RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 FAM236DA0A1B0GTK5 79 aa5.83□□□□□ -1.48
LINC00539-201ENST00000411525 FAM236CP0DP71 79 aa5.83□□□□□ -1.48
LINC00539-201ENST00000411525 ATP5EP56381 51 aaPredicted RBP5.83□□□□□ -1.48
LINC00539-201ENST00000411525 LORP23490 312 aaPredicted RBP5.8□□□□□ -1.48
LINC00539-201ENST00000411525 RPS28P62857 69 aaKnown RBP5.8□□□□□ -1.48
LINC00539-201ENST00000411525 CRCT1Q9UGL9 99 aa5.8□□□□□ -1.48
LINC00539-201ENST00000411525 DMAC1Q96GE9 116 aa5.76□□□□□ -1.49
LINC00539-201ENST00000411525 COX6B2Q6YFQ2 88 aa5.74□□□□□ -1.49
LINC00539-201ENST00000411525 A8MUN3 132 aa5.73□□□□□ -1.49
LINC00539-201ENST00000411525 MPLKIPQ8TAP9 179 aa5.73□□□□□ -1.49
LINC00539-201ENST00000411525 MT1HP80294 61 aa5.72□□□□□ -1.49
LINC00539-201ENST00000411525 KRTAP19-2Q3LHN2 52 aa5.71□□□□□ -1.5
LINC00539-201ENST00000411525 RBM12B-AS1Q9P1G2 102 aa5.71□□□□□ -1.5
LINC00539-201ENST00000411525 ACYP2P14621 99 aa5.69□□□□□ -1.5
LINC00539-201ENST00000411525 KRTAP3-1Q9BYR8 98 aa5.69□□□□□ -1.5
LINC00539-201ENST00000411525 SERP1Q9Y6X1 66 aa5.68□□□□□ -1.5
LINC00539-201ENST00000411525 PMAIP1Q13794 54 aa5.67□□□□□ -1.5
LINC00539-201ENST00000411525 COA5Q86WW8 74 aa5.67□□□□□ -1.5
LINC00539-201ENST00000411525 M0R2T5 61 aa5.65□□□□□ -1.5
LINC00539-201ENST00000411525 KRTAP10-6P60371 365 aaPredicted RBP5.65□□□□□ -1.5
LINC00539-201ENST00000411525 H1FX-AS1Q4G0G2 97 aa5.63□□□□□ -1.51
LINC00539-201ENST00000411525 CHKB-CPT1BH3BT56 60 aa5.62□□□□□ -1.51
LINC00539-201ENST00000411525 S4R3F8 94 aa5.58□□□□□ -1.52
LINC00539-201ENST00000411525 FLGP20930 4061 aaPredicted RBP5.54□□□□□ -1.52
LINC00539-201ENST00000411525 LCA10Q71F78 164 aa5.54□□□□□ -1.52
LINC00539-201ENST00000411525 SPTSSBQ8NFR3 76 aa5.53□□□□□ -1.52
LINC00539-201ENST00000411525 SMIM26A0A096LP01 95 aa5.51□□□□□ -1.53
LINC00539-201ENST00000411525 CSAG1Q6PB30 78 aa5.44□□□□□ -1.54
LINC00539-201ENST00000411525 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
LINC00539-201ENST00000411525 Q1T7F1 81 aa5.42□□□□□ -1.54
LINC00539-201ENST00000411525 KRTAP4-6Q9BYQ5 205 aa5.42□□□□□ -1.54
LINC00539-201ENST00000411525 LINC01558Q9Y6Z2 57 aa5.41□□□□□ -1.54
LINC00539-201ENST00000411525 KRTAP9-7A8MTY7 169 aa5.4□□□□□ -1.54
LINC00539-201ENST00000411525 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.4□□□□□ -1.54
LINC00539-201ENST00000411525 KRTAP9-8Q9BYQ0 159 aa5.37□□□□□ -1.55
LINC00539-201ENST00000411525 A0A1B0GU69 56 aa5.36□□□□□ -1.55
LINC00539-201ENST00000411525 PRR15LQ9BU68 103 aa5.36□□□□□ -1.55
LINC00539-201ENST00000411525 H0YAA0 97 aa5.34□□□□□ -1.55
LINC00539-201ENST00000411525 BRK1Q8WUW1 75 aa5.34□□□□□ -1.55
LINC00539-201ENST00000411525 KTN1-AS1Q86SY8 53 aa5.33□□□□□ -1.56
LINC00539-201ENST00000411525 PSPHP1O15172 72 aa5.32□□□□□ -1.56
LINC00539-201ENST00000411525 ADM2Q7Z4H4 148 aa5.31□□□□□ -1.56
LINC00539-201ENST00000411525 USH2AO75445 5202 aa5.3□□□□□ -1.56
LINC00539-201ENST00000411525 SSPOA2VEC9 5147 aa5.29□□□□□ -1.56
LINC00539-201ENST00000411525 Q5VV11 94 aa5.28□□□□□ -1.56
LINC00539-201ENST00000411525 MT2AP02795 61 aa5.27□□□□□ -1.57
LINC00539-201ENST00000411525 P0C880 135 aa5.25□□□□□ -1.57
LINC00539-201ENST00000411525 KRTAP10-10P60014 251 aa5.24□□□□□ -1.57
LINC00539-201ENST00000411525 KRTAP19-1Q8IUB9 90 aa5.24□□□□□ -1.57
LINC00539-201ENST00000411525 FCGBPQ9Y6R7 5405 aaPredicted RBP5.23□□□□□ -1.57
LINC00539-201ENST00000411525 MT1FP04733 61 aa5.22□□□□□ -1.57
LINC00539-201ENST00000411525 A0A1B0GU33 70 aa5.21□□□□□ -1.58
LINC00539-201ENST00000411525 KRTAP9-3Q9BYQ3 159 aa5.21□□□□□ -1.58
LINC00539-201ENST00000411525 A6NED7 52 aa5.17□□□□□ -1.58
LINC00539-201ENST00000411525 UQCR11O14957 56 aa5.17□□□□□ -1.58
LINC00539-201ENST00000411525 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
LINC00539-201ENST00000411525 SYNE2Q8WXH0 6885 aaKnown RBP5.14□□□□□ -1.59
LINC00539-201ENST00000411525 M0QZ58 72 aa5.13□□□□□ -1.59
LINC00539-201ENST00000411525 CRIPTQ9P021 101 aa5.13□□□□□ -1.59
LINC00539-201ENST00000411525 MIR22HGQ0VDD5 57 aa5.12□□□□□ -1.59
LINC00539-201ENST00000411525 KRTAP13-4Q3LI77 160 aa5.12□□□□□ -1.59
LINC00539-201ENST00000411525 SPATA8Q6RVD6 105 aa5.12□□□□□ -1.59
LINC00539-201ENST00000411525 R4GN34 69 aa5.12□□□□□ -1.59
LINC00539-201ENST00000411525 KRTAP19-6Q3LI70 58 aa5.11□□□□□ -1.59
LINC00539-201ENST00000411525 LINC01554Q52M75 96 aa5.07□□□□□ -1.6
LINC00539-201ENST00000411525 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
LINC00539-201ENST00000411525 A8MU10 97 aa5.04□□□□□ -1.6
LINC00539-201ENST00000411525 SPRR2GQ9BYE4 73 aa5.03□□□□□ -1.6
LINC00539-201ENST00000411525 A0A0D9SG42 100 aa5.02□□□□□ -1.61
LINC00539-201ENST00000411525 KRTAP23-1A1A580 65 aa5.01□□□□□ -1.61
LINC00539-201ENST00000411525 KRTAP6-3Q3LI67 103 aa5□□□□□ -1.61
LINC00539-201ENST00000411525 KRTAP4-8Q9BYQ9 185 aa4.99□□□□□ -1.61
LINC00539-201ENST00000411525 A6NN06 94 aa4.94□□□□□ -1.62
LINC00539-201ENST00000411525 KRTAP12-1P59990 96 aa4.94□□□□□ -1.62
LINC00539-201ENST00000411525 KRTAP19-8Q3LI54 63 aa4.92□□□□□ -1.62
LINC00539-201ENST00000411525 PRAC1Q96KF2 57 aa4.92□□□□□ -1.62
LINC00539-201ENST00000411525 K7ERS5 55 aa4.91□□□□□ -1.62
LINC00539-201ENST00000411525 KRTAP12-2P59991 146 aa4.91□□□□□ -1.62
LINC00539-201ENST00000411525 SPINT4Q6UDR6 99 aa4.91□□□□□ -1.62
LINC00539-201ENST00000411525 MT1BP07438 61 aa4.85□□□□□ -1.63
LINC00539-201ENST00000411525 PLAC4Q8WY50 150 aa4.85□□□□□ -1.63
LINC00539-201ENST00000411525 KRTAP4-12Q9BQ66 201 aa4.82□□□□□ -1.64
LINC00539-201ENST00000411525 NEBP20929 6669 aa4.8□□□□□ -1.64
LINC00539-201ENST00000411525 CAMK2N1Q7Z7J9 78 aa4.8□□□□□ -1.64
LINC00539-201ENST00000411525 LUZP6Q538Z0 58 aa4.77□□□□□ -1.65
LINC00539-201ENST00000411525 MUC12Q9UKN1 5478 aa4.74□□□□□ -1.65
LINC00539-201ENST00000411525 KRTAP20-1Q3LI63 56 aa4.73□□□□□ -1.65
LINC00539-201ENST00000411525 KRTAP10-5P60370 271 aa4.7□□□□□ -1.66
LINC00539-201ENST00000411525 LCE3BQ5TA77 95 aa4.7□□□□□ -1.66
LINC00539-201ENST00000411525 KRTAP5-9P26371 169 aa4.68□□□□□ -1.66
LINC00539-201ENST00000411525 ROMO1P60602 79 aa4.68□□□□□ -1.66
LINC00539-201ENST00000411525 MT1XP80297 61 aa4.68□□□□□ -1.66
LINC00539-201ENST00000411525 KRTAP9-9Q9BYP9 154 aa4.67□□□□□ -1.66
LINC00539-201ENST00000411525 KRTAP9-4Q9BYQ2 154 aa4.67□□□□□ -1.66
LINC00539-201ENST00000411525 C10orf95Q9H7T3 257 aa4.66□□□□□ -1.66
LINC00539-201ENST00000411525 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
LINC00539-201ENST00000411525 KMT2DO14686 5537 aa4.59□□□□□ -1.67
LINC00539-201ENST00000411525 KRTAP4-8A0A0G2JLE6 195 aa4.57□□□□□ -1.68
LINC00539-201ENST00000411525 MDN1Q9NU22 5596 aa4.57□□□□□ -1.68
LINC00539-201ENST00000411525 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms