RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SCGB1A1P11684 91 aa13.24□□□□□ -0.29
HMGB1-205ENST00000399494 LCA10Q71F78 164 aa13.2□□□□□ -0.3
HMGB1-205ENST00000399494 CSAG1Q6PB30 78 aa13.16□□□□□ -0.3
HMGB1-205ENST00000399494 IMUPQ9GZP8 106 aa13.16□□□□□ -0.3
HMGB1-205ENST00000399494 MT-ATP8P03928 68 aa13.14□□□□□ -0.31
HMGB1-205ENST00000399494 KLKP1Q107X0 134 aa13.09□□□□□ -0.31
HMGB1-205ENST00000399494 H3BPC8 53 aa13.07□□□□□ -0.32
HMGB1-205ENST00000399494 FAM236AA0A1B0GUQ0 79 aa13.03□□□□□ -0.32
HMGB1-205ENST00000399494 FAM236BA0A1B0GV22 79 aa13.03□□□□□ -0.32
HMGB1-205ENST00000399494 A8MUN3 132 aa13□□□□□ -0.33
HMGB1-205ENST00000399494 KRTAP3-3Q9BYR6 98 aa12.99□□□□□ -0.33
HMGB1-205ENST00000399494 NEBP20929 6669 aa12.98□□□□□ -0.33
HMGB1-205ENST00000399494 SMIM20Q8N5G0 67 aa12.93□□□□□ -0.34
HMGB1-205ENST00000399494 A6NN06 94 aa12.92□□□□□ -0.34
HMGB1-205ENST00000399494 NDUFC1O43677 76 aa12.91□□□□□ -0.34
HMGB1-205ENST00000399494 MT1BP07438 61 aa12.9□□□□□ -0.34
HMGB1-205ENST00000399494 TRAV7A0A075B6U4 112 aa12.87□□□□□ -0.35
HMGB1-205ENST00000399494 MUC12Q9UKN1 5478 aa12.83□□□□□ -0.35
HMGB1-205ENST00000399494 Q5VV11 94 aa12.81□□□□□ -0.36
HMGB1-205ENST00000399494 KRTAP19-8Q3LI54 63 aa12.79□□□□□ -0.36
HMGB1-205ENST00000399494 SPRR2GQ9BYE4 73 aa12.77□□□□□ -0.37
HMGB1-205ENST00000399494 DMAC1Q96GE9 116 aa12.74□□□□□ -0.37
HMGB1-205ENST00000399494 KRTAP10-5P60370 271 aa12.71□□□□□ -0.37
HMGB1-205ENST00000399494 KRTAP20-1Q3LI63 56 aa12.69□□□□□ -0.38
HMGB1-205ENST00000399494 H0YAA0 97 aa12.64□□□□□ -0.39
HMGB1-205ENST00000399494 KRTAP5-9P26371 169 aa12.62□□□□□ -0.39
HMGB1-205ENST00000399494 CRIPTQ9P021 101 aa12.59□□□□□ -0.39
HMGB1-205ENST00000399494 SNURFQ9Y675 71 aa12.59□□□□□ -0.39
HMGB1-205ENST00000399494 SERP2Q8N6R1 65 aa12.57□□□□□ -0.4
HMGB1-205ENST00000399494 ADM2Q7Z4H4 148 aa12.56□□□□□ -0.4
HMGB1-205ENST00000399494 ACYP2P14621 99 aa12.54□□□□□ -0.4
HMGB1-205ENST00000399494 C20orf197Q8N268 126 aa12.51□□□□□ -0.41
HMGB1-205ENST00000399494 KMT2DO14686 5537 aa12.48□□□□□ -0.41
HMGB1-205ENST00000399494 MDN1Q9NU22 5596 aa12.44□□□□□ -0.42
HMGB1-205ENST00000399494 CHKB-CPT1BH3BT56 60 aa12.36□□□□□ -0.43
HMGB1-205ENST00000399494 SPTSSBQ8NFR3 76 aa12.36□□□□□ -0.43
HMGB1-205ENST00000399494 SPANXA2-OT1Q8N9U9 137 aa12.35□□□□□ -0.43
HMGB1-205ENST00000399494 P0C880 135 aa12.28□□□□□ -0.44
HMGB1-205ENST00000399494 COX7CP15954 63 aa12.27□□□□□ -0.45
HMGB1-205ENST00000399494 KRTAP2-3P0C7H8 128 aa12.25□□□□□ -0.45
HMGB1-205ENST00000399494 KRTAP2-4Q9BYR9 128 aa12.25□□□□□ -0.45
HMGB1-205ENST00000399494 R4GN34 69 aa12.24□□□□□ -0.45
HMGB1-205ENST00000399494 KRTAP3-2Q9BYR7 98 aa12.19□□□□□ -0.46
HMGB1-205ENST00000399494 M0QZ58 72 aa12.16□□□□□ -0.46
HMGB1-205ENST00000399494 SPRR2FQ96RM1 72 aa12.09□□□□□ -0.47
HMGB1-205ENST00000399494 ANAPC13Q9BS18 74 aa12.06□□□□□ -0.48
HMGB1-205ENST00000399494 SPRR2EP22531 72 aa12.04□□□□□ -0.48
HMGB1-205ENST00000399494 SPRR2BP35325 72 aa12.04□□□□□ -0.48
HMGB1-205ENST00000399494 SPRR2AP35326 72 aa12.04□□□□□ -0.48
HMGB1-205ENST00000399494 COA5Q86WW8 74 aa12.02□□□□□ -0.49
HMGB1-205ENST00000399494 PLAC4Q8WY50 150 aa12.01□□□□□ -0.49
HMGB1-205ENST00000399494 H7BZZ5 65 aa11.99□□□□□ -0.49
HMGB1-205ENST00000399494 CYSTM1Q9H1C7 97 aa11.99□□□□□ -0.49
HMGB1-205ENST00000399494 LINC01554Q52M75 96 aa11.98□□□□□ -0.49
HMGB1-205ENST00000399494 MT1XP80297 61 aa11.95□□□□□ -0.5
HMGB1-205ENST00000399494 PRO2289Q9P1D8 64 aa11.95□□□□□ -0.5
HMGB1-205ENST00000399494 KRTAP8-1Q8IUC2 63 aa11.87□□□□□ -0.51
HMGB1-205ENST00000399494 LCE1AQ5T7P2 110 aa11.85□□□□□ -0.51
HMGB1-205ENST00000399494 KRTAP2-2Q9BYT5 123 aa11.83□□□□□ -0.52
HMGB1-205ENST00000399494 KRTAP2-1Q9BYU5 128 aa11.83□□□□□ -0.52
HMGB1-205ENST00000399494 CCDC179H3BU77 68 aa11.76□□□□□ -0.53
HMGB1-205ENST00000399494 KRTAP12-2P59991 146 aa11.76□□□□□ -0.53
HMGB1-205ENST00000399494 SEC61GP60059 68 aa11.74□□□□□ -0.53
HMGB1-205ENST00000399494 SERP1Q9Y6X1 66 aa11.7□□□□□ -0.54
HMGB1-205ENST00000399494 SPRR2DP22532 72 aa11.65□□□□□ -0.54
HMGB1-205ENST00000399494 KRTAP4-8A0A0G2JLE6 195 aa11.64□□□□□ -0.55
HMGB1-205ENST00000399494 KRTAP4-8Q9BYQ9 185 aa11.64□□□□□ -0.55
HMGB1-205ENST00000399494 KRTAP13-4Q3LI77 160 aa11.59□□□□□ -0.55
HMGB1-205ENST00000399494 ATP5EP56381 51 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-205ENST00000399494 A0A1B0GU33 70 aa11.45□□□□□ -0.58
HMGB1-205ENST00000399494 A0A1B0GU69 56 aa11.43□□□□□ -0.58
HMGB1-205ENST00000399494 KRTAP10-7P60409 375 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-205ENST00000399494 LCE3BQ5TA77 95 aa11.39□□□□□ -0.59
HMGB1-205ENST00000399494 SPATA8Q6RVD6 105 aa11.38□□□□□ -0.59
HMGB1-205ENST00000399494 TMEM258P61165 79 aa11.37□□□□□ -0.59
HMGB1-205ENST00000399494 A0A0D9SG42 100 aa11.36□□□□□ -0.59
HMGB1-205ENST00000399494 KRTAP10-12P60413 245 aa11.35□□□□□ -0.59
HMGB1-205ENST00000399494 CAMK2N1Q7Z7J9 78 aa11.34□□□□□ -0.59
HMGB1-205ENST00000399494 PRR15LQ9BU68 103 aa11.22□□□□□ -0.61
HMGB1-205ENST00000399494 SPINT4Q6UDR6 99 aa11.19□□□□□ -0.62
HMGB1-205ENST00000399494 SMIM26A0A096LP01 95 aa11.15□□□□□ -0.62
HMGB1-205ENST00000399494 LINC01558Q9Y6Z2 57 aa11.11□□□□□ -0.63
HMGB1-205ENST00000399494 KRTAP12-1P59990 96 aa11.08□□□□□ -0.64
HMGB1-205ENST00000399494 A8MU10 97 aa11.02□□□□□ -0.65
HMGB1-205ENST00000399494 GPR98Q8WXG9 6306 aa10.86□□□□□ -0.67
HMGB1-205ENST00000399494 DSTQ03001 7570 aaKnown RBP10.84□□□□□ -0.67
HMGB1-205ENST00000399494 UQCR11O14957 56 aa10.82□□□□□ -0.68
HMGB1-205ENST00000399494 LCE5AQ5TCM9 118 aa10.77□□□□□ -0.69
HMGB1-205ENST00000399494 KRTAP4-9Q9BYQ8 210 aa10.76□□□□□ -0.69
HMGB1-205ENST00000399494 V9GYY9 64 aa10.72□□□□□ -0.69
HMGB1-205ENST00000399494 KRTAP19-7Q3SYF9 63 aa10.7□□□□□ -0.7
HMGB1-205ENST00000399494 KRTAP19-3Q7Z4W3 81 aa10.63□□□□□ -0.71
HMGB1-205ENST00000399494 MT1EP04732 61 aa10.62□□□□□ -0.71
HMGB1-205ENST00000399494 Q1T7F1 81 aa10.61□□□□□ -0.71
HMGB1-205ENST00000399494 PSPHP1O15172 72 aa10.6□□□□□ -0.71
HMGB1-205ENST00000399494 MIR22HGQ0VDD5 57 aa10.6□□□□□ -0.71
HMGB1-205ENST00000399494 PCP4P48539 62 aa10.58□□□□□ -0.72
HMGB1-205ENST00000399494 C10orf95Q9H7T3 257 aa10.55□□□□□ -0.72
HMGB1-205ENST00000399494 TNP1P09430 55 aa10.52□□□□□ -0.73
HMGB1-205ENST00000399494 LCE1DQ5T752 114 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms