RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 APOBP04114 4563 aaKnown RBP5.89□□□□□ -1.47
SNX13-202ENST00000409604 RYR2Q92736 4967 aa5.88□□□□□ -1.47
SNX13-202ENST00000409604 DYNC2H1Q8NCM8 4307 aaKnown RBP5.88□□□□□ -1.47
SNX13-202ENST00000409604 LINC01558Q9Y6Z2 57 aa5.88□□□□□ -1.47
SNX13-202ENST00000409604 PRO0628Q9UI54 55 aa5.87□□□□□ -1.47
SNX13-202ENST00000409604 A8MU10 97 aa5.87□□□□□ -1.47
SNX13-202ENST00000409604 Q1T7F1 81 aa5.87□□□□□ -1.47
SNX13-202ENST00000409604 Q5VV11 94 aa5.86□□□□□ -1.47
SNX13-202ENST00000409604 KRTAP17-1Q9BYP8 105 aa5.86□□□□□ -1.47
SNX13-202ENST00000409604 HERC2O95714 4834 aa5.81□□□□□ -1.48
SNX13-202ENST00000409604 FRAS1Q86XX4 4008 aa5.79□□□□□ -1.48
SNX13-202ENST00000409604 EPPK1P58107 5090 aaKnown RBP5.79□□□□□ -1.48
SNX13-202ENST00000409604 CDC42SE1Q9NRR8 79 aa5.77□□□□□ -1.49
SNX13-202ENST00000409604 FAT2Q9NYQ8 4349 aa5.77□□□□□ -1.49
SNX13-202ENST00000409604 KRTAP10-10P60014 251 aa5.74□□□□□ -1.49
SNX13-202ENST00000409604 P0C880 135 aa5.71□□□□□ -1.5
SNX13-202ENST00000409604 PRAC1Q96KF2 57 aa5.69□□□□□ -1.5
SNX13-202ENST00000409604 PLAC4Q8WY50 150 aa5.68□□□□□ -1.5
SNX13-202ENST00000409604 KRTAP3-1Q9BYR8 98 aa5.66□□□□□ -1.5
SNX13-202ENST00000409604 HECTD4Q9Y4D8 3996 aa5.66□□□□□ -1.5
SNX13-202ENST00000409604 LRP2P98164 4655 aa5.64□□□□□ -1.51
SNX13-202ENST00000409604 PCLOQ9Y6V0 5065 aa5.62□□□□□ -1.51
SNX13-202ENST00000409604 BIRC6Q9NR09 4857 aa5.59□□□□□ -1.51
SNX13-202ENST00000409604 HSPG2P98160 4391 aa5.56□□□□□ -1.52
SNX13-202ENST00000409604 ABCA13Q86UQ4 5058 aa5.55□□□□□ -1.52
SNX13-202ENST00000409604 PKD1P98161 4303 aa5.5□□□□□ -1.53
SNX13-202ENST00000409604 H0YAA0 97 aa5.49□□□□□ -1.53
SNX13-202ENST00000409604 KRTAP4-1Q9BYQ7 146 aa5.49□□□□□ -1.53
SNX13-202ENST00000409604 KTN1-AS1Q86SY8 53 aa5.48□□□□□ -1.53
SNX13-202ENST00000409604 ROMO1P60602 79 aa5.46□□□□□ -1.54
SNX13-202ENST00000409604 HERC1Q15751 4861 aa5.45□□□□□ -1.54
SNX13-202ENST00000409604 LPAP08519 4548 aa5.44□□□□□ -1.54
SNX13-202ENST00000409604 RNF213Q63HN8 5207 aa5.39□□□□□ -1.55
SNX13-202ENST00000409604 C10orf95Q9H7T3 257 aa5.38□□□□□ -1.55
SNX13-202ENST00000409604 FSIP2Q5CZC0 6907 aa5.37□□□□□ -1.55
SNX13-202ENST00000409604 KRTAP3-3Q9BYR6 98 aa5.33□□□□□ -1.56
SNX13-202ENST00000409604 KRTAP13-4Q3LI77 160 aa5.33□□□□□ -1.56
SNX13-202ENST00000409604 UBR4Q5T4S7 5183 aa5.31□□□□□ -1.56
SNX13-202ENST00000409604 KRTAP12-2P59991 146 aa5.29□□□□□ -1.56
SNX13-202ENST00000409604 MUC2Q02817 5179 aa5.29□□□□□ -1.56
SNX13-202ENST00000409604 KRTAP10-6P60371 365 aaPredicted RBP5.29□□□□□ -1.56
SNX13-202ENST00000409604 TNP1P09430 55 aa5.28□□□□□ -1.56
SNX13-202ENST00000409604 LORP23490 312 aaPredicted RBP5.27□□□□□ -1.57
SNX13-202ENST00000409604 A6NN06 94 aa5.25□□□□□ -1.57
SNX13-202ENST00000409604 KRTAP3-2Q9BYR7 98 aa5.19□□□□□ -1.58
SNX13-202ENST00000409604 KRTAP12-1P59990 96 aa5.18□□□□□ -1.58
SNX13-202ENST00000409604 FAT4Q6V0I7 4981 aa5.14□□□□□ -1.59
SNX13-202ENST00000409604 MT1HP80294 61 aa5.14□□□□□ -1.59
SNX13-202ENST00000409604 PKHD1L1Q86WI1 4243 aa5.13□□□□□ -1.59
SNX13-202ENST00000409604 LUZP6Q538Z0 58 aa5.13□□□□□ -1.59
SNX13-202ENST00000409604 PRO2289Q9P1D8 64 aa5.13□□□□□ -1.59
SNX13-202ENST00000409604 KRTAP25-1Q3LHN0 102 aa5.12□□□□□ -1.59
SNX13-202ENST00000409604 TNXBP22105 4242 aa5.05□□□□□ -1.6
SNX13-202ENST00000409604 MT2AP02795 61 aa5□□□□□ -1.61
SNX13-202ENST00000409604 MT1FP04733 61 aa4.98□□□□□ -1.61
SNX13-202ENST00000409604 HMCN2Q8NDA2 5059 aa4.96□□□□□ -1.62
SNX13-202ENST00000409604 LCE2CQ5TA81 110 aa4.86□□□□□ -1.63
SNX13-202ENST00000409604 PP632Q6XCG6 107 aa4.82□□□□□ -1.64
SNX13-202ENST00000409604 NDUFAF8A1L188 74 aa4.79□□□□□ -1.64
SNX13-202ENST00000409604 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
SNX13-202ENST00000409604 KRTAP19-2Q3LHN2 52 aa4.74□□□□□ -1.65
SNX13-202ENST00000409604 KRTAP9-8Q9BYQ0 159 aa4.73□□□□□ -1.65
SNX13-202ENST00000409604 CRCT1Q9UGL9 99 aa4.73□□□□□ -1.65
SNX13-202ENST00000409604 MUC17Q685J3 4493 aa4.72□□□□□ -1.65
SNX13-202ENST00000409604 KRTAP19-1Q8IUB9 90 aa4.71□□□□□ -1.65
SNX13-202ENST00000409604 LCE3AQ5TA76 89 aa4.69□□□□□ -1.66
SNX13-202ENST00000409604 SPRR2GQ9BYE4 73 aa4.69□□□□□ -1.66
SNX13-202ENST00000409604 USH2AO75445 5202 aa4.66□□□□□ -1.66
SNX13-202ENST00000409604 KRTAP15-1Q3LI76 137 aa4.66□□□□□ -1.66
SNX13-202ENST00000409604 FLGP20930 4061 aaPredicted RBP4.62□□□□□ -1.67
SNX13-202ENST00000409604 KRTAP8-1Q8IUC2 63 aa4.61□□□□□ -1.67
SNX13-202ENST00000409604 KRTAP12-3P60328 96 aa4.58□□□□□ -1.68
SNX13-202ENST00000409604 KRTAP9-3Q9BYQ3 159 aa4.55□□□□□ -1.68
SNX13-202ENST00000409604 LCE2BO14633 110 aa4.54□□□□□ -1.68
SNX13-202ENST00000409604 MT1BP07438 61 aa4.53□□□□□ -1.68
SNX13-202ENST00000409604 H3BS24 57 aa4.52□□□□□ -1.69
SNX13-202ENST00000409604 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
SNX13-202ENST00000409604 KRTAP10-7P60409 375 aaPredicted RBP4.51□□□□□ -1.69
SNX13-202ENST00000409604 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
SNX13-202ENST00000409604 SPRR2FQ96RM1 72 aa4.49□□□□□ -1.69
SNX13-202ENST00000409604 KRTAP4-8A0A0G2JLE6 195 aa4.49□□□□□ -1.69
SNX13-202ENST00000409604 KRTAP4-8Q9BYQ9 185 aa4.49□□□□□ -1.69
SNX13-202ENST00000409604 LCE2AQ5TA79 106 aaPredicted RBP4.46□□□□□ -1.7
SNX13-202ENST00000409604 KRTAP19-8Q3LI54 63 aa4.44□□□□□ -1.7
SNX13-202ENST00000409604 MT1XP80297 61 aa4.44□□□□□ -1.7
SNX13-202ENST00000409604 KRTAP9-2Q9BYQ4 174 aa4.41□□□□□ -1.7
SNX13-202ENST00000409604 KRTAP10-5P60370 271 aa4.4□□□□□ -1.7
SNX13-202ENST00000409604 KRTAP19-5Q3LI72 72 aa4.39□□□□□ -1.71
SNX13-202ENST00000409604 DSTQ03001 7570 aaKnown RBP4.38□□□□□ -1.71
SNX13-202ENST00000409604 SYNE1Q8NF91 8797 aaKnown RBP4.35□□□□□ -1.71
SNX13-202ENST00000409604 KMT2DO14686 5537 aa4.32□□□□□ -1.72
SNX13-202ENST00000409604 SYNE2Q8WXH0 6885 aaKnown RBP4.26□□□□□ -1.73
SNX13-202ENST00000409604 FCGBPQ9Y6R7 5405 aaPredicted RBP4.21□□□□□ -1.73
SNX13-202ENST00000409604 SPRR2EP22531 72 aa4.17□□□□□ -1.74
SNX13-202ENST00000409604 SPRR2BP35325 72 aa4.17□□□□□ -1.74
SNX13-202ENST00000409604 SPRR2AP35326 72 aa4.17□□□□□ -1.74
SNX13-202ENST00000409604 SSPOA2VEC9 5147 aa4.15□□□□□ -1.75
SNX13-202ENST00000409604 KRTAP4-7Q9BYR0 210 aa4.14□□□□□ -1.75
SNX13-202ENST00000409604 MACF1Q9UPN3 7388 aaKnown RBP4.13□□□□□ -1.75
SNX13-202ENST00000409604 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms