RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 H3BS24 57 aa7.18□□□□□ -1.26
SQSTM1-201ENST00000360718 SPATA8Q6RVD6 105 aa7.12□□□□□ -1.27
SQSTM1-201ENST00000360718 UQCR11O14957 56 aa7.12□□□□□ -1.27
SQSTM1-201ENST00000360718 C20orf166-AS1Q96NR2 134 aa7.11□□□□□ -1.27
SQSTM1-201ENST00000360718 A8MUU9 505 aa7.11□□□□□ -1.27
SQSTM1-201ENST00000360718 MIR22HGQ0VDD5 57 aa7.08□□□□□ -1.28
SQSTM1-201ENST00000360718 LPAP08519 4548 aa7.07□□□□□ -1.28
SQSTM1-201ENST00000360718 TPRXLQ17RH7 258 aa7.06□□□□□ -1.28
SQSTM1-201ENST00000360718 HERC1Q15751 4861 aa7.05□□□□□ -1.28
SQSTM1-201ENST00000360718 XP32Q5T750 250 aa7.04□□□□□ -1.28
SQSTM1-201ENST00000360718 RPL37P61927 97 aaKnown RBP7.01□□□□□ -1.29
SQSTM1-201ENST00000360718 LRP2P98164 4655 aa6.99□□□□□ -1.29
SQSTM1-201ENST00000360718 LINC01554Q52M75 96 aa6.98□□□□□ -1.29
SQSTM1-201ENST00000360718 PRAC1Q96KF2 57 aa6.97□□□□□ -1.29
SQSTM1-201ENST00000360718 ADM2Q7Z4H4 148 aa6.93□□□□□ -1.3
SQSTM1-201ENST00000360718 HMCN2Q8NDA2 5059 aa6.9□□□□□ -1.3
SQSTM1-201ENST00000360718 KRTAP3-1Q9BYR8 98 aa6.85□□□□□ -1.31
SQSTM1-201ENST00000360718 SEC61BP60468 96 aaKnown RBP6.85□□□□□ -1.31
SQSTM1-201ENST00000360718 A0A1B0GU33 70 aa6.83□□□□□ -1.32
SQSTM1-201ENST00000360718 COX6B2Q6YFQ2 88 aa6.82□□□□□ -1.32
SQSTM1-201ENST00000360718 CSAG1Q6PB30 78 aa6.8□□□□□ -1.32
SQSTM1-201ENST00000360718 H1FX-AS1Q4G0G2 97 aa6.79□□□□□ -1.32
SQSTM1-201ENST00000360718 H0YAA0 97 aa6.78□□□□□ -1.32
SQSTM1-201ENST00000360718 KRTAP4-1Q9BYQ7 146 aa6.73□□□□□ -1.33
SQSTM1-201ENST00000360718 MUC17Q685J3 4493 aa6.72□□□□□ -1.33
SQSTM1-201ENST00000360718 K7ERS5 55 aa6.69□□□□□ -1.34
SQSTM1-201ENST00000360718 MUC2Q02817 5179 aa6.67□□□□□ -1.34
SQSTM1-201ENST00000360718 KRTAP25-1Q3LHN0 102 aa6.64□□□□□ -1.35
SQSTM1-201ENST00000360718 UBR4Q5T4S7 5183 aa6.64□□□□□ -1.35
SQSTM1-201ENST00000360718 S4R3F8 94 aa6.57□□□□□ -1.36
SQSTM1-201ENST00000360718 KRTAP3-3Q9BYR6 98 aa6.57□□□□□ -1.36
SQSTM1-201ENST00000360718 KRTAP10-6P60371 365 aaPredicted RBP6.54□□□□□ -1.36
SQSTM1-201ENST00000360718 A0A0A0MQY5 61 aa6.53□□□□□ -1.36
SQSTM1-201ENST00000360718 RNF213Q63HN8 5207 aa6.53□□□□□ -1.36
SQSTM1-201ENST00000360718 KRTAP19-2Q3LHN2 52 aa6.52□□□□□ -1.37
SQSTM1-201ENST00000360718 ROMO1P60602 79 aa6.52□□□□□ -1.37
SQSTM1-201ENST00000360718 KRTAP3-2Q9BYR7 98 aa6.48□□□□□ -1.37
SQSTM1-201ENST00000360718 KRTAP13-4Q3LI77 160 aa6.44□□□□□ -1.38
SQSTM1-201ENST00000360718 A0A0D9SG42 100 aa6.43□□□□□ -1.38
SQSTM1-201ENST00000360718 FAT4Q6V0I7 4981 aa6.4□□□□□ -1.39
SQSTM1-201ENST00000360718 P0C880 135 aa6.39□□□□□ -1.39
SQSTM1-201ENST00000360718 LCE2CQ5TA81 110 aa6.39□□□□□ -1.39
SQSTM1-201ENST00000360718 CRIPTQ9P021 101 aa6.36□□□□□ -1.39
SQSTM1-201ENST00000360718 FLGP20930 4061 aaPredicted RBP6.35□□□□□ -1.39
SQSTM1-201ENST00000360718 M0QZ58 72 aa6.3□□□□□ -1.4
SQSTM1-201ENST00000360718 KRTAP12-2P59991 146 aa6.26□□□□□ -1.41
SQSTM1-201ENST00000360718 SPINT4Q6UDR6 99 aa6.25□□□□□ -1.41
SQSTM1-201ENST00000360718 MT1HP80294 61 aa6.24□□□□□ -1.41
SQSTM1-201ENST00000360718 KRTAP12-1P59990 96 aa6.24□□□□□ -1.41
SQSTM1-201ENST00000360718 M0R2T5 61 aa6.21□□□□□ -1.42
SQSTM1-201ENST00000360718 C10orf95Q9H7T3 257 aa6.14□□□□□ -1.43
SQSTM1-201ENST00000360718 R4GN34 69 aa6.11□□□□□ -1.43
SQSTM1-201ENST00000360718 KRTAP15-1Q3LI76 137 aa6.1□□□□□ -1.43
SQSTM1-201ENST00000360718 NDUFAF8A1L188 74 aa6.08□□□□□ -1.44
SQSTM1-201ENST00000360718 LCE2AQ5TA79 106 aaPredicted RBP6.06□□□□□ -1.44
SQSTM1-201ENST00000360718 LORP23490 312 aaPredicted RBP6.04□□□□□ -1.44
SQSTM1-201ENST00000360718 KRTAP9-8Q9BYQ0 159 aa6.01□□□□□ -1.45
SQSTM1-201ENST00000360718 MT2AP02795 61 aa5.98□□□□□ -1.45
SQSTM1-201ENST00000360718 MT1FP04733 61 aa5.96□□□□□ -1.46
SQSTM1-201ENST00000360718 KRTAP10-10P60014 251 aa5.94□□□□□ -1.46
SQSTM1-201ENST00000360718 LUZP6Q538Z0 58 aa5.83□□□□□ -1.48
SQSTM1-201ENST00000360718 KRTAP19-1Q8IUB9 90 aa5.83□□□□□ -1.48
SQSTM1-201ENST00000360718 SPRR2GQ9BYE4 73 aa5.82□□□□□ -1.48
SQSTM1-201ENST00000360718 CAMK2N1Q7Z7J9 78 aa5.81□□□□□ -1.48
SQSTM1-201ENST00000360718 KRTAP9-3Q9BYQ3 159 aa5.79□□□□□ -1.48
SQSTM1-201ENST00000360718 PP632Q6XCG6 107 aa5.78□□□□□ -1.48
SQSTM1-201ENST00000360718 PLAC4Q8WY50 150 aa5.75□□□□□ -1.49
SQSTM1-201ENST00000360718 LCE2BO14633 110 aa5.67□□□□□ -1.5
SQSTM1-201ENST00000360718 KRTAP19-8Q3LI54 63 aa5.66□□□□□ -1.5
SQSTM1-201ENST00000360718 MT1BP07438 61 aa5.63□□□□□ -1.51
SQSTM1-201ENST00000360718 TNP1P09430 55 aa5.62□□□□□ -1.51
SQSTM1-201ENST00000360718 LCE2DQ5TA82 110 aaPredicted RBP5.6□□□□□ -1.51
SQSTM1-201ENST00000360718 KRTAP23-1A1A580 65 aa5.59□□□□□ -1.51
SQSTM1-201ENST00000360718 USH2AO75445 5202 aa5.56□□□□□ -1.52
SQSTM1-201ENST00000360718 FSIP2Q5CZC0 6907 aa5.43□□□□□ -1.54
SQSTM1-201ENST00000360718 MT1XP80297 61 aa5.43□□□□□ -1.54
SQSTM1-201ENST00000360718 PRO2289Q9P1D8 64 aa5.42□□□□□ -1.54
SQSTM1-201ENST00000360718 KRTAP10-5P60370 271 aa5.41□□□□□ -1.54
SQSTM1-201ENST00000360718 SSPOA2VEC9 5147 aa5.39□□□□□ -1.55
SQSTM1-201ENST00000360718 SPRR5A0A1B0GTR4 108 aa5.35□□□□□ -1.55
SQSTM1-201ENST00000360718 KRTAP9-2Q9BYQ4 174 aa5.35□□□□□ -1.55
SQSTM1-201ENST00000360718 KRTAP19-6Q3LI70 58 aa5.28□□□□□ -1.56
SQSTM1-201ENST00000360718 LCE3AQ5TA76 89 aa5.23□□□□□ -1.57
SQSTM1-201ENST00000360718 KRTAP10-7P60409 375 aaPredicted RBP5.22□□□□□ -1.57
SQSTM1-201ENST00000360718 FCGBPQ9Y6R7 5405 aaPredicted RBP5.17□□□□□ -1.58
SQSTM1-201ENST00000360718 KRTAP10-12P60413 245 aa5.15□□□□□ -1.58
SQSTM1-201ENST00000360718 KRTAP8-1Q8IUC2 63 aa5.15□□□□□ -1.58
SQSTM1-201ENST00000360718 CRCT1Q9UGL9 99 aa5.12□□□□□ -1.59
SQSTM1-201ENST00000360718 KMT2DO14686 5537 aa5.1□□□□□ -1.59
SQSTM1-201ENST00000360718 KRTAP4-8A0A0G2JLE6 195 aa5.06□□□□□ -1.6
SQSTM1-201ENST00000360718 KRTAP4-8Q9BYQ9 185 aa5.06□□□□□ -1.6
SQSTM1-201ENST00000360718 KRTAP12-3P60328 96 aa5.02□□□□□ -1.61
SQSTM1-201ENST00000360718 INE1O15225 51 aa4.94□□□□□ -1.62
SQSTM1-201ENST00000360718 KRTAP9-6A0A140TA67 174 aa4.93□□□□□ -1.62
SQSTM1-201ENST00000360718 MACF1Q9UPN3 7388 aaKnown RBP4.92□□□□□ -1.62
SQSTM1-201ENST00000360718 KRTAP19-5Q3LI72 72 aa4.88□□□□□ -1.63
SQSTM1-201ENST00000360718 KRTAP19-7Q3SYF9 63 aa4.85□□□□□ -1.63
SQSTM1-201ENST00000360718 SYNE2Q8WXH0 6885 aaKnown RBP4.79□□□□□ -1.64
SQSTM1-201ENST00000360718 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.76□□□□□ -1.65
SQSTM1-201ENST00000360718 MT1EP04732 61 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms