RNA–Protein interactions for RNA: ENST00000394202.8

CNN3-202, Transcript of calponin 3, humanhuman

TSL 2 BASIC

Gene CNN3, Length 1,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-202ENST00000394202 KRTAP3-1Q9BYR8 98 aa11.79□□□□□ -0.52
CNN3-202ENST00000394202 LINC01558Q9Y6Z2 57 aa11.75□□□□□ -0.53
CNN3-202ENST00000394202 COX6B2Q6YFQ2 88 aa11.74□□□□□ -0.53
CNN3-202ENST00000394202 ACYP2P14621 99 aa11.72□□□□□ -0.53
CNN3-202ENST00000394202 KRTAP19-2Q3LHN2 52 aa11.72□□□□□ -0.53
CNN3-202ENST00000394202 CHKB-CPT1BH3BT56 60 aa11.72□□□□□ -0.53
CNN3-202ENST00000394202 RBM12B-AS1Q9P1G2 102 aa11.7□□□□□ -0.54
CNN3-202ENST00000394202 DMAC1Q96GE9 116 aa11.69□□□□□ -0.54
CNN3-202ENST00000394202 A6NED7 52 aa11.57□□□□□ -0.56
CNN3-202ENST00000394202 LCE2CQ5TA81 110 aa11.57□□□□□ -0.56
CNN3-202ENST00000394202 FAT4Q6V0I7 4981 aa11.57□□□□□ -0.56
CNN3-202ENST00000394202 H1FX-AS1Q4G0G2 97 aa11.55□□□□□ -0.56
CNN3-202ENST00000394202 FLGP20930 4061 aaPredicted RBP11.51□□□□□ -0.57
CNN3-202ENST00000394202 A8MU10 97 aa11.5□□□□□ -0.57
CNN3-202ENST00000394202 LCA10Q71F78 164 aa11.5□□□□□ -0.57
CNN3-202ENST00000394202 CDC42SE1Q9NRR8 79 aa11.48□□□□□ -0.57
CNN3-202ENST00000394202 S4R3F8 94 aa11.39□□□□□ -0.59
CNN3-202ENST00000394202 PMAIP1Q13794 54 aa11.37□□□□□ -0.59
CNN3-202ENST00000394202 KRTAP3-3Q9BYR6 98 aa11.37□□□□□ -0.59
CNN3-202ENST00000394202 SPTSSBQ8NFR3 76 aa11.34□□□□□ -0.59
CNN3-202ENST00000394202 A0A1B0GU69 56 aa11.32□□□□□ -0.6
CNN3-202ENST00000394202 MT1HP80294 61 aa11.32□□□□□ -0.6
CNN3-202ENST00000394202 A6NN06 94 aa11.21□□□□□ -0.61
CNN3-202ENST00000394202 CSAG1Q6PB30 78 aa11.16□□□□□ -0.62
CNN3-202ENST00000394202 M0R2T5 61 aa11.15□□□□□ -0.62
CNN3-202ENST00000394202 SPATA8Q6RVD6 105 aa11.14□□□□□ -0.63
CNN3-202ENST00000394202 KTN1-AS1Q86SY8 53 aa11.14□□□□□ -0.63
CNN3-202ENST00000394202 UQCR11O14957 56 aa11.12□□□□□ -0.63
CNN3-202ENST00000394202 LCE2AQ5TA79 106 aaPredicted RBP11.09□□□□□ -0.63
CNN3-202ENST00000394202 MIR22HGQ0VDD5 57 aa11.06□□□□□ -0.64
CNN3-202ENST00000394202 SEC61GP60059 68 aa11.05□□□□□ -0.64
CNN3-202ENST00000394202 KRTAP10-6P60371 365 aaPredicted RBP10.94□□□□□ -0.66
CNN3-202ENST00000394202 LORP23490 312 aaPredicted RBP10.89□□□□□ -0.67
CNN3-202ENST00000394202 ADM2Q7Z4H4 148 aa10.89□□□□□ -0.67
CNN3-202ENST00000394202 KRTAP3-2Q9BYR7 98 aa10.89□□□□□ -0.67
CNN3-202ENST00000394202 KRTAP9-8Q9BYQ0 159 aa10.88□□□□□ -0.67
CNN3-202ENST00000394202 H0YAA0 97 aa10.86□□□□□ -0.67
CNN3-202ENST00000394202 P0C880 135 aa10.83□□□□□ -0.68
CNN3-202ENST00000394202 MT2AP02795 61 aa10.81□□□□□ -0.68
CNN3-202ENST00000394202 A0A1B0GU33 70 aa10.76□□□□□ -0.69
CNN3-202ENST00000394202 MT1FP04733 61 aa10.76□□□□□ -0.69
CNN3-202ENST00000394202 KRTAP10-10P60014 251 aa10.68□□□□□ -0.7
CNN3-202ENST00000394202 PRAC1Q96KF2 57 aa10.57□□□□□ -0.72
CNN3-202ENST00000394202 KRTAP13-4Q3LI77 160 aa10.54□□□□□ -0.72
CNN3-202ENST00000394202 KRTAP9-3Q9BYQ3 159 aa10.5□□□□□ -0.73
CNN3-202ENST00000394202 R4GN34 69 aa10.48□□□□□ -0.73
CNN3-202ENST00000394202 M0QZ58 72 aa10.47□□□□□ -0.73
CNN3-202ENST00000394202 KRTAP19-1Q8IUB9 90 aa10.46□□□□□ -0.74
CNN3-202ENST00000394202 CRIPTQ9P021 101 aa10.46□□□□□ -0.74
CNN3-202ENST00000394202 K7ERS5 55 aa10.42□□□□□ -0.74
CNN3-202ENST00000394202 SPRR2GQ9BYE4 73 aa10.41□□□□□ -0.74
CNN3-202ENST00000394202 LINC01554Q52M75 96 aa10.34□□□□□ -0.75
CNN3-202ENST00000394202 A0A0D9SG42 100 aa10.28□□□□□ -0.76
CNN3-202ENST00000394202 LCE2BO14633 110 aa10.28□□□□□ -0.76
CNN3-202ENST00000394202 KRTAP19-8Q3LI54 63 aa10.17□□□□□ -0.78
CNN3-202ENST00000394202 KRTAP25-1Q3LHN0 102 aa10.15□□□□□ -0.78
CNN3-202ENST00000394202 ROMO1P60602 79 aa10.12□□□□□ -0.79
CNN3-202ENST00000394202 LCE2DQ5TA82 110 aaPredicted RBP10.12□□□□□ -0.79
CNN3-202ENST00000394202 USH2AO75445 5202 aa10.12□□□□□ -0.79
CNN3-202ENST00000394202 MT1BP07438 61 aa10.12□□□□□ -0.79
CNN3-202ENST00000394202 KRTAP12-1P59990 96 aa10.07□□□□□ -0.8
CNN3-202ENST00000394202 KRTAP12-2P59991 146 aa10.05□□□□□ -0.8
CNN3-202ENST00000394202 SPINT4Q6UDR6 99 aa10.03□□□□□ -0.8
CNN3-202ENST00000394202 FSIP2Q5CZC0 6907 aa9.98□□□□□ -0.81
CNN3-202ENST00000394202 PLAC4Q8WY50 150 aa9.95□□□□□ -0.82
CNN3-202ENST00000394202 KRTAP9-2Q9BYQ4 174 aa9.95□□□□□ -0.82
CNN3-202ENST00000394202 SSPOA2VEC9 5147 aa9.84□□□□□ -0.83
CNN3-202ENST00000394202 CAMK2N1Q7Z7J9 78 aa9.78□□□□□ -0.84
CNN3-202ENST00000394202 MT1XP80297 61 aa9.72□□□□□ -0.85
CNN3-202ENST00000394202 KRTAP10-5P60370 271 aa9.7□□□□□ -0.86
CNN3-202ENST00000394202 KRTAP19-6Q3LI70 58 aa9.65□□□□□ -0.86
CNN3-202ENST00000394202 C10orf95Q9H7T3 257 aa9.61□□□□□ -0.87
CNN3-202ENST00000394202 PRO2289Q9P1D8 64 aa9.53□□□□□ -0.88
CNN3-202ENST00000394202 CRCT1Q9UGL9 99 aa9.53□□□□□ -0.88
CNN3-202ENST00000394202 FCGBPQ9Y6R7 5405 aaPredicted RBP9.49□□□□□ -0.89
CNN3-202ENST00000394202 KRTAP10-7P60409 375 aaPredicted RBP9.33□□□□□ -0.92
CNN3-202ENST00000394202 KRTAP9-6A0A140TA67 174 aa9.24□□□□□ -0.93
CNN3-202ENST00000394202 TNP1P09430 55 aa9.24□□□□□ -0.93
CNN3-202ENST00000394202 KRTAP15-1Q3LI76 137 aa9.21□□□□□ -0.94
CNN3-202ENST00000394202 KMT2DO14686 5537 aa9.19□□□□□ -0.94
CNN3-202ENST00000394202 KRTAP10-12P60413 245 aa9.19□□□□□ -0.94
CNN3-202ENST00000394202 PP632Q6XCG6 107 aa9.1□□□□□ -0.95
CNN3-202ENST00000394202 KRTAP4-8A0A0G2JLE6 195 aa9.08□□□□□ -0.96
CNN3-202ENST00000394202 KRTAP4-8Q9BYQ9 185 aa9.08□□□□□ -0.96
CNN3-202ENST00000394202 MACF1Q9UPN3 7388 aaKnown RBP9.04□□□□□ -0.96
CNN3-202ENST00000394202 H3BS24 57 aa9.03□□□□□ -0.96
CNN3-202ENST00000394202 LCE3AQ5TA76 89 aa8.99□□□□□ -0.97
CNN3-202ENST00000394202 KRTAP23-1A1A580 65 aa8.9□□□□□ -0.99
CNN3-202ENST00000394202 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.84□□□□□ -0.99
CNN3-202ENST00000394202 SYNE2Q8WXH0 6885 aaKnown RBP8.84□□□□□ -0.99
CNN3-202ENST00000394202 NDUFAF8A1L188 74 aa8.83□□□□□ -1
CNN3-202ENST00000394202 KRTAP8-1Q8IUC2 63 aa8.81□□□□□ -1
CNN3-202ENST00000394202 KRTAP19-5Q3LI72 72 aa8.72□□□□□ -1.01
CNN3-202ENST00000394202 KRTAP19-7Q3SYF9 63 aa8.68□□□□□ -1.02
CNN3-202ENST00000394202 KRTAP12-3P60328 96 aa8.61□□□□□ -1.03
CNN3-202ENST00000394202 SPRR2FQ96RM1 72 aa8.57□□□□□ -1.04
CNN3-202ENST00000394202 MUC12Q9UKN1 5478 aa8.56□□□□□ -1.04
CNN3-202ENST00000394202 KRTAP5-9P26371 169 aa8.54□□□□□ -1.04
CNN3-202ENST00000394202 MT1EP04732 61 aa8.52□□□□□ -1.05
CNN3-202ENST00000394202 KRTAP6-3Q3LI67 103 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms