RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 DNAH8Q96JB1 4490 aa5.03□□□□□ -1.6
PTPRA-204ENST00000380393 LRP1BQ9NZR2 4599 aa5.01□□□□□ -1.61
PTPRA-204ENST00000380393 DYNC1H1Q14204 4646 aaKnown RBP4.98□□□□□ -1.61
PTPRA-204ENST00000380393 KRTAP10-1P60331 282 aa4.96□□□□□ -1.61
PTPRA-204ENST00000380393 EPPK1P58107 5090 aaKnown RBP4.96□□□□□ -1.62
PTPRA-204ENST00000380393 FAT1Q14517 4588 aa4.96□□□□□ -1.62
PTPRA-204ENST00000380393 VPS13BQ7Z7G8 4022 aa4.94□□□□□ -1.62
PTPRA-204ENST00000380393 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
PTPRA-204ENST00000380393 SMR3BP02814 79 aaPredicted RBP4.9□□□□□ -1.62
PTPRA-204ENST00000380393 KRTAP13-2Q52LG2 175 aa4.9□□□□□ -1.62
PTPRA-204ENST00000380393 KIAA1109Q2LD37 5005 aa4.9□□□□□ -1.62
PTPRA-204ENST00000380393 KRTAP3-1Q9BYR8 98 aa4.9□□□□□ -1.63
PTPRA-204ENST00000380393 S4R3F8 94 aa4.9□□□□□ -1.63
PTPRA-204ENST00000380393 PLAC4Q8WY50 150 aa4.89□□□□□ -1.63
PTPRA-204ENST00000380393 CAMK2N1Q7Z7J9 78 aa4.89□□□□□ -1.63
PTPRA-204ENST00000380393 APOBP04114 4563 aaKnown RBP4.89□□□□□ -1.63
PTPRA-204ENST00000380393 A0A1B0GVY2 172 aa4.87□□□□□ -1.63
PTPRA-204ENST00000380393 C9orf92A6NGG3 77 aa4.87□□□□□ -1.63
PTPRA-204ENST00000380393 XP32Q5T750 250 aa4.85□□□□□ -1.63
PTPRA-204ENST00000380393 KRTAP10-6P60371 365 aaPredicted RBP4.83□□□□□ -1.64
PTPRA-204ENST00000380393 KRTAP12-2P59991 146 aa4.83□□□□□ -1.64
PTPRA-204ENST00000380393 HSPG2P98160 4391 aa4.82□□□□□ -1.64
PTPRA-204ENST00000380393 KRTAP17-1Q9BYP8 105 aa4.8□□□□□ -1.64
PTPRA-204ENST00000380393 RYR1P21817 5038 aa4.78□□□□□ -1.64
PTPRA-204ENST00000380393 LRP1Q07954 4544 aaKnown RBP4.78□□□□□ -1.64
PTPRA-204ENST00000380393 MYCBP2O75592 4640 aa4.78□□□□□ -1.64
PTPRA-204ENST00000380393 KRTAP1-4P0C5Y4 121 aa4.73□□□□□ -1.65
PTPRA-204ENST00000380393 KRTAP12-1P59990 96 aa4.72□□□□□ -1.65
PTPRA-204ENST00000380393 PRO2289Q9P1D8 64 aa4.68□□□□□ -1.66
PTPRA-204ENST00000380393 KRTAP10-4P60372 401 aaPredicted RBP4.68□□□□□ -1.66
PTPRA-204ENST00000380393 PKHD1L1Q86WI1 4243 aa4.68□□□□□ -1.66
PTPRA-204ENST00000380393 KRTAP4-5Q9BYR2 181 aa4.67□□□□□ -1.66
PTPRA-204ENST00000380393 Q5VSD8 79 aa4.67□□□□□ -1.66
PTPRA-204ENST00000380393 ABCA13Q86UQ4 5058 aa4.67□□□□□ -1.66
PTPRA-204ENST00000380393 KRTAP10-8P60410 259 aa4.65□□□□□ -1.67
PTPRA-204ENST00000380393 BIRC6Q9NR09 4857 aa4.63□□□□□ -1.67
PTPRA-204ENST00000380393 HERC2O95714 4834 aa4.61□□□□□ -1.67
PTPRA-204ENST00000380393 FAT3Q8TDW7 4589 aa4.6□□□□□ -1.67
PTPRA-204ENST00000380393 PCLOQ9Y6V0 5065 aa4.59□□□□□ -1.67
PTPRA-204ENST00000380393 TNXBP22105 4242 aa4.59□□□□□ -1.67
PTPRA-204ENST00000380393 R4GN34 69 aa4.58□□□□□ -1.68
PTPRA-204ENST00000380393 LCE2BO14633 110 aa4.51□□□□□ -1.69
PTPRA-204ENST00000380393 HERC1Q15751 4861 aa4.51□□□□□ -1.69
PTPRA-204ENST00000380393 M0QZ58 72 aa4.48□□□□□ -1.69
PTPRA-204ENST00000380393 LPAP08519 4548 aa4.47□□□□□ -1.69
PTPRA-204ENST00000380393 RPS29P62273 56 aaKnown RBP4.47□□□□□ -1.69
PTPRA-204ENST00000380393 MT1HL1P0DM35 61 aa4.47□□□□□ -1.69
PTPRA-204ENST00000380393 LCE2CQ5TA81 110 aa4.45□□□□□ -1.7
PTPRA-204ENST00000380393 PP632Q6XCG6 107 aa4.43□□□□□ -1.7
PTPRA-204ENST00000380393 INE1O15225 51 aa4.42□□□□□ -1.7
PTPRA-204ENST00000380393 LRP2P98164 4655 aa4.42□□□□□ -1.7
PTPRA-204ENST00000380393 MUC2Q02817 5179 aa4.36□□□□□ -1.71
PTPRA-204ENST00000380393 SPRR5A0A1B0GTR4 108 aa4.34□□□□□ -1.72
PTPRA-204ENST00000380393 LCE2AQ5TA79 106 aaPredicted RBP4.32□□□□□ -1.72
PTPRA-204ENST00000380393 RNF213Q63HN8 5207 aa4.28□□□□□ -1.72
PTPRA-204ENST00000380393 HMCN2Q8NDA2 5059 aa4.27□□□□□ -1.73
PTPRA-204ENST00000380393 UBR4Q5T4S7 5183 aa4.27□□□□□ -1.73
PTPRA-204ENST00000380393 FAT4Q6V0I7 4981 aa4.14□□□□□ -1.75
PTPRA-204ENST00000380393 LORP23490 312 aaPredicted RBP4.13□□□□□ -1.75
PTPRA-204ENST00000380393 KRTAP4-1Q9BYQ7 146 aa4.12□□□□□ -1.75
PTPRA-204ENST00000380393 KRTAP23-1A1A580 65 aa4.11□□□□□ -1.75
PTPRA-204ENST00000380393 MUC17Q685J3 4493 aa4.08□□□□□ -1.76
PTPRA-204ENST00000380393 TNP1P09430 55 aa4.08□□□□□ -1.76
PTPRA-204ENST00000380393 KRTAP19-2Q3LHN2 52 aa3.9□□□□□ -1.79
PTPRA-204ENST00000380393 FLGP20930 4061 aaPredicted RBP3.88□□□□□ -1.79
PTPRA-204ENST00000380393 M0R2T5 61 aa3.79□□□□□ -1.8
PTPRA-204ENST00000380393 KRTAP10-10P60014 251 aa3.77□□□□□ -1.81
PTPRA-204ENST00000380393 MT1HP80294 61 aa3.77□□□□□ -1.81
PTPRA-204ENST00000380393 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
PTPRA-204ENST00000380393 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
PTPRA-204ENST00000380393 USH2AO75445 5202 aa3.67□□□□□ -1.82
PTPRA-204ENST00000380393 MT1FP04733 61 aa3.63□□□□□ -1.83
PTPRA-204ENST00000380393 KRTAP9-8Q9BYQ0 159 aa3.63□□□□□ -1.83
PTPRA-204ENST00000380393 KRTAP10-12P60413 245 aa3.62□□□□□ -1.83
PTPRA-204ENST00000380393 MT2AP02795 61 aa3.62□□□□□ -1.83
PTPRA-204ENST00000380393 KRTAP8-1Q8IUC2 63 aa3.61□□□□□ -1.83
PTPRA-204ENST00000380393 KRTAP12-3P60328 96 aa3.55□□□□□ -1.84
PTPRA-204ENST00000380393 KRTAP19-1Q8IUB9 90 aa3.52□□□□□ -1.85
PTPRA-204ENST00000380393 KRTAP9-3Q9BYQ3 159 aa3.48□□□□□ -1.85
PTPRA-204ENST00000380393 SPRR2GQ9BYE4 73 aa3.46□□□□□ -1.86
PTPRA-204ENST00000380393 KRTAP10-5P60370 271 aa3.43□□□□□ -1.86
PTPRA-204ENST00000380393 SSPOA2VEC9 5147 aa3.43□□□□□ -1.86
PTPRA-204ENST00000380393 MT1BP07438 61 aa3.39□□□□□ -1.87
PTPRA-204ENST00000380393 KMT2DO14686 5537 aa3.38□□□□□ -1.87
PTPRA-204ENST00000380393 KRTAP2-3P0C7H8 128 aa3.38□□□□□ -1.87
PTPRA-204ENST00000380393 KRTAP2-4Q9BYR9 128 aa3.38□□□□□ -1.87
PTPRA-204ENST00000380393 KRTAP2-1Q9BYU5 128 aa3.38□□□□□ -1.87
PTPRA-204ENST00000380393 LCE3CQ5T5A8 94 aa3.35□□□□□ -1.87
PTPRA-204ENST00000380393 KRTAP10-7P60409 375 aaPredicted RBP3.33□□□□□ -1.88
PTPRA-204ENST00000380393 KRTAP19-8Q3LI54 63 aa3.33□□□□□ -1.88
PTPRA-204ENST00000380393 MT1XP80297 61 aa3.32□□□□□ -1.88
PTPRA-204ENST00000380393 KRTAP9-6A8MVA2 160 aa3.3□□□□□ -1.88
PTPRA-204ENST00000380393 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
PTPRA-204ENST00000380393 KRTAP9-2Q9BYQ4 174 aa3.26□□□□□ -1.89
PTPRA-204ENST00000380393 KRTAP19-5Q3LI72 72 aa3.25□□□□□ -1.89
PTPRA-204ENST00000380393 KRTAP12-4P60329 112 aa3.24□□□□□ -1.89
PTPRA-204ENST00000380393 KRTAP2-2Q9BYT5 123 aa3.18□□□□□ -1.9
PTPRA-204ENST00000380393 LCE4AQ5TA78 99 aa3.18□□□□□ -1.9
PTPRA-204ENST00000380393 MACF1Q9UPN3 7388 aaKnown RBP3.17□□□□□ -1.9
PTPRA-204ENST00000380393 SYNE2Q8WXH0 6885 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms