RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 IGKV2D-30A0A075B6S6 120 aa4.71□□□□□ -1.66
VPS53-203ENST00000401468 MPLKIPQ8TAP9 179 aa4.71□□□□□ -1.66
VPS53-203ENST00000401468 SSPOA2VEC9 5147 aa4.7□□□□□ -1.66
VPS53-203ENST00000401468 SYNE2Q8WXH0 6885 aaKnown RBP4.69□□□□□ -1.66
VPS53-203ENST00000401468 UQCRQO14949 82 aa4.69□□□□□ -1.66
VPS53-203ENST00000401468 HRES1P13985 223 aa4.69□□□□□ -1.66
VPS53-203ENST00000401468 SPINK7P58062 85 aa4.68□□□□□ -1.66
VPS53-203ENST00000401468 C5orf47Q569G3 176 aa4.68□□□□□ -1.66
VPS53-203ENST00000401468 OCR1Q9BZK8 76 aa4.68□□□□□ -1.66
VPS53-203ENST00000401468 MACF1Q9UPN3 7388 aaKnown RBP4.65□□□□□ -1.66
VPS53-203ENST00000401468 TRAV22A0A0B4J277 110 aa4.65□□□□□ -1.67
VPS53-203ENST00000401468 ATOX1O00244 68 aa4.64□□□□□ -1.67
VPS53-203ENST00000401468 C7orf65Q6ZTY9 151 aa4.64□□□□□ -1.67
VPS53-203ENST00000401468 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
VPS53-203ENST00000401468 SMIM20Q8N5G0 67 aa4.62□□□□□ -1.67
VPS53-203ENST00000401468 USH2AO75445 5202 aa4.61□□□□□ -1.67
VPS53-203ENST00000401468 FAM236AA0A1B0GUQ0 79 aa4.61□□□□□ -1.67
VPS53-203ENST00000401468 FAM236BA0A1B0GV22 79 aa4.61□□□□□ -1.67
VPS53-203ENST00000401468 COX7CP15954 63 aa4.61□□□□□ -1.67
VPS53-203ENST00000401468 KRTAP5-11Q6L8G4 156 aa4.61□□□□□ -1.67
VPS53-203ENST00000401468 TMEM258P61165 79 aa4.6□□□□□ -1.67
VPS53-203ENST00000401468 LOC101927531A0A1B0GV80 90 aa4.59□□□□□ -1.67
VPS53-203ENST00000401468 H0Y9P7 68 aa4.59□□□□□ -1.67
VPS53-203ENST00000401468 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.59□□□□□ -1.67
VPS53-203ENST00000401468 CYP4F30PQ9H0H9 118 aa4.59□□□□□ -1.67
VPS53-203ENST00000401468 RBM12B-AS1Q9P1G2 102 aa4.59□□□□□ -1.67
VPS53-203ENST00000401468 CCDC179H3BU77 68 aa4.58□□□□□ -1.68
VPS53-203ENST00000401468 TRAV7A0A075B6U4 112 aa4.57□□□□□ -1.68
VPS53-203ENST00000401468 H3BPC8 53 aa4.57□□□□□ -1.68
VPS53-203ENST00000401468 SERP2Q8N6R1 65 aa4.55□□□□□ -1.68
VPS53-203ENST00000401468 C1orf64Q8NEQ6 169 aa4.55□□□□□ -1.68
VPS53-203ENST00000401468 MP68P56378 58 aa4.54□□□□□ -1.68
VPS53-203ENST00000401468 LINC00208Q96KT6 92 aa4.54□□□□□ -1.68
VPS53-203ENST00000401468 FAM236DA0A1B0GTK5 79 aa4.53□□□□□ -1.68
VPS53-203ENST00000401468 FAM236CP0DP71 79 aa4.53□□□□□ -1.68
VPS53-203ENST00000401468 C4orf26Q17RF5 130 aa4.52□□□□□ -1.69
VPS53-203ENST00000401468 NDUFC1O43677 76 aa4.51□□□□□ -1.69
VPS53-203ENST00000401468 ATP5EP56381 51 aaPredicted RBP4.51□□□□□ -1.69
VPS53-203ENST00000401468 KLKP1Q107X0 134 aa4.5□□□□□ -1.69
VPS53-203ENST00000401468 H1FX-AS1Q4G0G2 97 aa4.49□□□□□ -1.69
VPS53-203ENST00000401468 NEBP20929 6669 aa4.48□□□□□ -1.69
VPS53-203ENST00000401468 MT2AP02795 61 aa4.48□□□□□ -1.69
VPS53-203ENST00000401468 MT1FP04733 61 aa4.47□□□□□ -1.69
VPS53-203ENST00000401468 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
VPS53-203ENST00000401468 SERP1Q9Y6X1 66 aa4.46□□□□□ -1.7
VPS53-203ENST00000401468 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
VPS53-203ENST00000401468 A8MUN3 132 aa4.44□□□□□ -1.7
VPS53-203ENST00000401468 SMIM26A0A096LP01 95 aa4.43□□□□□ -1.7
VPS53-203ENST00000401468 KRTAP20-1Q3LI63 56 aa4.43□□□□□ -1.7
VPS53-203ENST00000401468 KRTAP6-3Q3LI67 103 aa4.43□□□□□ -1.7
VPS53-203ENST00000401468 KRTAP10-10P60014 251 aa4.42□□□□□ -1.7
VPS53-203ENST00000401468 C20orf197Q8N268 126 aa4.42□□□□□ -1.7
VPS53-203ENST00000401468 DMAC1Q96GE9 116 aa4.41□□□□□ -1.7
VPS53-203ENST00000401468 MT3P25713 68 aa4.4□□□□□ -1.71
VPS53-203ENST00000401468 SNURFQ9Y675 71 aa4.4□□□□□ -1.71
VPS53-203ENST00000401468 SPANXA2-OT1Q8N9U9 137 aa4.39□□□□□ -1.71
VPS53-203ENST00000401468 LCA10Q71F78 164 aa4.38□□□□□ -1.71
VPS53-203ENST00000401468 S4R3F8 94 aa4.38□□□□□ -1.71
VPS53-203ENST00000401468 CYSTM1Q9H1C7 97 aa4.35□□□□□ -1.71
VPS53-203ENST00000401468 H7BZZ5 65 aa4.34□□□□□ -1.71
VPS53-203ENST00000401468 ACYP2P14621 99 aa4.31□□□□□ -1.72
VPS53-203ENST00000401468 CSAG1Q6PB30 78 aa4.31□□□□□ -1.72
VPS53-203ENST00000401468 V9GYY9 64 aa4.3□□□□□ -1.72
VPS53-203ENST00000401468 H0YAA0 97 aa4.28□□□□□ -1.72
VPS53-203ENST00000401468 MUC12Q9UKN1 5478 aa4.28□□□□□ -1.72
VPS53-203ENST00000401468 Q1T7F1 81 aa4.23□□□□□ -1.73
VPS53-203ENST00000401468 SEC61GP60059 68 aa4.2□□□□□ -1.74
VPS53-203ENST00000401468 COA5Q86WW8 74 aa4.2□□□□□ -1.74
VPS53-203ENST00000401468 KRTAP19-6Q3LI70 58 aa4.19□□□□□ -1.74
VPS53-203ENST00000401468 SPTSSBQ8NFR3 76 aa4.19□□□□□ -1.74
VPS53-203ENST00000401468 PMAIP1Q13794 54 aa4.18□□□□□ -1.74
VPS53-203ENST00000401468 GPR98Q8WXG9 6306 aa4.18□□□□□ -1.74
VPS53-203ENST00000401468 BRK1Q8WUW1 75 aa4.17□□□□□ -1.74
VPS53-203ENST00000401468 CHKB-CPT1BH3BT56 60 aa4.16□□□□□ -1.74
VPS53-203ENST00000401468 ADM2Q7Z4H4 148 aa4.15□□□□□ -1.75
VPS53-203ENST00000401468 SPRR2GQ9BYE4 73 aa4.15□□□□□ -1.75
VPS53-203ENST00000401468 CRIPTQ9P021 101 aa4.15□□□□□ -1.75
VPS53-203ENST00000401468 KMT2DO14686 5537 aa4.14□□□□□ -1.75
VPS53-203ENST00000401468 KRTAP2-3P0C7H8 128 aa4.12□□□□□ -1.75
VPS53-203ENST00000401468 KRTAP2-4Q9BYR9 128 aa4.12□□□□□ -1.75
VPS53-203ENST00000401468 P0C880 135 aa4.11□□□□□ -1.75
VPS53-203ENST00000401468 KRTAP10-5P60370 271 aa4.11□□□□□ -1.75
VPS53-203ENST00000401468 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.75
VPS53-203ENST00000401468 MT1BP07438 61 aa4.05□□□□□ -1.76
VPS53-203ENST00000401468 MDN1Q9NU22 5596 aa4.03□□□□□ -1.76
VPS53-203ENST00000401468 KTN1-AS1Q86SY8 53 aa4.03□□□□□ -1.76
VPS53-203ENST00000401468 A6NN06 94 aa4.02□□□□□ -1.77
VPS53-203ENST00000401468 KRTAP5-1Q6L8H4 278 aa4.01□□□□□ -1.77
VPS53-203ENST00000401468 R4GN34 69 aa4.01□□□□□ -1.77
VPS53-203ENST00000401468 M0QZ58 72 aa4□□□□□ -1.77
VPS53-203ENST00000401468 Q5VV11 94 aa4□□□□□ -1.77
VPS53-203ENST00000401468 CDC42SE1Q9NRR8 79 aa3.98□□□□□ -1.77
VPS53-203ENST00000401468 LINC01558Q9Y6Z2 57 aa3.98□□□□□ -1.77
VPS53-203ENST00000401468 KRTAP5-9P26371 169 aa3.97□□□□□ -1.77
VPS53-203ENST00000401468 KRTAP13-4Q3LI77 160 aa3.96□□□□□ -1.78
VPS53-203ENST00000401468 A0A1B0GU69 56 aa3.95□□□□□ -1.78
VPS53-203ENST00000401468 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
VPS53-203ENST00000401468 A0A1B0GU33 70 aa3.93□□□□□ -1.78
VPS53-203ENST00000401468 PSPHP1O15172 72 aa3.93□□□□□ -1.78
VPS53-203ENST00000401468 KRTAP10-12P60413 245 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms