RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 LINC00208Q96KT6 92 aa8.47□□□□□ -1.05
VCP-202ENST00000417448 SCGB1A1P11684 91 aa8.46□□□□□ -1.06
VCP-202ENST00000417448 ATOX1O00244 68 aa8.45□□□□□ -1.06
VCP-202ENST00000417448 KLKP1Q107X0 134 aa8.43□□□□□ -1.06
VCP-202ENST00000417448 C5orf47Q569G3 176 aa8.42□□□□□ -1.06
VCP-202ENST00000417448 MP68P56378 58 aa8.4□□□□□ -1.06
VCP-202ENST00000417448 S4R3F8 94 aa8.4□□□□□ -1.06
VCP-202ENST00000417448 IMUPQ9GZP8 106 aa8.39□□□□□ -1.07
VCP-202ENST00000417448 LCA10Q71F78 164 aa8.38□□□□□ -1.07
VCP-202ENST00000417448 FAM236AA0A1B0GUQ0 79 aa8.36□□□□□ -1.07
VCP-202ENST00000417448 FAM236BA0A1B0GV22 79 aa8.36□□□□□ -1.07
VCP-202ENST00000417448 MDN1Q9NU22 5596 aa8.32□□□□□ -1.08
VCP-202ENST00000417448 KRTAP5-9P26371 169 aa8.31□□□□□ -1.08
VCP-202ENST00000417448 KMT2DO14686 5537 aa8.3□□□□□ -1.08
VCP-202ENST00000417448 KRTAP3-3Q9BYR6 98 aa8.3□□□□□ -1.08
VCP-202ENST00000417448 CSAG1Q6PB30 78 aa8.27□□□□□ -1.09
VCP-202ENST00000417448 H3BPC8 53 aa8.26□□□□□ -1.09
VCP-202ENST00000417448 TRAV7A0A075B6U4 112 aa8.25□□□□□ -1.09
VCP-202ENST00000417448 A6NN06 94 aa8.25□□□□□ -1.09
VCP-202ENST00000417448 KRTAP2-3P0C7H8 128 aa8.23□□□□□ -1.09
VCP-202ENST00000417448 KRTAP2-4Q9BYR9 128 aa8.23□□□□□ -1.09
VCP-202ENST00000417448 SMIM20Q8N5G0 67 aa8.19□□□□□ -1.1
VCP-202ENST00000417448 A8MUN3 132 aa8.16□□□□□ -1.1
VCP-202ENST00000417448 SNURFQ9Y675 71 aa8.15□□□□□ -1.1
VCP-202ENST00000417448 MT1BP07438 61 aa8.14□□□□□ -1.11
VCP-202ENST00000417448 NDUFC1O43677 76 aa8.13□□□□□ -1.11
VCP-202ENST00000417448 DMAC1Q96GE9 116 aa8.09□□□□□ -1.11
VCP-202ENST00000417448 SERP2Q8N6R1 65 aa8.08□□□□□ -1.12
VCP-202ENST00000417448 KRTAP10-5P60370 271 aa8.06□□□□□ -1.12
VCP-202ENST00000417448 C20orf197Q8N268 126 aa8.06□□□□□ -1.12
VCP-202ENST00000417448 Q5VV11 94 aa7.99□□□□□ -1.13
VCP-202ENST00000417448 ADM2Q7Z4H4 148 aa7.98□□□□□ -1.13
VCP-202ENST00000417448 KRTAP19-8Q3LI54 63 aa7.96□□□□□ -1.14
VCP-202ENST00000417448 ACYP2P14621 99 aa7.95□□□□□ -1.14
VCP-202ENST00000417448 COX7CP15954 63 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 SPRR2EP22531 72 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 SPRR2BP35325 72 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 SPRR2AP35326 72 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 SPRR2GQ9BYE4 73 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 KRTAP2-2Q9BYT5 123 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 KRTAP2-1Q9BYU5 128 aa7.92□□□□□ -1.14
VCP-202ENST00000417448 H0YAA0 97 aa7.91□□□□□ -1.14
VCP-202ENST00000417448 P0C880 135 aa7.87□□□□□ -1.15
VCP-202ENST00000417448 SPRR2FQ96RM1 72 aa7.87□□□□□ -1.15
VCP-202ENST00000417448 CYSTM1Q9H1C7 97 aa7.86□□□□□ -1.15
VCP-202ENST00000417448 SPANXA2-OT1Q8N9U9 137 aa7.85□□□□□ -1.15
VCP-202ENST00000417448 CHKB-CPT1BH3BT56 60 aa7.83□□□□□ -1.16
VCP-202ENST00000417448 KRTAP3-2Q9BYR7 98 aa7.83□□□□□ -1.16
VCP-202ENST00000417448 CRIPTQ9P021 101 aa7.83□□□□□ -1.16
VCP-202ENST00000417448 ANAPC13Q9BS18 74 aa7.8□□□□□ -1.16
VCP-202ENST00000417448 LCE1AQ5T7P2 110 aa7.75□□□□□ -1.17
VCP-202ENST00000417448 H7BZZ5 65 aa7.74□□□□□ -1.17
VCP-202ENST00000417448 SPTSSBQ8NFR3 76 aa7.74□□□□□ -1.17
VCP-202ENST00000417448 CCDC179H3BU77 68 aa7.71□□□□□ -1.18
VCP-202ENST00000417448 COA5Q86WW8 74 aa7.71□□□□□ -1.18
VCP-202ENST00000417448 M0QZ58 72 aa7.69□□□□□ -1.18
VCP-202ENST00000417448 R4GN34 69 aa7.69□□□□□ -1.18
VCP-202ENST00000417448 SPRR2DP22532 72 aa7.67□□□□□ -1.18
VCP-202ENST00000417448 GPR98Q8WXG9 6306 aa7.65□□□□□ -1.19
VCP-202ENST00000417448 LINC01554Q52M75 96 aa7.62□□□□□ -1.19
VCP-202ENST00000417448 KRTAP8-1Q8IUC2 63 aa7.59□□□□□ -1.19
VCP-202ENST00000417448 LCE3BQ5TA77 95 aa7.53□□□□□ -1.2
VCP-202ENST00000417448 PLAC4Q8WY50 150 aa7.52□□□□□ -1.21
VCP-202ENST00000417448 KRTAP13-4Q3LI77 160 aa7.48□□□□□ -1.21
VCP-202ENST00000417448 MT1XP80297 61 aa7.44□□□□□ -1.22
VCP-202ENST00000417448 KRTAP4-8A0A0G2JLE6 195 aa7.39□□□□□ -1.23
VCP-202ENST00000417448 SEC61GP60059 68 aa7.39□□□□□ -1.23
VCP-202ENST00000417448 KRTAP4-8Q9BYQ9 185 aa7.39□□□□□ -1.23
VCP-202ENST00000417448 SERP1Q9Y6X1 66 aa7.39□□□□□ -1.23
VCP-202ENST00000417448 PRO2289Q9P1D8 64 aa7.38□□□□□ -1.23
VCP-202ENST00000417448 KRTAP12-2P59991 146 aa7.36□□□□□ -1.23
VCP-202ENST00000417448 ATP5EP56381 51 aaPredicted RBP7.34□□□□□ -1.23
VCP-202ENST00000417448 SPATA8Q6RVD6 105 aa7.33□□□□□ -1.24
VCP-202ENST00000417448 DSTQ03001 7570 aaKnown RBP7.31□□□□□ -1.24
VCP-202ENST00000417448 TMEM258P61165 79 aa7.3□□□□□ -1.24
VCP-202ENST00000417448 A0A0D9SG42 100 aa7.29□□□□□ -1.24
VCP-202ENST00000417448 A0A1B0GU33 70 aa7.29□□□□□ -1.24
VCP-202ENST00000417448 A0A1B0GU69 56 aa7.27□□□□□ -1.25
VCP-202ENST00000417448 KRTAP4-9Q9BYQ8 210 aa7.24□□□□□ -1.25
VCP-202ENST00000417448 KRTAP10-7P60409 375 aaPredicted RBP7.15□□□□□ -1.26
VCP-202ENST00000417448 SPINT4Q6UDR6 99 aa7.14□□□□□ -1.27
VCP-202ENST00000417448 LINC01558Q9Y6Z2 57 aa7.14□□□□□ -1.27
VCP-202ENST00000417448 A8MU10 97 aa7.13□□□□□ -1.27
VCP-202ENST00000417448 CAMK2N1Q7Z7J9 78 aa7.13□□□□□ -1.27
VCP-202ENST00000417448 KRTAP12-1P59990 96 aa7.09□□□□□ -1.27
VCP-202ENST00000417448 PRR15LQ9BU68 103 aa7.08□□□□□ -1.28
VCP-202ENST00000417448 KRTAP10-12P60413 245 aa7.04□□□□□ -1.28
VCP-202ENST00000417448 SMIM26A0A096LP01 95 aa7.03□□□□□ -1.28
VCP-202ENST00000417448 PCP4P48539 62 aa7□□□□□ -1.29
VCP-202ENST00000417448 LCE1DQ5T752 114 aa6.97□□□□□ -1.29
VCP-202ENST00000417448 PSPHP1O15172 72 aa6.89□□□□□ -1.31
VCP-202ENST00000417448 HMCN1Q96RW7 5635 aa6.88□□□□□ -1.31
VCP-202ENST00000417448 UQCR11O14957 56 aa6.88□□□□□ -1.31
VCP-202ENST00000417448 KRTAP5-10Q6L8G5 202 aa6.86□□□□□ -1.31
VCP-202ENST00000417448 LCE5AQ5TCM9 118 aa6.85□□□□□ -1.31
VCP-202ENST00000417448 Q1T7F1 81 aa6.84□□□□□ -1.31
VCP-202ENST00000417448 AHNAK2Q8IVF2 5795 aa6.83□□□□□ -1.32
VCP-202ENST00000417448 V9GYY9 64 aa6.81□□□□□ -1.32
VCP-202ENST00000417448 MT4P47944 62 aa6.79□□□□□ -1.32
VCP-202ENST00000417448 MIR22HGQ0VDD5 57 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms