RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 UQCRQO14949 82 aa5.5□□□□□ -1.53
COL28A1-203ENST00000435823 MT1FP04733 61 aa5.5□□□□□ -1.53
COL28A1-203ENST00000435823 LOC101927531A0A1B0GV80 90 aa5.49□□□□□ -1.53
COL28A1-203ENST00000435823 C1orf64Q8NEQ6 169 aa5.49□□□□□ -1.53
COL28A1-203ENST00000435823 CYP4F30PQ9H0H9 118 aa5.48□□□□□ -1.53
COL28A1-203ENST00000435823 ATOX1O00244 68 aa5.47□□□□□ -1.53
COL28A1-203ENST00000435823 H0Y9P7 68 aa5.46□□□□□ -1.54
COL28A1-203ENST00000435823 S4R3F8 94 aa5.45□□□□□ -1.54
COL28A1-203ENST00000435823 KRTAP3-1Q9BYR8 98 aa5.44□□□□□ -1.54
COL28A1-203ENST00000435823 USH2AO75445 5202 aa5.43□□□□□ -1.54
COL28A1-203ENST00000435823 MP68P56378 58 aa5.41□□□□□ -1.54
COL28A1-203ENST00000435823 C5orf47Q569G3 176 aa5.4□□□□□ -1.54
COL28A1-203ENST00000435823 OCR1Q9BZK8 76 aa5.39□□□□□ -1.55
COL28A1-203ENST00000435823 K7ERU9 68 aa5.38□□□□□ -1.55
COL28A1-203ENST00000435823 CSAG1Q6PB30 78 aa5.38□□□□□ -1.55
COL28A1-203ENST00000435823 LCA10Q71F78 164 aa5.38□□□□□ -1.55
COL28A1-203ENST00000435823 LINC00208Q96KT6 92 aa5.38□□□□□ -1.55
COL28A1-203ENST00000435823 SCGB1A1P11684 91 aa5.37□□□□□ -1.55
COL28A1-203ENST00000435823 IMUPQ9GZP8 106 aa5.34□□□□□ -1.55
COL28A1-203ENST00000435823 FAM236AA0A1B0GUQ0 79 aa5.33□□□□□ -1.56
COL28A1-203ENST00000435823 FAM236BA0A1B0GV22 79 aa5.33□□□□□ -1.56
COL28A1-203ENST00000435823 H3BPC8 53 aa5.32□□□□□ -1.56
COL28A1-203ENST00000435823 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.32□□□□□ -1.56
COL28A1-203ENST00000435823 SSPOA2VEC9 5147 aa5.31□□□□□ -1.56
COL28A1-203ENST00000435823 A8MUN3 132 aa5.31□□□□□ -1.56
COL28A1-203ENST00000435823 KLKP1Q107X0 134 aa5.31□□□□□ -1.56
COL28A1-203ENST00000435823 MT-ATP8P03928 68 aa5.3□□□□□ -1.56
COL28A1-203ENST00000435823 NDUFC1O43677 76 aa5.27□□□□□ -1.57
COL28A1-203ENST00000435823 SMIM20Q8N5G0 67 aa5.26□□□□□ -1.57
COL28A1-203ENST00000435823 TRAV7A0A075B6U4 112 aa5.22□□□□□ -1.57
COL28A1-203ENST00000435823 FCGBPQ9Y6R7 5405 aaPredicted RBP5.19□□□□□ -1.58
COL28A1-203ENST00000435823 KRTAP19-6Q3LI70 58 aa5.18□□□□□ -1.58
COL28A1-203ENST00000435823 DMAC1Q96GE9 116 aa5.18□□□□□ -1.58
COL28A1-203ENST00000435823 H0YAA0 97 aa5.17□□□□□ -1.58
COL28A1-203ENST00000435823 CRIPTQ9P021 101 aa5.17□□□□□ -1.58
COL28A1-203ENST00000435823 SPRR2GQ9BYE4 73 aa5.16□□□□□ -1.58
COL28A1-203ENST00000435823 Q5VV11 94 aa5.13□□□□□ -1.59
COL28A1-203ENST00000435823 ADM2Q7Z4H4 148 aa5.12□□□□□ -1.59
COL28A1-203ENST00000435823 ACYP2P14621 99 aa5.1□□□□□ -1.59
COL28A1-203ENST00000435823 KRTAP19-8Q3LI54 63 aa5.1□□□□□ -1.59
COL28A1-203ENST00000435823 SNURFQ9Y675 71 aa5.1□□□□□ -1.59
COL28A1-203ENST00000435823 SERP2Q8N6R1 65 aa5.09□□□□□ -1.59
COL28A1-203ENST00000435823 MT1BP07438 61 aa5.08□□□□□ -1.6
COL28A1-203ENST00000435823 C20orf197Q8N268 126 aa5.07□□□□□ -1.6
COL28A1-203ENST00000435823 PCP4P48539 62 aa5.05□□□□□ -1.6
COL28A1-203ENST00000435823 SPTSSBQ8NFR3 76 aa5.05□□□□□ -1.6
COL28A1-203ENST00000435823 CHKB-CPT1BH3BT56 60 aa5.04□□□□□ -1.6
COL28A1-203ENST00000435823 A6NN06 94 aa5.02□□□□□ -1.61
COL28A1-203ENST00000435823 SPANXA2-OT1Q8N9U9 137 aa5.02□□□□□ -1.61
COL28A1-203ENST00000435823 SYNE2Q8WXH0 6885 aaKnown RBP5.01□□□□□ -1.61
COL28A1-203ENST00000435823 KRTAP10-7P60409 375 aaPredicted RBP5.01□□□□□ -1.61
COL28A1-203ENST00000435823 KRTAP5-11Q6L8G4 156 aa5.01□□□□□ -1.61
COL28A1-203ENST00000435823 P0C880 135 aa5□□□□□ -1.61
COL28A1-203ENST00000435823 R4GN34 69 aa5□□□□□ -1.61
COL28A1-203ENST00000435823 MACF1Q9UPN3 7388 aaKnown RBP5□□□□□ -1.61
COL28A1-203ENST00000435823 COX7CP15954 63 aa4.97□□□□□ -1.61
COL28A1-203ENST00000435823 M0QZ58 72 aa4.96□□□□□ -1.62
COL28A1-203ENST00000435823 KRTAP10-5P60370 271 aa4.95□□□□□ -1.62
COL28A1-203ENST00000435823 PLAC4Q8WY50 150 aa4.92□□□□□ -1.62
COL28A1-203ENST00000435823 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
COL28A1-203ENST00000435823 LINC01554Q52M75 96 aa4.88□□□□□ -1.63
COL28A1-203ENST00000435823 COA5Q86WW8 74 aa4.87□□□□□ -1.63
COL28A1-203ENST00000435823 ANAPC13Q9BS18 74 aa4.87□□□□□ -1.63
COL28A1-203ENST00000435823 PRO2289Q9P1D8 64 aa4.87□□□□□ -1.63
COL28A1-203ENST00000435823 H7BZZ5 65 aa4.85□□□□□ -1.63
COL28A1-203ENST00000435823 KRTAP6-3Q3LI67 103 aa4.84□□□□□ -1.63
COL28A1-203ENST00000435823 CYSTM1Q9H1C7 97 aa4.82□□□□□ -1.64
COL28A1-203ENST00000435823 SEC61GP60059 68 aa4.79□□□□□ -1.64
COL28A1-203ENST00000435823 MT1XP80297 61 aa4.79□□□□□ -1.64
COL28A1-203ENST00000435823 SERP1Q9Y6X1 66 aa4.77□□□□□ -1.65
COL28A1-203ENST00000435823 CCDC179H3BU77 68 aa4.74□□□□□ -1.65
COL28A1-203ENST00000435823 NEBP20929 6669 aa4.7□□□□□ -1.66
COL28A1-203ENST00000435823 KRTAP13-4Q3LI77 160 aa4.7□□□□□ -1.66
COL28A1-203ENST00000435823 ATP5EP56381 51 aaPredicted RBP4.69□□□□□ -1.66
COL28A1-203ENST00000435823 KRTAP12-2P59991 146 aa4.68□□□□□ -1.66
COL28A1-203ENST00000435823 A0A1B0GU33 70 aa4.66□□□□□ -1.66
COL28A1-203ENST00000435823 KRTAP5-9P26371 169 aa4.66□□□□□ -1.66
COL28A1-203ENST00000435823 A0A1B0GU69 56 aa4.64□□□□□ -1.67
COL28A1-203ENST00000435823 CAMK2N1Q7Z7J9 78 aa4.63□□□□□ -1.67
COL28A1-203ENST00000435823 MUC12Q9UKN1 5478 aa4.62□□□□□ -1.67
COL28A1-203ENST00000435823 SPATA8Q6RVD6 105 aa4.62□□□□□ -1.67
COL28A1-203ENST00000435823 KMT2DO14686 5537 aa4.62□□□□□ -1.67
COL28A1-203ENST00000435823 A0A0D9SG42 100 aa4.61□□□□□ -1.67
COL28A1-203ENST00000435823 KRTAP8-1Q8IUC2 63 aa4.61□□□□□ -1.67
COL28A1-203ENST00000435823 TMEM258P61165 79 aa4.6□□□□□ -1.67
COL28A1-203ENST00000435823 KRTAP20-1Q3LI63 56 aa4.57□□□□□ -1.68
COL28A1-203ENST00000435823 KRTAP5-1Q6L8H4 278 aa4.57□□□□□ -1.68
COL28A1-203ENST00000435823 SVIPQ8NHG7 77 aa4.57□□□□□ -1.68
COL28A1-203ENST00000435823 SPRR2FQ96RM1 72 aa4.57□□□□□ -1.68
COL28A1-203ENST00000435823 KRTAP10-12P60413 245 aa4.56□□□□□ -1.68
COL28A1-203ENST00000435823 LCE1EQ5T753 118 aa4.56□□□□□ -1.68
COL28A1-203ENST00000435823 SPINT4Q6UDR6 99 aa4.56□□□□□ -1.68
COL28A1-203ENST00000435823 PRR15LQ9BU68 103 aa4.56□□□□□ -1.68
COL28A1-203ENST00000435823 MDN1Q9NU22 5596 aa4.56□□□□□ -1.68
COL28A1-203ENST00000435823 SMIM26A0A096LP01 95 aa4.54□□□□□ -1.68
COL28A1-203ENST00000435823 LCE1AQ5T7P2 110 aa4.53□□□□□ -1.68
COL28A1-203ENST00000435823 LINC01558Q9Y6Z2 57 aa4.51□□□□□ -1.69
COL28A1-203ENST00000435823 KRTAP12-1P59990 96 aa4.5□□□□□ -1.69
COL28A1-203ENST00000435823 KRTAP5-4Q6L8H1 288 aa4.49□□□□□ -1.69
COL28A1-203ENST00000435823 SPRR2EP22531 72 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms