42
COL28A1-204ENST00000444268 ROMO1P60602 79 aa6.14□□□□□ -1.43
COL28A1-204ENST00000444268 KRTAP19-2Q3LHN2 52 aa6.14□□□□□ -1.43
COL28A1-204ENST00000444268 LINC01554Q52M75 96 aa6.1□□□□□ -1.43
COL28A1-204ENST00000444268 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
COL28A1-204ENST00000444268 LCE2CQ5TA81 110 aa6.06□□□□□ -1.44
COL28A1-204ENST00000444268 R4GN34 69 aa6.06□□□□□ -1.44
COL28A1-204ENST00000444268 KRTAP12-1P59990 96 aa6.05□□□□□ -1.44
COL28A1-204ENST00000444268 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
COL28A1-204ENST00000444268 SPINT4Q6UDR6 99 aa6.03□□□□□ -1.44
COL28A1-204ENST00000444268 FAT4Q6V0I7 4981 aa6.02□□□□□ -1.45
COL28A1-204ENST00000444268 FLGP20930 4061 aaPredicted RBP5.96□□□□□ -1.45
COL28A1-204ENST00000444268 MT1HP80294 61 aa5.94□□□□□ -1.46
COL28A1-204ENST00000444268 CRIPTQ9P021 101 aa5.9□□□□□ -1.46
COL28A1-204ENST00000444268 LORP23490 312 aaPredicted RBP5.85□□□□□ -1.47
COL28A1-204ENST00000444268 M0R2T5 61 aa5.85□□□□□ -1.47
COL28A1-204ENST00000444268 LCE2AQ5TA79 106 aaPredicted RBP5.81□□□□□ -1.48
COL28A1-204ENST00000444268 C10orf95Q9H7T3 257 aa5.75□□□□□ -1.49
COL28A1-204ENST00000444268 CAMK2N1Q7Z7J9 78 aa5.72□□□□□ -1.49
COL28A1-204ENST00000444268 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
COL28A1-204ENST00000444268 MT2AP02795 61 aa5.67□□□□□ -1.5
COL28A1-204ENST00000444268 MT1FP04733 61 aa5.65□□□□□ -1.51
COL28A1-204ENST00000444268 SPRR2GQ9BYE4 73 aa5.62□□□□□ -1.51
COL28A1-204ENST00000444268 PP632Q6XCG6 107 aa5.6□□□□□ -1.51
COL28A1-204ENST00000444268 KRTAP10-10P60014 251 aa5.6□□□□□ -1.51
COL28A1-204ENST00000444268 LCE2DQ5TA82 110 aaPredicted RBP5.56□□□□□ -1.52
COL28A1-204ENST00000444268 PLAC4Q8WY50 150 aa5.55□□□□□ -1.52
COL28A1-204ENST00000444268 H3BS24 57 aa5.54□□□□□ -1.52
COL28A1-204ENST00000444268 TNP1P09430 55 aa5.52□□□□□ -1.53
COL28A1-204ENST00000444268 KRTAP19-1Q8IUB9 90 aa5.52□□□□□ -1.53
COL28A1-204ENST00000444268 A0A0A0MQY5 61 aa5.5□□□□□ -1.53
COL28A1-204ENST00000444268 KRTAP23-1A1A580 65 aa5.49□□□□□ -1.53
COL28A1-204ENST00000444268 KRTAP9-3Q9BYQ3 159 aa5.49□□□□□ -1.53
COL28A1-204ENST00000444268 KRTAP15-1Q3LI76 137 aa5.45□□□□□ -1.54
COL28A1-204ENST00000444268 KRTAP19-8Q3LI54 63 aa5.4□□□□□ -1.54
COL28A1-204ENST00000444268 LCE2BO14633 110 aa5.39□□□□□ -1.55
COL28A1-204ENST00000444268 MT1BP07438 61 aa5.3□□□□□ -1.56
COL28A1-204ENST00000444268 USH2AO75445 5202 aa5.27□□□□□ -1.57
COL28A1-204ENST00000444268 KRTAP9-2Q9BYQ4 174 aa5.23□□□□□ -1.57
COL28A1-204ENST00000444268 NDUFAF8A1L188 74 aa5.21□□□□□ -1.58
COL28A1-204ENST00000444268 KRTAP10-5P60370 271 aa5.19□□□□□ -1.58
COL28A1-204ENST00000444268 PRO2289Q9P1D8 64 aa5.19□□□□□ -1.58
COL28A1-204ENST00000444268 MT1XP80297 61 aa5.18□□□□□ -1.58
COL28A1-204ENST00000444268 FSIP2Q5CZC0 6907 aa5.17□□□□□ -1.58
COL28A1-204ENST00000444268 LCE3AQ5TA76 89 aa5.15□□□□□ -1.58
COL28A1-204ENST00000444268 LUZP6Q538Z0 58 aa5.14□□□□□ -1.59
COL28A1-204ENST00000444268 SSPOA2VEC9 5147 aa5.13□□□□□ -1.59
COL28A1-204ENST00000444268 KRTAP8-1Q8IUC2 63 aa5.1□□□□□ -1.59
COL28A1-204ENST00000444268 KRTAP10-12P60413 245 aa5.09□□□□□ -1.6
COL28A1-204ENST00000444268 SPRR5A0A1B0GTR4 108 aa5.06□□□□□ -1.6
COL28A1-204ENST00000444268 KRTAP19-6Q3LI70 58 aa5.05□□□□□ -1.6
COL28A1-204ENST00000444268 CRCT1Q9UGL9 99 aa5□□□□□ -1.61
COL28A1-204ENST00000444268 KRTAP10-7P60409 375 aaPredicted RBP4.98□□□□□ -1.61
COL28A1-204ENST00000444268 KRTAP12-3P60328 96 aa4.96□□□□□ -1.61
COL28A1-204ENST00000444268 FCGBPQ9Y6R7 5405 aaPredicted RBP4.93□□□□□ -1.62
COL28A1-204ENST00000444268 KRTAP9-6A0A140TA67 174 aa4.86□□□□□ -1.63
COL28A1-204ENST00000444268 KMT2DO14686 5537 aa4.78□□□□□ -1.64
COL28A1-204ENST00000444268 KRTAP4-8A0A0G2JLE6 195 aa4.77□□□□□ -1.65
COL28A1-204ENST00000444268 KRTAP4-8Q9BYQ9 185 aa4.77□□□□□ -1.65
COL28A1-204ENST00000444268 KRTAP19-5Q3LI72 72 aa4.76□□□□□ -1.65
COL28A1-204ENST00000444268 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
COL28A1-204ENST00000444268 KRTAP4-6Q9BYQ5 205 aa4.7□□□□□ -1.66
COL28A1-204ENST00000444268 MACF1Q9UPN3 7388 aaKnown RBP4.69□□□□□ -1.66
COL28A1-204ENST00000444268 KRTAP19-4Q3LI73 84 aa4.69□□□□□ -1.66
COL28A1-204ENST00000444268 LCE3CQ5T5A8 94 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms