RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 PRO0628Q9UI54 55 aa9.62□□□□□ -0.87
USP39-202ENST00000409025 RBM12B-AS1Q9P1G2 102 aa9.59□□□□□ -0.87
USP39-202ENST00000409025 SEC61GP60059 68 aa9.58□□□□□ -0.88
USP39-202ENST00000409025 H1FX-AS1Q4G0G2 97 aa9.56□□□□□ -0.88
USP39-202ENST00000409025 S4R3F8 94 aa9.56□□□□□ -0.88
USP39-202ENST00000409025 LCA10Q71F78 164 aa9.54□□□□□ -0.88
USP39-202ENST00000409025 HERC1Q15751 4861 aa9.52□□□□□ -0.89
USP39-202ENST00000409025 KRTAP3-3Q9BYR6 98 aa9.5□□□□□ -0.89
USP39-202ENST00000409025 CDC42SE1Q9NRR8 79 aa9.49□□□□□ -0.89
USP39-202ENST00000409025 A8MU10 97 aa9.46□□□□□ -0.89
USP39-202ENST00000409025 UQCR11O14957 56 aa9.44□□□□□ -0.9
USP39-202ENST00000409025 KRTAP4-1Q9BYQ7 146 aa9.43□□□□□ -0.9
USP39-202ENST00000409025 MUC17Q685J3 4493 aa9.37□□□□□ -0.91
USP39-202ENST00000409025 MIR22HGQ0VDD5 57 aa9.37□□□□□ -0.91
USP39-202ENST00000409025 SPATA8Q6RVD6 105 aa9.36□□□□□ -0.91
USP39-202ENST00000409025 SVIPQ8NHG7 77 aa9.36□□□□□ -0.91
USP39-202ENST00000409025 HMCN2Q8NDA2 5059 aa9.33□□□□□ -0.92
USP39-202ENST00000409025 A0A1B0GU33 70 aa9.33□□□□□ -0.92
USP39-202ENST00000409025 CSAG1Q6PB30 78 aa9.31□□□□□ -0.92
USP39-202ENST00000409025 KRTAP10-6P60371 365 aaPredicted RBP9.24□□□□□ -0.93
USP39-202ENST00000409025 KRTAP3-2Q9BYR7 98 aa9.23□□□□□ -0.93
USP39-202ENST00000409025 H0YAA0 97 aa9.2□□□□□ -0.94
USP39-202ENST00000409025 PMAIP1Q13794 54 aa9.2□□□□□ -0.94
USP39-202ENST00000409025 KRTAP19-2Q3LHN2 52 aa9.19□□□□□ -0.94
USP39-202ENST00000409025 ADM2Q7Z4H4 148 aa9.17□□□□□ -0.94
USP39-202ENST00000409025 P0C880 135 aa9.14□□□□□ -0.95
USP39-202ENST00000409025 A6NN06 94 aa9.09□□□□□ -0.95
USP39-202ENST00000409025 UBR4Q5T4S7 5183 aa9.04□□□□□ -0.96
USP39-202ENST00000409025 KRTAP13-4Q3LI77 160 aa9.03□□□□□ -0.96
USP39-202ENST00000409025 MUC2Q02817 5179 aa8.97□□□□□ -0.97
USP39-202ENST00000409025 M0QZ58 72 aa8.93□□□□□ -0.98
USP39-202ENST00000409025 A0A0D9SG42 100 aa8.92□□□□□ -0.98
USP39-202ENST00000409025 K7ERS5 55 aa8.91□□□□□ -0.98
USP39-202ENST00000409025 FLGP20930 4061 aaPredicted RBP8.9□□□□□ -0.98
USP39-202ENST00000409025 LCE2CQ5TA81 110 aa8.88□□□□□ -0.99
USP39-202ENST00000409025 KTN1-AS1Q86SY8 53 aa8.88□□□□□ -0.99
USP39-202ENST00000409025 RNF213Q63HN8 5207 aa8.87□□□□□ -0.99
USP39-202ENST00000409025 R4GN34 69 aa8.82□□□□□ -1
USP39-202ENST00000409025 LORP23490 312 aaPredicted RBP8.76□□□□□ -1.01
USP39-202ENST00000409025 KRTAP12-1P59990 96 aa8.7□□□□□ -1.02
USP39-202ENST00000409025 MT1HP80294 61 aa8.7□□□□□ -1.02
USP39-202ENST00000409025 M0R2T5 61 aa8.7□□□□□ -1.02
USP39-202ENST00000409025 KRTAP12-2P59991 146 aa8.7□□□□□ -1.02
USP39-202ENST00000409025 LINC01554Q52M75 96 aa8.7□□□□□ -1.02
USP39-202ENST00000409025 SPINT4Q6UDR6 99 aa8.7□□□□□ -1.02
USP39-202ENST00000409025 CRIPTQ9P021 101 aa8.64□□□□□ -1.03
USP39-202ENST00000409025 FAT4Q6V0I7 4981 aa8.59□□□□□ -1.04
USP39-202ENST00000409025 PRAC1Q96KF2 57 aa8.58□□□□□ -1.04
USP39-202ENST00000409025 ROMO1P60602 79 aa8.57□□□□□ -1.04
USP39-202ENST00000409025 MT2AP02795 61 aa8.42□□□□□ -1.06
USP39-202ENST00000409025 KRTAP9-8Q9BYQ0 159 aa8.41□□□□□ -1.06
USP39-202ENST00000409025 KRTAP10-10P60014 251 aa8.39□□□□□ -1.07
USP39-202ENST00000409025 MT1FP04733 61 aa8.38□□□□□ -1.07
USP39-202ENST00000409025 SPRR2GQ9BYE4 73 aa8.38□□□□□ -1.07
USP39-202ENST00000409025 KRTAP19-1Q8IUB9 90 aa8.33□□□□□ -1.08
USP39-202ENST00000409025 KRTAP25-1Q3LHN0 102 aa8.32□□□□□ -1.08
USP39-202ENST00000409025 CAMK2N1Q7Z7J9 78 aa8.31□□□□□ -1.08
USP39-202ENST00000409025 LCE2AQ5TA79 106 aaPredicted RBP8.25□□□□□ -1.09
USP39-202ENST00000409025 C10orf95Q9H7T3 257 aa8.23□□□□□ -1.09
USP39-202ENST00000409025 PLAC4Q8WY50 150 aa8.2□□□□□ -1.1
USP39-202ENST00000409025 KRTAP19-8Q3LI54 63 aa8.11□□□□□ -1.11
USP39-202ENST00000409025 KRTAP9-3Q9BYQ3 159 aa8.09□□□□□ -1.11
USP39-202ENST00000409025 MT1BP07438 61 aa7.99□□□□□ -1.13
USP39-202ENST00000409025 TNP1P09430 55 aa7.94□□□□□ -1.14
USP39-202ENST00000409025 PP632Q6XCG6 107 aa7.84□□□□□ -1.16
USP39-202ENST00000409025 LCE2BO14633 110 aa7.83□□□□□ -1.16
USP39-202ENST00000409025 MT1XP80297 61 aa7.79□□□□□ -1.16
USP39-202ENST00000409025 KRTAP10-5P60370 271 aa7.78□□□□□ -1.16
USP39-202ENST00000409025 KRTAP23-1A1A580 65 aa7.75□□□□□ -1.17
USP39-202ENST00000409025 LCE2DQ5TA82 110 aaPredicted RBP7.71□□□□□ -1.18
USP39-202ENST00000409025 PRO2289Q9P1D8 64 aa7.7□□□□□ -1.18
USP39-202ENST00000409025 LCE3AQ5TA76 89 aa7.54□□□□□ -1.2
USP39-202ENST00000409025 USH2AO75445 5202 aa7.5□□□□□ -1.21
USP39-202ENST00000409025 KRTAP10-7P60409 375 aaPredicted RBP7.5□□□□□ -1.21
USP39-202ENST00000409025 KRTAP10-12P60413 245 aa7.49□□□□□ -1.21
USP39-202ENST00000409025 KRTAP9-2Q9BYQ4 174 aa7.49□□□□□ -1.21
USP39-202ENST00000409025 FSIP2Q5CZC0 6907 aa7.43□□□□□ -1.22
USP39-202ENST00000409025 KRTAP15-1Q3LI76 137 aa7.42□□□□□ -1.22
USP39-202ENST00000409025 KRTAP8-1Q8IUC2 63 aa7.39□□□□□ -1.23
USP39-202ENST00000409025 SSPOA2VEC9 5147 aa7.3□□□□□ -1.24
USP39-202ENST00000409025 KRTAP19-6Q3LI70 58 aa7.29□□□□□ -1.24
USP39-202ENST00000409025 KRTAP12-3P60328 96 aa7.24□□□□□ -1.25
USP39-202ENST00000409025 CRCT1Q9UGL9 99 aa7.17□□□□□ -1.26
USP39-202ENST00000409025 KRTAP4-8A0A0G2JLE6 195 aa7.14□□□□□ -1.27
USP39-202ENST00000409025 KRTAP4-8Q9BYQ9 185 aa7.14□□□□□ -1.27
USP39-202ENST00000409025 KRTAP19-5Q3LI72 72 aa7.11□□□□□ -1.27
USP39-202ENST00000409025 FCGBPQ9Y6R7 5405 aaPredicted RBP7.04□□□□□ -1.28
USP39-202ENST00000409025 SPRR5A0A1B0GTR4 108 aa7.03□□□□□ -1.28
USP39-202ENST00000409025 KRTAP9-6A0A140TA67 174 aa7.01□□□□□ -1.29
USP39-202ENST00000409025 H3BS24 57 aa7.01□□□□□ -1.29
USP39-202ENST00000409025 KMT2DO14686 5537 aa7.01□□□□□ -1.29
USP39-202ENST00000409025 NDUFAF8A1L188 74 aa6.97□□□□□ -1.29
USP39-202ENST00000409025 LUZP6Q538Z0 58 aa6.96□□□□□ -1.3
USP39-202ENST00000409025 KRTAP19-7Q3SYF9 63 aa6.94□□□□□ -1.3
USP39-202ENST00000409025 MT1EP04732 61 aa6.81□□□□□ -1.32
USP39-202ENST00000409025 LCE3CQ5T5A8 94 aa6.78□□□□□ -1.32
USP39-202ENST00000409025 MACF1Q9UPN3 7388 aaKnown RBP6.74□□□□□ -1.33
USP39-202ENST00000409025 KRTAP19-4Q3LI73 84 aa6.72□□□□□ -1.33
USP39-202ENST00000409025 MT1LQ93083 61 aa6.71□□□□□ -1.34
USP39-202ENST00000409025 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms