RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 A0A1B0GU69 56 aa5.88□□□□□ -1.47
CUX1-205ENST00000425244 ROMO1P60602 79 aa5.85□□□□□ -1.47
CUX1-205ENST00000425244 RPS29P62273 56 aaKnown RBP5.84□□□□□ -1.47
CUX1-205ENST00000425244 HERC2O95714 4834 aa5.84□□□□□ -1.47
CUX1-205ENST00000425244 KRTAP10-8P60410 259 aa5.83□□□□□ -1.48
CUX1-205ENST00000425244 MIR22HGQ0VDD5 57 aa5.8□□□□□ -1.48
CUX1-205ENST00000425244 MT1HL1P0DM35 61 aa5.78□□□□□ -1.48
CUX1-205ENST00000425244 A8MUU9 505 aa5.76□□□□□ -1.49
CUX1-205ENST00000425244 UQCR11O14957 56 aa5.76□□□□□ -1.49
CUX1-205ENST00000425244 C20orf166-AS1Q96NR2 134 aa5.75□□□□□ -1.49
CUX1-205ENST00000425244 PCLOQ9Y6V0 5065 aa5.74□□□□□ -1.49
CUX1-205ENST00000425244 KRTAP25-1Q3LHN0 102 aa5.72□□□□□ -1.49
CUX1-205ENST00000425244 J3QL48 77 aa5.72□□□□□ -1.49
CUX1-205ENST00000425244 P0C880 135 aa5.72□□□□□ -1.49
CUX1-205ENST00000425244 LPAP08519 4548 aa5.69□□□□□ -1.5
CUX1-205ENST00000425244 KRTAP3-1Q9BYR8 98 aa5.67□□□□□ -1.5
CUX1-205ENST00000425244 HERC1Q15751 4861 aa5.66□□□□□ -1.5
CUX1-205ENST00000425244 LRP2P98164 4655 aa5.61□□□□□ -1.51
CUX1-205ENST00000425244 COX6B2Q6YFQ2 88 aa5.59□□□□□ -1.52
CUX1-205ENST00000425244 A0A1B0GU33 70 aa5.56□□□□□ -1.52
CUX1-205ENST00000425244 H0YAA0 97 aa5.56□□□□□ -1.52
CUX1-205ENST00000425244 SEC61BP60468 96 aaKnown RBP5.55□□□□□ -1.52
CUX1-205ENST00000425244 XP32Q5T750 250 aa5.55□□□□□ -1.52
CUX1-205ENST00000425244 H1FX-AS1Q4G0G2 97 aa5.53□□□□□ -1.52
CUX1-205ENST00000425244 RPL37P61927 97 aaKnown RBP5.52□□□□□ -1.53
CUX1-205ENST00000425244 TPRXLQ17RH7 258 aa5.49□□□□□ -1.53
CUX1-205ENST00000425244 NDUFAF8A1L188 74 aa5.49□□□□□ -1.53
CUX1-205ENST00000425244 CRIPTQ9P021 101 aa5.45□□□□□ -1.54
CUX1-205ENST00000425244 MUC2Q02817 5179 aa5.45□□□□□ -1.54
CUX1-205ENST00000425244 HMCN2Q8NDA2 5059 aa5.44□□□□□ -1.54
CUX1-205ENST00000425244 LUZP6Q538Z0 58 aa5.43□□□□□ -1.54
CUX1-205ENST00000425244 KRTAP3-3Q9BYR6 98 aa5.43□□□□□ -1.54
CUX1-205ENST00000425244 SPINT4Q6UDR6 99 aa5.42□□□□□ -1.54
CUX1-205ENST00000425244 S4R3F8 94 aa5.42□□□□□ -1.54
CUX1-205ENST00000425244 K7ERS5 55 aa5.38□□□□□ -1.55
CUX1-205ENST00000425244 KRTAP15-1Q3LI76 137 aa5.38□□□□□ -1.55
CUX1-205ENST00000425244 KRTAP10-6P60371 365 aaPredicted RBP5.38□□□□□ -1.55
CUX1-205ENST00000425244 A0A0D9SG42 100 aa5.37□□□□□ -1.55
CUX1-205ENST00000425244 KRTAP13-4Q3LI77 160 aa5.34□□□□□ -1.55
CUX1-205ENST00000425244 UBR4Q5T4S7 5183 aa5.34□□□□□ -1.55
CUX1-205ENST00000425244 KRTAP3-2Q9BYR7 98 aa5.34□□□□□ -1.55
CUX1-205ENST00000425244 RNF213Q63HN8 5207 aa5.32□□□□□ -1.56
CUX1-205ENST00000425244 MUC17Q685J3 4493 aa5.3□□□□□ -1.56
CUX1-205ENST00000425244 KRTAP4-1Q9BYQ7 146 aa5.27□□□□□ -1.57
CUX1-205ENST00000425244 FAT4Q6V0I7 4981 aa5.19□□□□□ -1.58
CUX1-205ENST00000425244 KRTAP12-2P59991 146 aa5.17□□□□□ -1.58
CUX1-205ENST00000425244 C10orf95Q9H7T3 257 aa5.16□□□□□ -1.58
CUX1-205ENST00000425244 KRTAP12-1P59990 96 aa5.11□□□□□ -1.59
CUX1-205ENST00000425244 M0QZ58 72 aa5.1□□□□□ -1.59
CUX1-205ENST00000425244 R4GN34 69 aa5.05□□□□□ -1.6
CUX1-205ENST00000425244 KRTAP19-2Q3LHN2 52 aa5.04□□□□□ -1.6
CUX1-205ENST00000425244 CAMK2N1Q7Z7J9 78 aa5.01□□□□□ -1.61
CUX1-205ENST00000425244 FLGP20930 4061 aaPredicted RBP5.01□□□□□ -1.61
CUX1-205ENST00000425244 LORP23490 312 aaPredicted RBP4.99□□□□□ -1.61
CUX1-205ENST00000425244 LCE2CQ5TA81 110 aa4.96□□□□□ -1.62
CUX1-205ENST00000425244 M0R2T5 61 aa4.95□□□□□ -1.62
CUX1-205ENST00000425244 MT1HP80294 61 aa4.89□□□□□ -1.63
CUX1-205ENST00000425244 PLAC4Q8WY50 150 aa4.82□□□□□ -1.64
CUX1-205ENST00000425244 KRTAP10-10P60014 251 aa4.71□□□□□ -1.65
CUX1-205ENST00000425244 MT2AP02795 61 aa4.69□□□□□ -1.66
CUX1-205ENST00000425244 KRTAP9-8Q9BYQ0 159 aa4.69□□□□□ -1.66
CUX1-205ENST00000425244 MT1FP04733 61 aa4.68□□□□□ -1.66
CUX1-205ENST00000425244 PRO2289Q9P1D8 64 aa4.68□□□□□ -1.66
CUX1-205ENST00000425244 LCE2AQ5TA79 106 aaPredicted RBP4.66□□□□□ -1.66
CUX1-205ENST00000425244 PP632Q6XCG6 107 aa4.61□□□□□ -1.67
CUX1-205ENST00000425244 TNP1P09430 55 aa4.58□□□□□ -1.68
CUX1-205ENST00000425244 KRTAP19-1Q8IUB9 90 aa4.56□□□□□ -1.68
CUX1-205ENST00000425244 USH2AO75445 5202 aa4.56□□□□□ -1.68
CUX1-205ENST00000425244 FSIP2Q5CZC0 6907 aa4.55□□□□□ -1.68
CUX1-205ENST00000425244 SPRR2GQ9BYE4 73 aa4.53□□□□□ -1.68
CUX1-205ENST00000425244 KRTAP23-1A1A580 65 aa4.5□□□□□ -1.69
CUX1-205ENST00000425244 KRTAP9-3Q9BYQ3 159 aa4.5□□□□□ -1.69
CUX1-205ENST00000425244 LCE2DQ5TA82 110 aaPredicted RBP4.49□□□□□ -1.69
CUX1-205ENST00000425244 LCE2BO14633 110 aa4.42□□□□□ -1.7
CUX1-205ENST00000425244 SPRR5A0A1B0GTR4 108 aa4.41□□□□□ -1.7
CUX1-205ENST00000425244 INE1O15225 51 aa4.4□□□□□ -1.7
CUX1-205ENST00000425244 MT1BP07438 61 aa4.39□□□□□ -1.71
CUX1-205ENST00000425244 KRTAP19-8Q3LI54 63 aa4.38□□□□□ -1.71
CUX1-205ENST00000425244 LCE3AQ5TA76 89 aa4.36□□□□□ -1.71
CUX1-205ENST00000425244 SSPOA2VEC9 5147 aa4.29□□□□□ -1.72
CUX1-205ENST00000425244 KRTAP10-5P60370 271 aa4.27□□□□□ -1.73
CUX1-205ENST00000425244 MT1XP80297 61 aa4.27□□□□□ -1.73
CUX1-205ENST00000425244 KMT2DO14686 5537 aa4.23□□□□□ -1.73
CUX1-205ENST00000425244 KRTAP10-12P60413 245 aa4.2□□□□□ -1.74
CUX1-205ENST00000425244 KRTAP8-1Q8IUC2 63 aa4.19□□□□□ -1.74
CUX1-205ENST00000425244 KRTAP10-7P60409 375 aaPredicted RBP4.18□□□□□ -1.74
CUX1-205ENST00000425244 KRTAP9-2Q9BYQ4 174 aa4.15□□□□□ -1.74
CUX1-205ENST00000425244 KRTAP12-3P60328 96 aa4.14□□□□□ -1.75
CUX1-205ENST00000425244 FCGBPQ9Y6R7 5405 aaPredicted RBP4.1□□□□□ -1.75
CUX1-205ENST00000425244 KRTAP19-6Q3LI70 58 aa4.08□□□□□ -1.76
CUX1-205ENST00000425244 KRTAP4-8A0A0G2JLE6 195 aa4.02□□□□□ -1.77
CUX1-205ENST00000425244 KRTAP4-8Q9BYQ9 185 aa4.02□□□□□ -1.77
CUX1-205ENST00000425244 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
CUX1-205ENST00000425244 KRTAP19-5Q3LI72 72 aa4□□□□□ -1.77
CUX1-205ENST00000425244 CRCT1Q9UGL9 99 aa3.98□□□□□ -1.77
CUX1-205ENST00000425244 SYNE2Q8WXH0 6885 aaKnown RBP3.95□□□□□ -1.78
CUX1-205ENST00000425244 LCE3CQ5T5A8 94 aa3.88□□□□□ -1.79
CUX1-205ENST00000425244 MUC12Q9UKN1 5478 aa3.87□□□□□ -1.79
CUX1-205ENST00000425244 KRTAP9-6A0A140TA67 174 aa3.8□□□□□ -1.8
CUX1-205ENST00000425244 KRTAP19-7Q3SYF9 63 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms