RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 ACYP2P14621 99 aa4.76□□□□□ -1.65
RIF1-202ENST00000414861 ATP5EP56381 51 aaPredicted RBP4.76□□□□□ -1.65
RIF1-202ENST00000414861 LCA10Q71F78 164 aa4.74□□□□□ -1.65
RIF1-202ENST00000414861 S4R3F8 94 aa4.74□□□□□ -1.65
RIF1-202ENST00000414861 COA5Q86WW8 74 aa4.73□□□□□ -1.65
RIF1-202ENST00000414861 MT1HP80294 61 aa4.73□□□□□ -1.65
RIF1-202ENST00000414861 CHKB-CPT1BH3BT56 60 aa4.68□□□□□ -1.66
RIF1-202ENST00000414861 SERP1Q9Y6X1 66 aa4.66□□□□□ -1.66
RIF1-202ENST00000414861 M0R2T5 61 aa4.64□□□□□ -1.67
RIF1-202ENST00000414861 LCE2AQ5TA79 106 aaPredicted RBP4.64□□□□□ -1.67
RIF1-202ENST00000414861 CSAG1Q6PB30 78 aa4.63□□□□□ -1.67
RIF1-202ENST00000414861 SVIPQ8NHG7 77 aa4.62□□□□□ -1.67
RIF1-202ENST00000414861 SPTSSBQ8NFR3 76 aa4.58□□□□□ -1.68
RIF1-202ENST00000414861 KRTAP10-6P60371 365 aaPredicted RBP4.57□□□□□ -1.68
RIF1-202ENST00000414861 RPS28P62857 69 aaKnown RBP4.56□□□□□ -1.68
RIF1-202ENST00000414861 LORP23490 312 aaPredicted RBP4.55□□□□□ -1.68
RIF1-202ENST00000414861 KRTAP9-8Q9BYQ0 159 aa4.53□□□□□ -1.68
RIF1-202ENST00000414861 ADM2Q7Z4H4 148 aa4.51□□□□□ -1.69
RIF1-202ENST00000414861 H0YAA0 97 aa4.51□□□□□ -1.69
RIF1-202ENST00000414861 MT2AP02795 61 aa4.51□□□□□ -1.69
RIF1-202ENST00000414861 SMIM26A0A096LP01 95 aa4.5□□□□□ -1.69
RIF1-202ENST00000414861 P0C880 135 aa4.5□□□□□ -1.69
RIF1-202ENST00000414861 MT1FP04733 61 aa4.49□□□□□ -1.69
RIF1-202ENST00000414861 LINC01558Q9Y6Z2 57 aa4.48□□□□□ -1.69
RIF1-202ENST00000414861 Q1T7F1 81 aa4.46□□□□□ -1.7
RIF1-202ENST00000414861 A0A1B0GU69 56 aa4.45□□□□□ -1.7
RIF1-202ENST00000414861 KRTAP10-10P60014 251 aa4.44□□□□□ -1.7
RIF1-202ENST00000414861 SEC61GP60059 68 aa4.44□□□□□ -1.7
RIF1-202ENST00000414861 PRR15LQ9BU68 103 aa4.43□□□□□ -1.7
RIF1-202ENST00000414861 PSPHP1O15172 72 aa4.42□□□□□ -1.7
RIF1-202ENST00000414861 V9GYY9 64 aa4.42□□□□□ -1.7
RIF1-202ENST00000414861 Q5VV11 94 aa4.38□□□□□ -1.71
RIF1-202ENST00000414861 KRTAP13-4Q3LI77 160 aa4.37□□□□□ -1.71
RIF1-202ENST00000414861 KRTAP9-3Q9BYQ3 159 aa4.37□□□□□ -1.71
RIF1-202ENST00000414861 A0A1B0GU33 70 aa4.36□□□□□ -1.71
RIF1-202ENST00000414861 KRTAP19-1Q8IUB9 90 aa4.35□□□□□ -1.71
RIF1-202ENST00000414861 R4GN34 69 aa4.35□□□□□ -1.71
RIF1-202ENST00000414861 M0QZ58 72 aa4.35□□□□□ -1.71
RIF1-202ENST00000414861 SPATA8Q6RVD6 105 aa4.34□□□□□ -1.72
RIF1-202ENST00000414861 CRIPTQ9P021 101 aa4.34□□□□□ -1.72
RIF1-202ENST00000414861 SPRR2GQ9BYE4 73 aa4.33□□□□□ -1.72
RIF1-202ENST00000414861 LCE2BO14633 110 aa4.29□□□□□ -1.72
RIF1-202ENST00000414861 LINC01554Q52M75 96 aa4.29□□□□□ -1.72
RIF1-202ENST00000414861 UQCR11O14957 56 aa4.28□□□□□ -1.72
RIF1-202ENST00000414861 A6NED7 52 aa4.26□□□□□ -1.73
RIF1-202ENST00000414861 A8MU10 97 aa4.26□□□□□ -1.73
RIF1-202ENST00000414861 A0A0D9SG42 100 aa4.26□□□□□ -1.73
RIF1-202ENST00000414861 USH2AO75445 5202 aa4.25□□□□□ -1.73
RIF1-202ENST00000414861 KRTAP19-8Q3LI54 63 aa4.24□□□□□ -1.73
RIF1-202ENST00000414861 MIR22HGQ0VDD5 57 aa4.24□□□□□ -1.73
RIF1-202ENST00000414861 MT1BP07438 61 aa4.22□□□□□ -1.73
RIF1-202ENST00000414861 FSIP2Q5CZC0 6907 aa4.2□□□□□ -1.74
RIF1-202ENST00000414861 KRTAP12-1P59990 96 aa4.18□□□□□ -1.74
RIF1-202ENST00000414861 A6NN06 94 aa4.17□□□□□ -1.74
RIF1-202ENST00000414861 KRTAP9-2Q9BYQ4 174 aa4.17□□□□□ -1.74
RIF1-202ENST00000414861 KRTAP12-2P59991 146 aa4.17□□□□□ -1.74
RIF1-202ENST00000414861 CDC42SE1Q9NRR8 79 aa4.16□□□□□ -1.74
RIF1-202ENST00000414861 H3BS24 57 aa4.16□□□□□ -1.74
RIF1-202ENST00000414861 SPINT4Q6UDR6 99 aa4.15□□□□□ -1.74
RIF1-202ENST00000414861 SSPOA2VEC9 5147 aa4.15□□□□□ -1.75
RIF1-202ENST00000414861 BRK1Q8WUW1 75 aa4.12□□□□□ -1.75
RIF1-202ENST00000414861 PLAC4Q8WY50 150 aa4.12□□□□□ -1.75
RIF1-202ENST00000414861 MT1XP80297 61 aa4.05□□□□□ -1.76
RIF1-202ENST00000414861 CAMK2N1Q7Z7J9 78 aa4.05□□□□□ -1.76
RIF1-202ENST00000414861 KRTAP10-5P60370 271 aa4.03□□□□□ -1.76
RIF1-202ENST00000414861 K7ERS5 55 aa4.03□□□□□ -1.76
RIF1-202ENST00000414861 KRTAP19-6Q3LI70 58 aa4.03□□□□□ -1.76
RIF1-202ENST00000414861 CRCT1Q9UGL9 99 aa3.99□□□□□ -1.77
RIF1-202ENST00000414861 FCGBPQ9Y6R7 5405 aaPredicted RBP3.98□□□□□ -1.77
RIF1-202ENST00000414861 C10orf95Q9H7T3 257 aa3.96□□□□□ -1.77
RIF1-202ENST00000414861 PRO2289Q9P1D8 64 aa3.96□□□□□ -1.77
RIF1-202ENST00000414861 PRO0628Q9UI54 55 aa3.94□□□□□ -1.78
RIF1-202ENST00000414861 KRTAP10-7P60409 375 aaPredicted RBP3.89□□□□□ -1.79
RIF1-202ENST00000414861 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
RIF1-202ENST00000414861 PMAIP1Q13794 54 aa3.88□□□□□ -1.79
RIF1-202ENST00000414861 ROMO1P60602 79 aa3.87□□□□□ -1.79
RIF1-202ENST00000414861 KMT2DO14686 5537 aa3.85□□□□□ -1.79
RIF1-202ENST00000414861 TNP1P09430 55 aa3.83□□□□□ -1.8
RIF1-202ENST00000414861 KRTAP10-12P60413 245 aa3.82□□□□□ -1.8
RIF1-202ENST00000414861 MACF1Q9UPN3 7388 aaKnown RBP3.82□□□□□ -1.8
RIF1-202ENST00000414861 KRTAP25-1Q3LHN0 102 aa3.79□□□□□ -1.8
RIF1-202ENST00000414861 KRTAP4-8A0A0G2JLE6 195 aa3.78□□□□□ -1.8
RIF1-202ENST00000414861 KRTAP4-8Q9BYQ9 185 aa3.78□□□□□ -1.8
RIF1-202ENST00000414861 LOC100996750A0A140TA64 210 aa3.75□□□□□ -1.81
RIF1-202ENST00000414861 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
RIF1-202ENST00000414861 LCE3AQ5TA76 89 aa3.74□□□□□ -1.81
RIF1-202ENST00000414861 SYNE2Q8WXH0 6885 aaKnown RBP3.73□□□□□ -1.81
RIF1-202ENST00000414861 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.71□□□□□ -1.82
RIF1-202ENST00000414861 PRAC1Q96KF2 57 aa3.7□□□□□ -1.82
RIF1-202ENST00000414861 A0A0A0MQY5 61 aa3.69□□□□□ -1.82
RIF1-202ENST00000414861 KTN1-AS1Q86SY8 53 aa3.68□□□□□ -1.82
RIF1-202ENST00000414861 KRTAP8-1Q8IUC2 63 aa3.67□□□□□ -1.82
RIF1-202ENST00000414861 KRTAP23-1A1A580 65 aa3.64□□□□□ -1.83
RIF1-202ENST00000414861 KRTAP19-5Q3LI72 72 aa3.63□□□□□ -1.83
RIF1-202ENST00000414861 KRTAP19-7Q3SYF9 63 aa3.62□□□□□ -1.83
RIF1-202ENST00000414861 PP632Q6XCG6 107 aa3.62□□□□□ -1.83
RIF1-202ENST00000414861 MUC12Q9UKN1 5478 aa3.6□□□□□ -1.83
RIF1-202ENST00000414861 SPRR2FQ96RM1 72 aa3.58□□□□□ -1.84
RIF1-202ENST00000414861 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
RIF1-202ENST00000414861 KRTAP12-3P60328 96 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms