RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ALMS1Q8TCU4 4167 aa4.77□□□□□ -1.65
SYNE1-209ENST00000367257 TENM3Q9P273 2699 aa4.77□□□□□ -1.65
SYNE1-209ENST00000367257 DNAH8Q96JB1 4490 aa4.75□□□□□ -1.65
SYNE1-209ENST00000367257 DNAH5Q8TE73 4624 aa4.74□□□□□ -1.65
SYNE1-209ENST00000367257 RYR3Q15413 4870 aa4.73□□□□□ -1.65
SYNE1-209ENST00000367257 TPRXLQ17RH7 258 aa4.73□□□□□ -1.65
SYNE1-209ENST00000367257 PKHD1P08F94 4074 aa4.71□□□□□ -1.65
SYNE1-209ENST00000367257 RYR2Q92736 4967 aa4.71□□□□□ -1.66
SYNE1-209ENST00000367257 KRTAP1-4P0C5Y4 121 aa4.71□□□□□ -1.66
SYNE1-209ENST00000367257 XP32Q5T750 250 aa4.7□□□□□ -1.66
SYNE1-209ENST00000367257 PKHD1L1Q86WI1 4243 aa4.7□□□□□ -1.66
SYNE1-209ENST00000367257 PRO2289Q9P1D8 64 aa4.67□□□□□ -1.66
SYNE1-209ENST00000367257 KRTAP10-8P60410 259 aa4.66□□□□□ -1.66
SYNE1-209ENST00000367257 VPS13BQ7Z7G8 4022 aa4.64□□□□□ -1.67
SYNE1-209ENST00000367257 KRTAP15-1Q3LI76 137 aa4.6□□□□□ -1.67
SYNE1-209ENST00000367257 FAT3Q8TDW7 4589 aa4.59□□□□□ -1.67
SYNE1-209ENST00000367257 TGP01266 2768 aa4.57□□□□□ -1.68
SYNE1-209ENST00000367257 KRTAP13-3Q3SY46 172 aa4.57□□□□□ -1.68
SYNE1-209ENST00000367257 DYNC1H1Q14204 4646 aaKnown RBP4.55□□□□□ -1.68
SYNE1-209ENST00000367257 TENM2Q9NT68 2774 aa4.55□□□□□ -1.68
SYNE1-209ENST00000367257 APOBP04114 4563 aaKnown RBP4.53□□□□□ -1.68
SYNE1-209ENST00000367257 INE1O15225 51 aa4.49□□□□□ -1.69
SYNE1-209ENST00000367257 KRTAP13-4Q3LI77 160 aa4.48□□□□□ -1.69
SYNE1-209ENST00000367257 LRP1BQ9NZR2 4599 aa4.47□□□□□ -1.69
SYNE1-209ENST00000367257 EPPK1P58107 5090 aaKnown RBP4.47□□□□□ -1.69
SYNE1-209ENST00000367257 HSPG2P98160 4391 aa4.44□□□□□ -1.7
SYNE1-209ENST00000367257 KRTAP12-2P59991 146 aa4.44□□□□□ -1.7
SYNE1-209ENST00000367257 KRTAP10-10P60014 251 aa4.44□□□□□ -1.7
SYNE1-209ENST00000367257 TNXBP22105 4242 aa4.38□□□□□ -1.71
SYNE1-209ENST00000367257 KRTAP12-1P59990 96 aa4.36□□□□□ -1.71
SYNE1-209ENST00000367257 A0A1B0GVY2 172 aa4.36□□□□□ -1.71
SYNE1-209ENST00000367257 SRRM2Q9UQ35 2752 aaKnown RBP4.31□□□□□ -1.72
SYNE1-209ENST00000367257 RYR1P21817 5038 aa4.3□□□□□ -1.72
SYNE1-209ENST00000367257 FAT1Q14517 4588 aa4.26□□□□□ -1.73
SYNE1-209ENST00000367257 ABCA13Q86UQ4 5058 aa4.25□□□□□ -1.73
SYNE1-209ENST00000367257 KRTAP23-1A1A580 65 aa4.24□□□□□ -1.73
SYNE1-209ENST00000367257 HERC2O95714 4834 aa4.23□□□□□ -1.73
SYNE1-209ENST00000367257 KRTAP17-1Q9BYP8 105 aa4.22□□□□□ -1.73
SYNE1-209ENST00000367257 KRTAP3-1Q9BYR8 98 aa4.21□□□□□ -1.74
SYNE1-209ENST00000367257 KRTAP10-6P60371 365 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-209ENST00000367257 PCLOQ9Y6V0 5065 aa4.17□□□□□ -1.74
SYNE1-209ENST00000367257 KIAA1109Q2LD37 5005 aa4.15□□□□□ -1.74
SYNE1-209ENST00000367257 LRP1Q07954 4544 aaKnown RBP4.14□□□□□ -1.75
SYNE1-209ENST00000367257 MYCBP2O75592 4640 aa4.14□□□□□ -1.75
SYNE1-209ENST00000367257 BIRC6Q9NR09 4857 aa4.13□□□□□ -1.75
SYNE1-209ENST00000367257 KRTAP10-4P60372 401 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-209ENST00000367257 KRTAP3-2Q9BYR7 98 aa4.02□□□□□ -1.77
SYNE1-209ENST00000367257 KRTAP10-12P60413 245 aa3.99□□□□□ -1.77
SYNE1-209ENST00000367257 LPAP08519 4548 aa3.97□□□□□ -1.77
SYNE1-209ENST00000367257 KRTAP3-3Q9BYR6 98 aa3.96□□□□□ -1.78
SYNE1-209ENST00000367257 MUC17Q685J3 4493 aa3.94□□□□□ -1.78
SYNE1-209ENST00000367257 HMCN2Q8NDA2 5059 aa3.93□□□□□ -1.78
SYNE1-209ENST00000367257 HERC1Q15751 4861 aa3.92□□□□□ -1.78
SYNE1-209ENST00000367257 MT1HL1P0DM35 61 aa3.92□□□□□ -1.78
SYNE1-209ENST00000367257 KRTAP12-3P60328 96 aa3.89□□□□□ -1.79
SYNE1-209ENST00000367257 FLGP20930 4061 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-209ENST00000367257 CRCT1Q9UGL9 99 aa3.82□□□□□ -1.8
SYNE1-209ENST00000367257 KRTAP19-4Q3LI73 84 aa3.82□□□□□ -1.8
SYNE1-209ENST00000367257 LRP2P98164 4655 aa3.79□□□□□ -1.8
SYNE1-209ENST00000367257 KRTAP4-5Q9BYR2 181 aa3.79□□□□□ -1.8
SYNE1-209ENST00000367257 LCE3AQ5TA76 89 aa3.75□□□□□ -1.81
SYNE1-209ENST00000367257 MUC2Q02817 5179 aa3.72□□□□□ -1.81
SYNE1-209ENST00000367257 UBR4Q5T4S7 5183 aa3.66□□□□□ -1.82
SYNE1-209ENST00000367257 KRTAP19-2Q3LHN2 52 aa3.62□□□□□ -1.83
SYNE1-209ENST00000367257 KRTAP8-1Q8IUC2 63 aa3.58□□□□□ -1.84
SYNE1-209ENST00000367257 RNF213Q63HN8 5207 aa3.57□□□□□ -1.84
SYNE1-209ENST00000367257 SPRR2GQ9BYE4 73 aa3.56□□□□□ -1.84
SYNE1-209ENST00000367257 KRTAP10-5P60370 271 aa3.54□□□□□ -1.84
SYNE1-209ENST00000367257 LORP23490 312 aaPredicted RBP3.53□□□□□ -1.84
SYNE1-209ENST00000367257 FAT4Q6V0I7 4981 aa3.5□□□□□ -1.85
SYNE1-209ENST00000367257 SPRR5A0A1B0GTR4 108 aa3.44□□□□□ -1.86
SYNE1-209ENST00000367257 MT1HP80294 61 aa3.41□□□□□ -1.86
SYNE1-209ENST00000367257 LCE3CQ5T5A8 94 aa3.41□□□□□ -1.86
SYNE1-209ENST00000367257 MT2AP02795 61 aa3.4□□□□□ -1.86
SYNE1-209ENST00000367257 KRTAP4-1Q9BYQ7 146 aa3.4□□□□□ -1.86
SYNE1-209ENST00000367257 LCE2CQ5TA81 110 aa3.4□□□□□ -1.87
SYNE1-209ENST00000367257 KRTAP10-7P60409 375 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-209ENST00000367257 KRTAP19-8Q3LI54 63 aa3.32□□□□□ -1.88
SYNE1-209ENST00000367257 KRTAP19-5Q3LI72 72 aa3.32□□□□□ -1.88
SYNE1-209ENST00000367257 LCE2AQ5TA79 106 aaPredicted RBP3.28□□□□□ -1.89
SYNE1-209ENST00000367257 MT1FP04733 61 aa3.27□□□□□ -1.89
SYNE1-209ENST00000367257 SPRR2FQ96RM1 72 aa3.21□□□□□ -1.9
SYNE1-209ENST00000367257 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
SYNE1-209ENST00000367257 KRTAP19-1Q8IUB9 90 aa3.13□□□□□ -1.91
SYNE1-209ENST00000367257 KRTAP9-8Q9BYQ0 159 aa3.12□□□□□ -1.91
SYNE1-209ENST00000367257 MT1GP13640 62 aa3.11□□□□□ -1.91
SYNE1-209ENST00000367257 SSPOA2VEC9 5147 aa3.1□□□□□ -1.91
SYNE1-209ENST00000367257 SYNE1Q8NF91 8797 aaKnown RBP3.09□□□□□ -1.91
SYNE1-209ENST00000367257 MT1XP80297 61 aa3.09□□□□□ -1.92
SYNE1-209ENST00000367257 KRTAP9-2Q9BYQ4 174 aa3.05□□□□□ -1.92
SYNE1-209ENST00000367257 KRTAP9-6A0A140TA67 174 aa3.04□□□□□ -1.92
SYNE1-209ENST00000367257 SPRR2EP22531 72 aa3.03□□□□□ -1.92
SYNE1-209ENST00000367257 SPRR2BP35325 72 aa3.03□□□□□ -1.92
SYNE1-209ENST00000367257 SPRR2AP35326 72 aa3.03□□□□□ -1.92
SYNE1-209ENST00000367257 USH2AO75445 5202 aa3.03□□□□□ -1.92
SYNE1-209ENST00000367257 MT1BP07438 61 aa3.03□□□□□ -1.92
SYNE1-209ENST00000367257 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
SYNE1-209ENST00000367257 LCE3DQ9BYE3 92 aa3.01□□□□□ -1.93
SYNE1-209ENST00000367257 LCE2BO14633 110 aa3□□□□□ -1.93
SYNE1-209ENST00000367257 KRTAP9-3Q9BYQ3 159 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms