RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 LCA10Q71F78 164 aa12.64□□□□□ -0.39
DNMT3A-206ENST00000406659 SEC61GP60059 68 aa12.63□□□□□ -0.39
DNMT3A-206ENST00000406659 CDC42SE1Q9NRR8 79 aa12.62□□□□□ -0.39
DNMT3A-206ENST00000406659 LRP2P98164 4655 aa12.52□□□□□ -0.4
DNMT3A-206ENST00000406659 LPAP08519 4548 aa12.5□□□□□ -0.41
DNMT3A-206ENST00000406659 UQCR11O14957 56 aa12.49□□□□□ -0.41
DNMT3A-206ENST00000406659 SEC61BP60468 96 aaKnown RBP12.48□□□□□ -0.41
DNMT3A-206ENST00000406659 S4R3F8 94 aa12.48□□□□□ -0.41
DNMT3A-206ENST00000406659 H1FX-AS1Q4G0G2 97 aa12.45□□□□□ -0.42
DNMT3A-206ENST00000406659 RBM12B-AS1Q9P1G2 102 aa12.45□□□□□ -0.42
DNMT3A-206ENST00000406659 KRTAP3-3Q9BYR6 98 aa12.42□□□□□ -0.42
DNMT3A-206ENST00000406659 MIR22HGQ0VDD5 57 aa12.4□□□□□ -0.42
DNMT3A-206ENST00000406659 SPATA8Q6RVD6 105 aa12.4□□□□□ -0.42
DNMT3A-206ENST00000406659 PCLOQ9Y6V0 5065 aa12.37□□□□□ -0.43
DNMT3A-206ENST00000406659 PMAIP1Q13794 54 aa12.32□□□□□ -0.44
DNMT3A-206ENST00000406659 A0A1B0GU33 70 aa12.28□□□□□ -0.44
DNMT3A-206ENST00000406659 KRTAP4-1Q9BYQ7 146 aa12.17□□□□□ -0.46
DNMT3A-206ENST00000406659 H0YAA0 97 aa12.15□□□□□ -0.46
DNMT3A-206ENST00000406659 A6NN06 94 aa12.14□□□□□ -0.47
DNMT3A-206ENST00000406659 CSAG1Q6PB30 78 aa12.14□□□□□ -0.47
DNMT3A-206ENST00000406659 KRTAP10-6P60371 365 aaPredicted RBP12.11□□□□□ -0.47
DNMT3A-206ENST00000406659 KRTAP3-2Q9BYR7 98 aa12.1□□□□□ -0.47
DNMT3A-206ENST00000406659 MUC17Q685J3 4493 aa12.08□□□□□ -0.48
DNMT3A-206ENST00000406659 HERC1Q15751 4861 aa12.01□□□□□ -0.49
DNMT3A-206ENST00000406659 ADM2Q7Z4H4 148 aa12□□□□□ -0.49
DNMT3A-206ENST00000406659 P0C880 135 aa11.97□□□□□ -0.49
DNMT3A-206ENST00000406659 KTN1-AS1Q86SY8 53 aa11.9□□□□□ -0.51
DNMT3A-206ENST00000406659 KRTAP19-2Q3LHN2 52 aa11.87□□□□□ -0.51
DNMT3A-206ENST00000406659 KRTAP13-4Q3LI77 160 aa11.86□□□□□ -0.51
DNMT3A-206ENST00000406659 HMCN2Q8NDA2 5059 aa11.84□□□□□ -0.51
DNMT3A-206ENST00000406659 K7ERS5 55 aa11.77□□□□□ -0.52
DNMT3A-206ENST00000406659 A0A0D9SG42 100 aa11.75□□□□□ -0.53
DNMT3A-206ENST00000406659 M0QZ58 72 aa11.68□□□□□ -0.54
DNMT3A-206ENST00000406659 FLGP20930 4061 aaPredicted RBP11.58□□□□□ -0.56
DNMT3A-206ENST00000406659 MUC2Q02817 5179 aa11.58□□□□□ -0.56
DNMT3A-206ENST00000406659 R4GN34 69 aa11.52□□□□□ -0.57
DNMT3A-206ENST00000406659 PRAC1Q96KF2 57 aa11.5□□□□□ -0.57
DNMT3A-206ENST00000406659 KRTAP12-2P59991 146 aa11.44□□□□□ -0.58
DNMT3A-206ENST00000406659 KRTAP12-1P59990 96 aa11.44□□□□□ -0.58
DNMT3A-206ENST00000406659 LCE2CQ5TA81 110 aa11.44□□□□□ -0.58
DNMT3A-206ENST00000406659 SPINT4Q6UDR6 99 aa11.44□□□□□ -0.58
DNMT3A-206ENST00000406659 LORP23490 312 aaPredicted RBP11.43□□□□□ -0.58
DNMT3A-206ENST00000406659 LINC01554Q52M75 96 aa11.39□□□□□ -0.59
DNMT3A-206ENST00000406659 ROMO1P60602 79 aa11.34□□□□□ -0.59
DNMT3A-206ENST00000406659 UBR4Q5T4S7 5183 aa11.31□□□□□ -0.6
DNMT3A-206ENST00000406659 RNF213Q63HN8 5207 aa11.3□□□□□ -0.6
DNMT3A-206ENST00000406659 M0R2T5 61 aa11.21□□□□□ -0.61
DNMT3A-206ENST00000406659 CRIPTQ9P021 101 aa11.19□□□□□ -0.62
DNMT3A-206ENST00000406659 MT1HP80294 61 aa11.18□□□□□ -0.62
DNMT3A-206ENST00000406659 KRTAP25-1Q3LHN0 102 aa11.1□□□□□ -0.63
DNMT3A-206ENST00000406659 FAT4Q6V0I7 4981 aa11.05□□□□□ -0.64
DNMT3A-206ENST00000406659 CAMK2N1Q7Z7J9 78 aa10.88□□□□□ -0.67
DNMT3A-206ENST00000406659 MT2AP02795 61 aa10.86□□□□□ -0.67
DNMT3A-206ENST00000406659 KRTAP10-10P60014 251 aa10.85□□□□□ -0.67
DNMT3A-206ENST00000406659 SPRR2GQ9BYE4 73 aa10.85□□□□□ -0.67
DNMT3A-206ENST00000406659 KRTAP9-8Q9BYQ0 159 aa10.83□□□□□ -0.68
DNMT3A-206ENST00000406659 MT1FP04733 61 aa10.81□□□□□ -0.68
DNMT3A-206ENST00000406659 C10orf95Q9H7T3 257 aa10.8□□□□□ -0.68
DNMT3A-206ENST00000406659 KRTAP19-1Q8IUB9 90 aa10.78□□□□□ -0.68
DNMT3A-206ENST00000406659 PLAC4Q8WY50 150 aa10.67□□□□□ -0.7
DNMT3A-206ENST00000406659 KRTAP19-8Q3LI54 63 aa10.49□□□□□ -0.73
DNMT3A-206ENST00000406659 KRTAP9-3Q9BYQ3 159 aa10.42□□□□□ -0.74
DNMT3A-206ENST00000406659 TNP1P09430 55 aa10.39□□□□□ -0.75
DNMT3A-206ENST00000406659 LCE2AQ5TA79 106 aaPredicted RBP10.39□□□□□ -0.75
DNMT3A-206ENST00000406659 LCE2BO14633 110 aa10.35□□□□□ -0.75
DNMT3A-206ENST00000406659 MT1BP07438 61 aa10.32□□□□□ -0.76
DNMT3A-206ENST00000406659 PP632Q6XCG6 107 aa10.31□□□□□ -0.76
DNMT3A-206ENST00000406659 KRTAP23-1A1A580 65 aa10.15□□□□□ -0.78
DNMT3A-206ENST00000406659 KRTAP10-5P60370 271 aa10.1□□□□□ -0.79
DNMT3A-206ENST00000406659 MT1XP80297 61 aa10.1□□□□□ -0.79
DNMT3A-206ENST00000406659 PRO2289Q9P1D8 64 aa9.95□□□□□ -0.82
DNMT3A-206ENST00000406659 KRTAP15-1Q3LI76 137 aa9.92□□□□□ -0.82
DNMT3A-206ENST00000406659 LCE3AQ5TA76 89 aa9.88□□□□□ -0.83
DNMT3A-206ENST00000406659 LOC100996750A0A140TA64 210 aa9.83□□□□□ -0.84
DNMT3A-206ENST00000406659 KRTAP4-6Q9BYQ5 205 aa9.83□□□□□ -0.84
DNMT3A-206ENST00000406659 KRTAP10-12P60413 245 aa9.75□□□□□ -0.85
DNMT3A-206ENST00000406659 KRTAP10-7P60409 375 aaPredicted RBP9.74□□□□□ -0.85
DNMT3A-206ENST00000406659 KRTAP8-1Q8IUC2 63 aa9.65□□□□□ -0.87
DNMT3A-206ENST00000406659 USH2AO75445 5202 aa9.64□□□□□ -0.87
DNMT3A-206ENST00000406659 KRTAP12-3P60328 96 aa9.46□□□□□ -0.9
DNMT3A-206ENST00000406659 NDUFAF8A1L188 74 aa9.4□□□□□ -0.9
DNMT3A-206ENST00000406659 KRTAP9-2Q9BYQ4 174 aa9.34□□□□□ -0.91
DNMT3A-206ENST00000406659 SSPOA2VEC9 5147 aa9.32□□□□□ -0.92
DNMT3A-206ENST00000406659 KRTAP19-6Q3LI70 58 aa9.32□□□□□ -0.92
DNMT3A-206ENST00000406659 SPRR5A0A1B0GTR4 108 aa9.29□□□□□ -0.92
DNMT3A-206ENST00000406659 LUZP6Q538Z0 58 aa9.28□□□□□ -0.92
DNMT3A-206ENST00000406659 KRTAP19-5Q3LI72 72 aa9.26□□□□□ -0.93
DNMT3A-206ENST00000406659 KRTAP4-8A0A0G2JLE6 195 aa9.25□□□□□ -0.93
DNMT3A-206ENST00000406659 KRTAP4-8Q9BYQ9 185 aa9.25□□□□□ -0.93
DNMT3A-206ENST00000406659 FSIP2Q5CZC0 6907 aa9.23□□□□□ -0.93
DNMT3A-206ENST00000406659 KMT2DO14686 5537 aa9.09□□□□□ -0.95
DNMT3A-206ENST00000406659 KRTAP19-7Q3SYF9 63 aa8.99□□□□□ -0.97
DNMT3A-206ENST00000406659 H3BS24 57 aa8.98□□□□□ -0.97
DNMT3A-206ENST00000406659 CRCT1Q9UGL9 99 aa8.95□□□□□ -0.98
DNMT3A-206ENST00000406659 LCE3CQ5T5A8 94 aa8.87□□□□□ -0.99
DNMT3A-206ENST00000406659 FCGBPQ9Y6R7 5405 aaPredicted RBP8.85□□□□□ -0.99
DNMT3A-206ENST00000406659 MT1EP04732 61 aa8.81□□□□□ -1
DNMT3A-206ENST00000406659 KRTAP9-6A0A140TA67 174 aa8.72□□□□□ -1.01
DNMT3A-206ENST00000406659 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.72□□□□□ -1.01
DNMT3A-206ENST00000406659 KRTAP19-4Q3LI73 84 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms