RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 LRP1Q07954 4544 aaKnown RBP6.66□□□□□ -1.34
C9orf3-203ENST00000375315 KRTAP10-4P60372 401 aaPredicted RBP6.63□□□□□ -1.35
C9orf3-203ENST00000375315 HSPG2P98160 4391 aa6.6□□□□□ -1.35
C9orf3-203ENST00000375315 MYCBP2O75592 4640 aa6.6□□□□□ -1.35
C9orf3-203ENST00000375315 NDUFAF8A1L188 74 aa6.59□□□□□ -1.36
C9orf3-203ENST00000375315 C20orf166-AS1Q96NR2 134 aa6.58□□□□□ -1.36
C9orf3-203ENST00000375315 RYR1P21817 5038 aa6.58□□□□□ -1.36
C9orf3-203ENST00000375315 C9orf92A6NGG3 77 aa6.55□□□□□ -1.36
C9orf3-203ENST00000375315 KRTAP4-5Q9BYR2 181 aa6.54□□□□□ -1.36
C9orf3-203ENST00000375315 COX6B2Q6YFQ2 88 aa6.53□□□□□ -1.36
C9orf3-203ENST00000375315 TPRXLQ17RH7 258 aa6.5□□□□□ -1.37
C9orf3-203ENST00000375315 KRTAP15-1Q3LI76 137 aa6.5□□□□□ -1.37
C9orf3-203ENST00000375315 RPL37P61927 97 aaKnown RBP6.5□□□□□ -1.37
C9orf3-203ENST00000375315 A0A0A0MQY5 61 aa6.49□□□□□ -1.37
C9orf3-203ENST00000375315 KRTAP3-1Q9BYR8 98 aa6.45□□□□□ -1.38
C9orf3-203ENST00000375315 PKHD1L1Q86WI1 4243 aa6.45□□□□□ -1.38
C9orf3-203ENST00000375315 FAT3Q8TDW7 4589 aa6.43□□□□□ -1.38
C9orf3-203ENST00000375315 C10orf95Q9H7T3 257 aa6.4□□□□□ -1.38
C9orf3-203ENST00000375315 KRTAP10-8P60410 259 aa6.39□□□□□ -1.39
C9orf3-203ENST00000375315 A0A0D9SG42 100 aa6.36□□□□□ -1.39
C9orf3-203ENST00000375315 ABCA13Q86UQ4 5058 aa6.36□□□□□ -1.39
C9orf3-203ENST00000375315 MT1HL1P0DM35 61 aa6.34□□□□□ -1.39
C9orf3-203ENST00000375315 J3QL48 77 aa6.32□□□□□ -1.4
C9orf3-203ENST00000375315 TNXBP22105 4242 aa6.32□□□□□ -1.4
C9orf3-203ENST00000375315 HERC2O95714 4834 aa6.31□□□□□ -1.4
C9orf3-203ENST00000375315 KRTAP13-4Q3LI77 160 aa6.29□□□□□ -1.4
C9orf3-203ENST00000375315 KRTAP10-6P60371 365 aaPredicted RBP6.28□□□□□ -1.4
C9orf3-203ENST00000375315 RPS29P62273 56 aaKnown RBP6.28□□□□□ -1.4
C9orf3-203ENST00000375315 BIRC6Q9NR09 4857 aa6.26□□□□□ -1.41
C9orf3-203ENST00000375315 S4R3F8 94 aa6.24□□□□□ -1.41
C9orf3-203ENST00000375315 LUZP6Q538Z0 58 aa6.23□□□□□ -1.41
C9orf3-203ENST00000375315 LPAP08519 4548 aa6.22□□□□□ -1.41
C9orf3-203ENST00000375315 LRP2P98164 4655 aa6.18□□□□□ -1.42
C9orf3-203ENST00000375315 KRTAP3-2Q9BYR7 98 aa6.18□□□□□ -1.42
C9orf3-203ENST00000375315 PCLOQ9Y6V0 5065 aa6.16□□□□□ -1.42
C9orf3-203ENST00000375315 XP32Q5T750 250 aa6.16□□□□□ -1.42
C9orf3-203ENST00000375315 KRTAP12-2P59991 146 aa6.15□□□□□ -1.42
C9orf3-203ENST00000375315 KRTAP3-3Q9BYR6 98 aa6.14□□□□□ -1.43
C9orf3-203ENST00000375315 HERC1Q15751 4861 aa6.12□□□□□ -1.43
C9orf3-203ENST00000375315 KRTAP12-1P59990 96 aa6.08□□□□□ -1.44
C9orf3-203ENST00000375315 PLAC4Q8WY50 150 aa6.01□□□□□ -1.45
C9orf3-203ENST00000375315 MUC2Q02817 5179 aa6□□□□□ -1.45
C9orf3-203ENST00000375315 M0QZ58 72 aa5.95□□□□□ -1.46
C9orf3-203ENST00000375315 SEC61BP60468 96 aaKnown RBP5.86□□□□□ -1.47
C9orf3-203ENST00000375315 KRTAP4-1Q9BYQ7 146 aa5.86□□□□□ -1.47
C9orf3-203ENST00000375315 RNF213Q63HN8 5207 aa5.85□□□□□ -1.47
C9orf3-203ENST00000375315 UBR4Q5T4S7 5183 aa5.81□□□□□ -1.48
C9orf3-203ENST00000375315 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
C9orf3-203ENST00000375315 PP632Q6XCG6 107 aa5.72□□□□□ -1.49
C9orf3-203ENST00000375315 FAT4Q6V0I7 4981 aa5.71□□□□□ -1.49
C9orf3-203ENST00000375315 R4GN34 69 aa5.69□□□□□ -1.5
C9orf3-203ENST00000375315 MUC17Q685J3 4493 aa5.66□□□□□ -1.5
C9orf3-203ENST00000375315 CAMK2N1Q7Z7J9 78 aa5.57□□□□□ -1.52
C9orf3-203ENST00000375315 M0R2T5 61 aa5.57□□□□□ -1.52
C9orf3-203ENST00000375315 KRTAP19-2Q3LHN2 52 aa5.5□□□□□ -1.53
C9orf3-203ENST00000375315 PRO2289Q9P1D8 64 aa5.47□□□□□ -1.53
C9orf3-203ENST00000375315 SPRR5A0A1B0GTR4 108 aa5.45□□□□□ -1.54
C9orf3-203ENST00000375315 LORP23490 312 aaPredicted RBP5.44□□□□□ -1.54
C9orf3-203ENST00000375315 LCE2CQ5TA81 110 aa5.42□□□□□ -1.54
C9orf3-203ENST00000375315 FLGP20930 4061 aaPredicted RBP5.4□□□□□ -1.54
C9orf3-203ENST00000375315 KRTAP23-1A1A580 65 aa5.36□□□□□ -1.55
C9orf3-203ENST00000375315 MT1HP80294 61 aa5.35□□□□□ -1.55
C9orf3-203ENST00000375315 TNP1P09430 55 aa5.34□□□□□ -1.55
C9orf3-203ENST00000375315 INE1O15225 51 aa5.3□□□□□ -1.56
C9orf3-203ENST00000375315 KRTAP10-10P60014 251 aa5.26□□□□□ -1.57
C9orf3-203ENST00000375315 MT1FP04733 61 aa5.18□□□□□ -1.58
C9orf3-203ENST00000375315 MT2AP02795 61 aa5.17□□□□□ -1.58
C9orf3-203ENST00000375315 KRTAP9-8Q9BYQ0 159 aa5.13□□□□□ -1.59
C9orf3-203ENST00000375315 FSIP2Q5CZC0 6907 aa5.1□□□□□ -1.59
C9orf3-203ENST00000375315 USH2AO75445 5202 aa5.07□□□□□ -1.6
C9orf3-203ENST00000375315 KRTAP19-1Q8IUB9 90 aa5.06□□□□□ -1.6
C9orf3-203ENST00000375315 LCE2AQ5TA79 106 aaPredicted RBP4.99□□□□□ -1.61
C9orf3-203ENST00000375315 SPRR2GQ9BYE4 73 aa4.96□□□□□ -1.62
C9orf3-203ENST00000375315 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
C9orf3-203ENST00000375315 KRTAP9-3Q9BYQ3 159 aa4.92□□□□□ -1.62
C9orf3-203ENST00000375315 LCE2BO14633 110 aa4.87□□□□□ -1.63
C9orf3-203ENST00000375315 MT1BP07438 61 aa4.85□□□□□ -1.63
C9orf3-203ENST00000375315 KRTAP8-1Q8IUC2 63 aa4.81□□□□□ -1.64
C9orf3-203ENST00000375315 KRTAP19-8Q3LI54 63 aa4.79□□□□□ -1.64
C9orf3-203ENST00000375315 KMT2DO14686 5537 aa4.73□□□□□ -1.65
C9orf3-203ENST00000375315 MT1XP80297 61 aa4.72□□□□□ -1.65
C9orf3-203ENST00000375315 KRTAP10-5P60370 271 aa4.7□□□□□ -1.66
C9orf3-203ENST00000375315 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
C9orf3-203ENST00000375315 KRTAP10-12P60413 245 aa4.68□□□□□ -1.66
C9orf3-203ENST00000375315 SSPOA2VEC9 5147 aa4.68□□□□□ -1.66
C9orf3-203ENST00000375315 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
C9orf3-203ENST00000375315 KRTAP4-8A0A0G2JLE6 195 aa4.55□□□□□ -1.68
C9orf3-203ENST00000375315 KRTAP4-8Q9BYQ9 185 aa4.55□□□□□ -1.68
C9orf3-203ENST00000375315 FCGBPQ9Y6R7 5405 aaPredicted RBP4.46□□□□□ -1.7
C9orf3-203ENST00000375315 KRTAP9-2Q9BYQ4 174 aa4.44□□□□□ -1.7
C9orf3-203ENST00000375315 LCE3CQ5T5A8 94 aa4.44□□□□□ -1.7
C9orf3-203ENST00000375315 LCE2DQ5TA82 110 aaPredicted RBP4.39□□□□□ -1.71
C9orf3-203ENST00000375315 KRTAP19-6Q3LI70 58 aa4.38□□□□□ -1.71
C9orf3-203ENST00000375315 KRTAP19-5Q3LI72 72 aa4.36□□□□□ -1.71
C9orf3-203ENST00000375315 KRTAP2-3P0C7H8 128 aa4.35□□□□□ -1.71
C9orf3-203ENST00000375315 KRTAP2-4Q9BYR9 128 aa4.35□□□□□ -1.71
C9orf3-203ENST00000375315 KRTAP2-1Q9BYU5 128 aa4.35□□□□□ -1.71
C9orf3-203ENST00000375315 MACF1Q9UPN3 7388 aaKnown RBP4.34□□□□□ -1.72
C9orf3-203ENST00000375315 SYNE2Q8WXH0 6885 aaKnown RBP4.32□□□□□ -1.72
C9orf3-203ENST00000375315 MUC12Q9UKN1 5478 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms