RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 H3BS24 57 aa7.98□□□□□ -1.13
HMGA1-203ENST00000374116 UQCR11O14957 56 aa7.96□□□□□ -1.14
HMGA1-203ENST00000374116 MIR22HGQ0VDD5 57 aa7.96□□□□□ -1.14
HMGA1-203ENST00000374116 KRTAP16-1A8MUX0 517 aa7.95□□□□□ -1.14
HMGA1-203ENST00000374116 RPS29P62273 56 aaKnown RBP7.95□□□□□ -1.14
HMGA1-203ENST00000374116 HMCN2Q8NDA2 5059 aa7.88□□□□□ -1.15
HMGA1-203ENST00000374116 IGKV2-30P06310 120 aa7.87□□□□□ -1.15
HMGA1-203ENST00000374116 LPAP08519 4548 aa7.86□□□□□ -1.15
HMGA1-203ENST00000374116 CSAG1Q6PB30 78 aa7.85□□□□□ -1.15
HMGA1-203ENST00000374116 LRP2P98164 4655 aa7.8□□□□□ -1.16
HMGA1-203ENST00000374116 UBR4Q5T4S7 5183 aa7.75□□□□□ -1.17
HMGA1-203ENST00000374116 IGKV2D-30A0A075B6S6 120 aa7.75□□□□□ -1.17
HMGA1-203ENST00000374116 C9orf92A6NGG3 77 aa7.7□□□□□ -1.18
HMGA1-203ENST00000374116 TPRXLQ17RH7 258 aa7.68□□□□□ -1.18
HMGA1-203ENST00000374116 KRTAP25-1Q3LHN0 102 aa7.68□□□□□ -1.18
HMGA1-203ENST00000374116 C20orf166-AS1Q96NR2 134 aa7.68□□□□□ -1.18
HMGA1-203ENST00000374116 A8MUU9 505 aa7.67□□□□□ -1.18
HMGA1-203ENST00000374116 ROMO1P60602 79 aa7.63□□□□□ -1.19
HMGA1-203ENST00000374116 XP32Q5T750 250 aa7.6□□□□□ -1.19
HMGA1-203ENST00000374116 H0YAA0 97 aa7.56□□□□□ -1.2
HMGA1-203ENST00000374116 RNF213Q63HN8 5207 aa7.56□□□□□ -1.2
HMGA1-203ENST00000374116 MUC2Q02817 5179 aa7.52□□□□□ -1.21
HMGA1-203ENST00000374116 A0A1B0GU33 70 aa7.44□□□□□ -1.22
HMGA1-203ENST00000374116 RPL37P61927 97 aaKnown RBP7.44□□□□□ -1.22
HMGA1-203ENST00000374116 H1FX-AS1Q4G0G2 97 aa7.43□□□□□ -1.22
HMGA1-203ENST00000374116 KRTAP4-1Q9BYQ7 146 aa7.43□□□□□ -1.22
HMGA1-203ENST00000374116 SEC61BP60468 96 aaKnown RBP7.43□□□□□ -1.22
HMGA1-203ENST00000374116 MUC17Q685J3 4493 aa7.41□□□□□ -1.22
HMGA1-203ENST00000374116 KRTAP3-1Q9BYR8 98 aa7.41□□□□□ -1.22
HMGA1-203ENST00000374116 P0C880 135 aa7.37□□□□□ -1.23
HMGA1-203ENST00000374116 COX6B2Q6YFQ2 88 aa7.37□□□□□ -1.23
HMGA1-203ENST00000374116 K7ERS5 55 aa7.36□□□□□ -1.23
HMGA1-203ENST00000374116 FAT4Q6V0I7 4981 aa7.17□□□□□ -1.26
HMGA1-203ENST00000374116 CRIPTQ9P021 101 aa7.17□□□□□ -1.26
HMGA1-203ENST00000374116 KRTAP19-2Q3LHN2 52 aa7.15□□□□□ -1.26
HMGA1-203ENST00000374116 KRTAP15-1Q3LI76 137 aa7.13□□□□□ -1.27
HMGA1-203ENST00000374116 KRTAP3-3Q9BYR6 98 aa7.13□□□□□ -1.27
HMGA1-203ENST00000374116 SPINT4Q6UDR6 99 aa7.12□□□□□ -1.27
HMGA1-203ENST00000374116 S4R3F8 94 aa7.12□□□□□ -1.27
HMGA1-203ENST00000374116 LCE2CQ5TA81 110 aa7.11□□□□□ -1.27
HMGA1-203ENST00000374116 KRTAP9-2Q9BYQ4 174 aa7.1□□□□□ -1.27
HMGA1-203ENST00000374116 KRTAP10-6P60371 365 aaPredicted RBP7.05□□□□□ -1.28
HMGA1-203ENST00000374116 LCE2AQ5TA79 106 aaPredicted RBP7.05□□□□□ -1.28
HMGA1-203ENST00000374116 NDUFAF8A1L188 74 aa7.01□□□□□ -1.29
HMGA1-203ENST00000374116 MT1HP80294 61 aa7.01□□□□□ -1.29
HMGA1-203ENST00000374116 KRTAP13-4Q3LI77 160 aa6.99□□□□□ -1.29
HMGA1-203ENST00000374116 KRTAP3-2Q9BYR7 98 aa6.98□□□□□ -1.29
HMGA1-203ENST00000374116 FLGP20930 4061 aaPredicted RBP6.98□□□□□ -1.29
HMGA1-203ENST00000374116 KRTAP9-6A0A140TA67 174 aa6.92□□□□□ -1.3
HMGA1-203ENST00000374116 M0R2T5 61 aa6.92□□□□□ -1.3
HMGA1-203ENST00000374116 C10orf95Q9H7T3 257 aa6.92□□□□□ -1.3
HMGA1-203ENST00000374116 A0A0D9SG42 100 aa6.87□□□□□ -1.31
HMGA1-203ENST00000374116 KRTAP12-2P59991 146 aa6.8□□□□□ -1.32
HMGA1-203ENST00000374116 A0A0A0MQY5 61 aa6.8□□□□□ -1.32
HMGA1-203ENST00000374116 LORP23490 312 aaPredicted RBP6.78□□□□□ -1.32
HMGA1-203ENST00000374116 KRTAP12-1P59990 96 aa6.78□□□□□ -1.32
HMGA1-203ENST00000374116 LCE2DQ5TA82 110 aaPredicted RBP6.75□□□□□ -1.33
HMGA1-203ENST00000374116 M0QZ58 72 aa6.74□□□□□ -1.33
HMGA1-203ENST00000374116 KRTAP9-8Q9BYQ0 159 aa6.68□□□□□ -1.34
HMGA1-203ENST00000374116 CRCT1Q9UGL9 99 aa6.68□□□□□ -1.34
HMGA1-203ENST00000374116 MT2AP02795 61 aa6.62□□□□□ -1.35
HMGA1-203ENST00000374116 FSIP2Q5CZC0 6907 aa6.6□□□□□ -1.35
HMGA1-203ENST00000374116 MT1FP04733 61 aa6.6□□□□□ -1.35
HMGA1-203ENST00000374116 R4GN34 69 aa6.58□□□□□ -1.36
HMGA1-203ENST00000374116 LUZP6Q538Z0 58 aa6.57□□□□□ -1.36
HMGA1-203ENST00000374116 KRTAP10-10P60014 251 aa6.56□□□□□ -1.36
HMGA1-203ENST00000374116 PLAC4Q8WY50 150 aa6.53□□□□□ -1.36
HMGA1-203ENST00000374116 KRTAP9-3Q9BYQ3 159 aa6.45□□□□□ -1.38
HMGA1-203ENST00000374116 LCE2BO14633 110 aa6.39□□□□□ -1.39
HMGA1-203ENST00000374116 PP632Q6XCG6 107 aa6.38□□□□□ -1.39
HMGA1-203ENST00000374116 USH2AO75445 5202 aa6.3□□□□□ -1.4
HMGA1-203ENST00000374116 KRTAP19-1Q8IUB9 90 aa6.29□□□□□ -1.4
HMGA1-203ENST00000374116 CAMK2N1Q7Z7J9 78 aa6.22□□□□□ -1.41
HMGA1-203ENST00000374116 KRTAP9-7A8MTY7 169 aa6.21□□□□□ -1.42
HMGA1-203ENST00000374116 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.21□□□□□ -1.42
HMGA1-203ENST00000374116 SPRR2GQ9BYE4 73 aa6.21□□□□□ -1.42
HMGA1-203ENST00000374116 SSPOA2VEC9 5147 aa6.19□□□□□ -1.42
HMGA1-203ENST00000374116 SPRR5A0A1B0GTR4 108 aa6.16□□□□□ -1.42
HMGA1-203ENST00000374116 KRTAP23-1A1A580 65 aa6.13□□□□□ -1.43
HMGA1-203ENST00000374116 MT1BP07438 61 aa6.12□□□□□ -1.43
HMGA1-203ENST00000374116 KRTAP19-8Q3LI54 63 aa6.11□□□□□ -1.43
HMGA1-203ENST00000374116 FCGBPQ9Y6R7 5405 aaPredicted RBP6.04□□□□□ -1.44
HMGA1-203ENST00000374116 KRTAP19-6Q3LI70 58 aa6.02□□□□□ -1.45
HMGA1-203ENST00000374116 TNP1P09430 55 aa5.99□□□□□ -1.45
HMGA1-203ENST00000374116 PRO2289Q9P1D8 64 aa5.93□□□□□ -1.46
HMGA1-203ENST00000374116 KRTAP10-5P60370 271 aa5.87□□□□□ -1.47
HMGA1-203ENST00000374116 MT1XP80297 61 aa5.83□□□□□ -1.48
HMGA1-203ENST00000374116 MACF1Q9UPN3 7388 aaKnown RBP5.82□□□□□ -1.48
HMGA1-203ENST00000374116 INE1O15225 51 aa5.81□□□□□ -1.48
HMGA1-203ENST00000374116 SYNE2Q8WXH0 6885 aaKnown RBP5.81□□□□□ -1.48
HMGA1-203ENST00000374116 KRTAP6-3Q3LI67 103 aa5.74□□□□□ -1.49
HMGA1-203ENST00000374116 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
HMGA1-203ENST00000374116 KMT2DO14686 5537 aa5.63□□□□□ -1.51
HMGA1-203ENST00000374116 KRTAP10-7P60409 375 aaPredicted RBP5.61□□□□□ -1.51
HMGA1-203ENST00000374116 KRTAP8-1Q8IUC2 63 aa5.56□□□□□ -1.52
HMGA1-203ENST00000374116 KRTAP4-8A0A0G2JLE6 195 aa5.54□□□□□ -1.52
HMGA1-203ENST00000374116 KRTAP4-8Q9BYQ9 185 aa5.54□□□□□ -1.52
HMGA1-203ENST00000374116 KRTAP10-12P60413 245 aa5.53□□□□□ -1.52
HMGA1-203ENST00000374116 NEBP20929 6669 aa5.48□□□□□ -1.53
HMGA1-203ENST00000374116 KRTAP20-1Q3LI63 56 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms