RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 KRTAP3-3Q9BYR6 98 aa8.66□□□□□ -1.02
SHH-202ENST00000430104 H3BPC8 53 aa8.65□□□□□ -1.02
SHH-202ENST00000430104 A8MUN3 132 aa8.6□□□□□ -1.03
SHH-202ENST00000430104 NDUFC1O43677 76 aa8.57□□□□□ -1.04
SHH-202ENST00000430104 TRAV7A0A075B6U4 112 aa8.55□□□□□ -1.04
SHH-202ENST00000430104 SMIM20Q8N5G0 67 aa8.55□□□□□ -1.04
SHH-202ENST00000430104 SSPOA2VEC9 5147 aa8.53□□□□□ -1.04
SHH-202ENST00000430104 KRTAP19-1Q8IUB9 90 aa8.52□□□□□ -1.05
SHH-202ENST00000430104 DMAC1Q96GE9 116 aa8.45□□□□□ -1.06
SHH-202ENST00000430104 SNURFQ9Y675 71 aa8.4□□□□□ -1.06
SHH-202ENST00000430104 H0YAA0 97 aa8.37□□□□□ -1.07
SHH-202ENST00000430104 KRTAP19-6Q3LI70 58 aa8.37□□□□□ -1.07
SHH-202ENST00000430104 ADM2Q7Z4H4 148 aa8.37□□□□□ -1.07
SHH-202ENST00000430104 SPRR2GQ9BYE4 73 aa8.37□□□□□ -1.07
SHH-202ENST00000430104 SERP2Q8N6R1 65 aa8.35□□□□□ -1.07
SHH-202ENST00000430104 C20orf197Q8N268 126 aa8.33□□□□□ -1.08
SHH-202ENST00000430104 ACYP2P14621 99 aa8.32□□□□□ -1.08
SHH-202ENST00000430104 Q5VV11 94 aa8.32□□□□□ -1.08
SHH-202ENST00000430104 CRIPTQ9P021 101 aa8.32□□□□□ -1.08
SHH-202ENST00000430104 FCGBPQ9Y6R7 5405 aaPredicted RBP8.31□□□□□ -1.08
SHH-202ENST00000430104 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.29□□□□□ -1.08
SHH-202ENST00000430104 MT1BP07438 61 aa8.29□□□□□ -1.08
SHH-202ENST00000430104 KRTAP19-8Q3LI54 63 aa8.29□□□□□ -1.08
SHH-202ENST00000430104 CHKB-CPT1BH3BT56 60 aa8.2□□□□□ -1.1
SHH-202ENST00000430104 P0C880 135 aa8.19□□□□□ -1.1
SHH-202ENST00000430104 SPANXA2-OT1Q8N9U9 137 aa8.18□□□□□ -1.1
SHH-202ENST00000430104 SPTSSBQ8NFR3 76 aa8.17□□□□□ -1.1
SHH-202ENST00000430104 COX7CP15954 63 aa8.16□□□□□ -1.1
SHH-202ENST00000430104 A6NN06 94 aa8.13□□□□□ -1.11
SHH-202ENST00000430104 KRTAP3-2Q9BYR7 98 aa8.13□□□□□ -1.11
SHH-202ENST00000430104 KRTAP9-7A8MTY7 169 aa8.12□□□□□ -1.11
SHH-202ENST00000430104 R4GN34 69 aa8.12□□□□□ -1.11
SHH-202ENST00000430104 M0QZ58 72 aa8.09□□□□□ -1.11
SHH-202ENST00000430104 KRTAP10-5P60370 271 aa8.04□□□□□ -1.12
SHH-202ENST00000430104 ANAPC13Q9BS18 74 aa8.01□□□□□ -1.13
SHH-202ENST00000430104 CYSTM1Q9H1C7 97 aa8.01□□□□□ -1.13
SHH-202ENST00000430104 MACF1Q9UPN3 7388 aaKnown RBP7.99□□□□□ -1.13
SHH-202ENST00000430104 LINC01554Q52M75 96 aa7.99□□□□□ -1.13
SHH-202ENST00000430104 COA5Q86WW8 74 aa7.99□□□□□ -1.13
SHH-202ENST00000430104 PLAC4Q8WY50 150 aa7.98□□□□□ -1.13
SHH-202ENST00000430104 H7BZZ5 65 aa7.97□□□□□ -1.13
SHH-202ENST00000430104 CCDC179H3BU77 68 aa7.86□□□□□ -1.15
SHH-202ENST00000430104 SYNE2Q8WXH0 6885 aaKnown RBP7.86□□□□□ -1.15
SHH-202ENST00000430104 PRO2289Q9P1D8 64 aa7.84□□□□□ -1.15
SHH-202ENST00000430104 MT1XP80297 61 aa7.82□□□□□ -1.16
SHH-202ENST00000430104 KRTAP6-3Q3LI67 103 aa7.81□□□□□ -1.16
SHH-202ENST00000430104 SEC61GP60059 68 aa7.78□□□□□ -1.16
SHH-202ENST00000430104 SERP1Q9Y6X1 66 aa7.76□□□□□ -1.17
SHH-202ENST00000430104 KRTAP13-4Q3LI77 160 aa7.74□□□□□ -1.17
SHH-202ENST00000430104 ATP5EP56381 51 aaPredicted RBP7.63□□□□□ -1.19
SHH-202ENST00000430104 A0A1B0GU33 70 aa7.61□□□□□ -1.19
SHH-202ENST00000430104 SPATA8Q6RVD6 105 aa7.6□□□□□ -1.19
SHH-202ENST00000430104 A0A1B0GU69 56 aa7.59□□□□□ -1.19
SHH-202ENST00000430104 A0A0D9SG42 100 aa7.58□□□□□ -1.2
SHH-202ENST00000430104 KRTAP12-2P59991 146 aa7.55□□□□□ -1.2
SHH-202ENST00000430104 CAMK2N1Q7Z7J9 78 aa7.53□□□□□ -1.2
SHH-202ENST00000430104 KRTAP5-9P26371 169 aa7.52□□□□□ -1.21
SHH-202ENST00000430104 TMEM258P61165 79 aa7.52□□□□□ -1.21
SHH-202ENST00000430104 KRTAP10-7P60409 375 aaPredicted RBP7.5□□□□□ -1.21
SHH-202ENST00000430104 SPINT4Q6UDR6 99 aa7.47□□□□□ -1.21
SHH-202ENST00000430104 KRTAP8-1Q8IUC2 63 aa7.47□□□□□ -1.21
SHH-202ENST00000430104 KMT2DO14686 5537 aa7.47□□□□□ -1.21
SHH-202ENST00000430104 KRTAP4-8A0A0G2JLE6 195 aa7.45□□□□□ -1.22
SHH-202ENST00000430104 KRTAP4-8Q9BYQ9 185 aa7.45□□□□□ -1.22
SHH-202ENST00000430104 SPRR2FQ96RM1 72 aa7.43□□□□□ -1.22
SHH-202ENST00000430104 PRR15LQ9BU68 103 aa7.42□□□□□ -1.22
SHH-202ENST00000430104 KRTAP10-12P60413 245 aa7.41□□□□□ -1.22
SHH-202ENST00000430104 MUC12Q9UKN1 5478 aa7.39□□□□□ -1.23
SHH-202ENST00000430104 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
SHH-202ENST00000430104 KRTAP12-1P59990 96 aa7.38□□□□□ -1.23
SHH-202ENST00000430104 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
SHH-202ENST00000430104 A8MU10 97 aa7.37□□□□□ -1.23
SHH-202ENST00000430104 NEBP20929 6669 aa7.34□□□□□ -1.23
SHH-202ENST00000430104 SPRR2EP22531 72 aa7.27□□□□□ -1.25
SHH-202ENST00000430104 SPRR2BP35325 72 aa7.27□□□□□ -1.25
SHH-202ENST00000430104 SPRR2AP35326 72 aa7.27□□□□□ -1.25
SHH-202ENST00000430104 MDN1Q9NU22 5596 aa7.2□□□□□ -1.26
SHH-202ENST00000430104 UQCR11O14957 56 aa7.17□□□□□ -1.26
SHH-202ENST00000430104 KRTAP20-1Q3LI63 56 aa7.16□□□□□ -1.26
SHH-202ENST00000430104 LCE1AQ5T7P2 110 aa7.16□□□□□ -1.26
SHH-202ENST00000430104 V9GYY9 64 aa7.08□□□□□ -1.28
SHH-202ENST00000430104 PSPHP1O15172 72 aa7.07□□□□□ -1.28
SHH-202ENST00000430104 PCP4P48539 62 aa7.05□□□□□ -1.28
SHH-202ENST00000430104 MIR22HGQ0VDD5 57 aa7.05□□□□□ -1.28
SHH-202ENST00000430104 C10orf95Q9H7T3 257 aa7.05□□□□□ -1.28
SHH-202ENST00000430104 Q1T7F1 81 aa7.04□□□□□ -1.28
SHH-202ENST00000430104 KRTAP2-3P0C7H8 128 aa7.02□□□□□ -1.29
SHH-202ENST00000430104 SPRR2DP22532 72 aa7.02□□□□□ -1.29
SHH-202ENST00000430104 KRTAP2-4Q9BYR9 128 aa7.02□□□□□ -1.29
SHH-202ENST00000430104 TNP1P09430 55 aa6.98□□□□□ -1.29
SHH-202ENST00000430104 KRTAP19-7Q3SYF9 63 aa6.98□□□□□ -1.29
SHH-202ENST00000430104 MT1EP04732 61 aa6.91□□□□□ -1.3
SHH-202ENST00000430104 KRTAP19-5Q3LI72 72 aa6.91□□□□□ -1.3
SHH-202ENST00000430104 K7ERS5 55 aa6.87□□□□□ -1.31
SHH-202ENST00000430104 LCE3AQ5TA76 89 aa6.87□□□□□ -1.31
SHH-202ENST00000430104 RPS28P62857 69 aaKnown RBP6.85□□□□□ -1.31
SHH-202ENST00000430104 A6NED7 52 aa6.83□□□□□ -1.32
SHH-202ENST00000430104 KRTAP19-3Q7Z4W3 81 aa6.81□□□□□ -1.32
SHH-202ENST00000430104 KRTAP2-2Q9BYT5 123 aa6.81□□□□□ -1.32
SHH-202ENST00000430104 KRTAP2-1Q9BYU5 128 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms