RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 FAM236AA0A1B0GUQ0 79 aa8.71□□□□□ -1.02
PTCD3-204ENST00000418628 FAM236BA0A1B0GV22 79 aa8.71□□□□□ -1.02
PTCD3-204ENST00000418628 A8MUN3 132 aa8.68□□□□□ -1.02
PTCD3-204ENST00000418628 CSAG1Q6PB30 78 aa8.68□□□□□ -1.02
PTCD3-204ENST00000418628 SMIM20Q8N5G0 67 aa8.66□□□□□ -1.02
PTCD3-204ENST00000418628 TRAV7A0A075B6U4 112 aa8.64□□□□□ -1.03
PTCD3-204ENST00000418628 SSPOA2VEC9 5147 aa8.61□□□□□ -1.03
PTCD3-204ENST00000418628 DMAC1Q96GE9 116 aa8.56□□□□□ -1.04
PTCD3-204ENST00000418628 NDUFC1O43677 76 aa8.51□□□□□ -1.05
PTCD3-204ENST00000418628 KRTAP19-1Q8IUB9 90 aa8.51□□□□□ -1.05
PTCD3-204ENST00000418628 H0YAA0 97 aa8.48□□□□□ -1.05
PTCD3-204ENST00000418628 SERP2Q8N6R1 65 aa8.46□□□□□ -1.06
PTCD3-204ENST00000418628 SPRR2GQ9BYE4 73 aa8.44□□□□□ -1.06
PTCD3-204ENST00000418628 SNURFQ9Y675 71 aa8.41□□□□□ -1.06
PTCD3-204ENST00000418628 KRTAP19-6Q3LI70 58 aa8.39□□□□□ -1.07
PTCD3-204ENST00000418628 C20orf197Q8N268 126 aa8.37□□□□□ -1.07
PTCD3-204ENST00000418628 KRTAP19-8Q3LI54 63 aa8.36□□□□□ -1.07
PTCD3-204ENST00000418628 FCGBPQ9Y6R7 5405 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-204ENST00000418628 CRIPTQ9P021 101 aa8.35□□□□□ -1.07
PTCD3-204ENST00000418628 SPANXA2-OT1Q8N9U9 137 aa8.33□□□□□ -1.08
PTCD3-204ENST00000418628 MT1BP07438 61 aa8.32□□□□□ -1.08
PTCD3-204ENST00000418628 ACYP2P14621 99 aa8.32□□□□□ -1.08
PTCD3-204ENST00000418628 ADM2Q7Z4H4 148 aa8.3□□□□□ -1.08
PTCD3-204ENST00000418628 COX7CP15954 63 aa8.27□□□□□ -1.09
PTCD3-204ENST00000418628 Q5VV11 94 aa8.24□□□□□ -1.09
PTCD3-204ENST00000418628 P0C880 135 aa8.2□□□□□ -1.1
PTCD3-204ENST00000418628 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-204ENST00000418628 CYSTM1Q9H1C7 97 aa8.16□□□□□ -1.1
PTCD3-204ENST00000418628 SPTSSBQ8NFR3 76 aa8.14□□□□□ -1.11
PTCD3-204ENST00000418628 H7BZZ5 65 aa8.13□□□□□ -1.11
PTCD3-204ENST00000418628 CHKB-CPT1BH3BT56 60 aa8.11□□□□□ -1.11
PTCD3-204ENST00000418628 ANAPC13Q9BS18 74 aa8.08□□□□□ -1.12
PTCD3-204ENST00000418628 KRTAP10-5P60370 271 aa8.05□□□□□ -1.12
PTCD3-204ENST00000418628 R4GN34 69 aa8.05□□□□□ -1.12
PTCD3-204ENST00000418628 COA5Q86WW8 74 aa8.04□□□□□ -1.12
PTCD3-204ENST00000418628 MACF1Q9UPN3 7388 aaKnown RBP8.02□□□□□ -1.13
PTCD3-204ENST00000418628 A6NN06 94 aa8.01□□□□□ -1.13
PTCD3-204ENST00000418628 M0QZ58 72 aa8.01□□□□□ -1.13
PTCD3-204ENST00000418628 KRTAP9-7A8MTY7 169 aa7.98□□□□□ -1.13
PTCD3-204ENST00000418628 CCDC179H3BU77 68 aa7.95□□□□□ -1.14
PTCD3-204ENST00000418628 LOC100996750A0A140TA64 210 aa7.94□□□□□ -1.14
PTCD3-204ENST00000418628 KRTAP4-6Q9BYQ5 205 aa7.94□□□□□ -1.14
PTCD3-204ENST00000418628 MT1XP80297 61 aa7.86□□□□□ -1.15
PTCD3-204ENST00000418628 SYNE2Q8WXH0 6885 aaKnown RBP7.86□□□□□ -1.15
PTCD3-204ENST00000418628 PLAC4Q8WY50 150 aa7.85□□□□□ -1.15
PTCD3-204ENST00000418628 LINC01554Q52M75 96 aa7.82□□□□□ -1.16
PTCD3-204ENST00000418628 KRTAP13-4Q3LI77 160 aa7.81□□□□□ -1.16
PTCD3-204ENST00000418628 ATP5EP56381 51 aaPredicted RBP7.79□□□□□ -1.16
PTCD3-204ENST00000418628 PRO2289Q9P1D8 64 aa7.77□□□□□ -1.17
PTCD3-204ENST00000418628 KRTAP6-3Q3LI67 103 aa7.76□□□□□ -1.17
PTCD3-204ENST00000418628 SEC61GP60059 68 aa7.69□□□□□ -1.18
PTCD3-204ENST00000418628 TMEM258P61165 79 aa7.68□□□□□ -1.18
PTCD3-204ENST00000418628 SERP1Q9Y6X1 66 aa7.68□□□□□ -1.18
PTCD3-204ENST00000418628 KRTAP12-2P59991 146 aa7.64□□□□□ -1.19
PTCD3-204ENST00000418628 A0A1B0GU33 70 aa7.6□□□□□ -1.19
PTCD3-204ENST00000418628 KRTAP5-9P26371 169 aa7.58□□□□□ -1.2
PTCD3-204ENST00000418628 A0A1B0GU69 56 aa7.57□□□□□ -1.2
PTCD3-204ENST00000418628 SPATA8Q6RVD6 105 aa7.56□□□□□ -1.2
PTCD3-204ENST00000418628 KMT2DO14686 5537 aa7.54□□□□□ -1.2
PTCD3-204ENST00000418628 LINC01558Q9Y6Z2 57 aa7.49□□□□□ -1.21
PTCD3-204ENST00000418628 KRTAP10-7P60409 375 aaPredicted RBP7.48□□□□□ -1.21
PTCD3-204ENST00000418628 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
PTCD3-204ENST00000418628 A0A0D9SG42 100 aa7.47□□□□□ -1.21
PTCD3-204ENST00000418628 MUC12Q9UKN1 5478 aa7.45□□□□□ -1.22
PTCD3-204ENST00000418628 KRTAP12-1P59990 96 aa7.44□□□□□ -1.22
PTCD3-204ENST00000418628 PRR15LQ9BU68 103 aa7.41□□□□□ -1.22
PTCD3-204ENST00000418628 CAMK2N1Q7Z7J9 78 aa7.4□□□□□ -1.22
PTCD3-204ENST00000418628 KRTAP4-8A0A0G2JLE6 195 aa7.39□□□□□ -1.23
PTCD3-204ENST00000418628 KRTAP4-8Q9BYQ9 185 aa7.39□□□□□ -1.23
PTCD3-204ENST00000418628 NEBP20929 6669 aa7.39□□□□□ -1.23
PTCD3-204ENST00000418628 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
PTCD3-204ENST00000418628 KRTAP8-1Q8IUC2 63 aa7.37□□□□□ -1.23
PTCD3-204ENST00000418628 A8MU10 97 aa7.34□□□□□ -1.23
PTCD3-204ENST00000418628 SPINT4Q6UDR6 99 aa7.33□□□□□ -1.24
PTCD3-204ENST00000418628 SPRR2FQ96RM1 72 aa7.31□□□□□ -1.24
PTCD3-204ENST00000418628 MDN1Q9NU22 5596 aa7.26□□□□□ -1.25
PTCD3-204ENST00000418628 UQCR11O14957 56 aa7.2□□□□□ -1.26
PTCD3-204ENST00000418628 PCP4P48539 62 aa7.19□□□□□ -1.26
PTCD3-204ENST00000418628 Q1T7F1 81 aa7.19□□□□□ -1.26
PTCD3-204ENST00000418628 V9GYY9 64 aa7.17□□□□□ -1.26
PTCD3-204ENST00000418628 LCE1AQ5T7P2 110 aa7.15□□□□□ -1.26
PTCD3-204ENST00000418628 SPRR2EP22531 72 aa7.14□□□□□ -1.27
PTCD3-204ENST00000418628 SPRR2BP35325 72 aa7.14□□□□□ -1.27
PTCD3-204ENST00000418628 SPRR2AP35326 72 aa7.14□□□□□ -1.27
PTCD3-204ENST00000418628 C10orf95Q9H7T3 257 aa7.09□□□□□ -1.27
PTCD3-204ENST00000418628 PSPHP1O15172 72 aa7.07□□□□□ -1.28
PTCD3-204ENST00000418628 RPS28P62857 69 aaKnown RBP7.05□□□□□ -1.28
PTCD3-204ENST00000418628 MIR22HGQ0VDD5 57 aa7.05□□□□□ -1.28
PTCD3-204ENST00000418628 KRTAP19-7Q3SYF9 63 aa7.04□□□□□ -1.28
PTCD3-204ENST00000418628 KRTAP4-12Q9BQ66 201 aa7.01□□□□□ -1.29
PTCD3-204ENST00000418628 KRTAP20-1Q3LI63 56 aa7□□□□□ -1.29
PTCD3-204ENST00000418628 MT1EP04732 61 aa6.95□□□□□ -1.3
PTCD3-204ENST00000418628 TNP1P09430 55 aa6.94□□□□□ -1.3
PTCD3-204ENST00000418628 KRTAP2-3P0C7H8 128 aa6.9□□□□□ -1.3
PTCD3-204ENST00000418628 KRTAP2-4Q9BYR9 128 aa6.9□□□□□ -1.3
PTCD3-204ENST00000418628 SPRR2DP22532 72 aa6.89□□□□□ -1.31
PTCD3-204ENST00000418628 KRTAP19-5Q3LI72 72 aa6.87□□□□□ -1.31
PTCD3-204ENST00000418628 LCE3AQ5TA76 89 aa6.86□□□□□ -1.31
PTCD3-204ENST00000418628 A6NED7 52 aa6.83□□□□□ -1.32
PTCD3-204ENST00000418628 LCE3BQ5TA77 95 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms