RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 ACYP2P14621 99 aa10.92□□□□□ -0.66
HOXA4-201ENST00000360046 KRTAP19-2Q3LHN2 52 aa10.92□□□□□ -0.66
HOXA4-201ENST00000360046 H1FX-AS1Q4G0G2 97 aa10.92□□□□□ -0.66
HOXA4-201ENST00000360046 BRK1Q8WUW1 75 aa10.88□□□□□ -0.67
HOXA4-201ENST00000360046 PSPHP1O15172 72 aa10.86□□□□□ -0.67
HOXA4-201ENST00000360046 LCE2CQ5TA81 110 aa10.82□□□□□ -0.68
HOXA4-201ENST00000360046 LINC01558Q9Y6Z2 57 aa10.81□□□□□ -0.68
HOXA4-201ENST00000360046 FAT4Q6V0I7 4981 aa10.8□□□□□ -0.68
HOXA4-201ENST00000360046 S4R3F8 94 aa10.8□□□□□ -0.68
HOXA4-201ENST00000360046 Q5VV11 94 aa10.79□□□□□ -0.68
HOXA4-201ENST00000360046 FLGP20930 4061 aaPredicted RBP10.79□□□□□ -0.68
HOXA4-201ENST00000360046 CHKB-CPT1BH3BT56 60 aa10.78□□□□□ -0.68
HOXA4-201ENST00000360046 PRR15LQ9BU68 103 aa10.77□□□□□ -0.69
HOXA4-201ENST00000360046 LCA10Q71F78 164 aa10.75□□□□□ -0.69
HOXA4-201ENST00000360046 MT1HP80294 61 aa10.66□□□□□ -0.7
HOXA4-201ENST00000360046 KRTAP3-3Q9BYR6 98 aa10.64□□□□□ -0.71
HOXA4-201ENST00000360046 M0R2T5 61 aa10.62□□□□□ -0.71
HOXA4-201ENST00000360046 SPTSSBQ8NFR3 76 aa10.61□□□□□ -0.71
HOXA4-201ENST00000360046 LCE2AQ5TA79 106 aaPredicted RBP10.6□□□□□ -0.71
HOXA4-201ENST00000360046 A6NED7 52 aa10.58□□□□□ -0.72
HOXA4-201ENST00000360046 CSAG1Q6PB30 78 aa10.58□□□□□ -0.72
HOXA4-201ENST00000360046 CDC42SE1Q9NRR8 79 aa10.51□□□□□ -0.73
HOXA4-201ENST00000360046 A0A1B0GU69 56 aa10.44□□□□□ -0.74
HOXA4-201ENST00000360046 A8MU10 97 aa10.33□□□□□ -0.76
HOXA4-201ENST00000360046 PMAIP1Q13794 54 aa10.33□□□□□ -0.76
HOXA4-201ENST00000360046 KRTAP10-6P60371 365 aaPredicted RBP10.33□□□□□ -0.76
HOXA4-201ENST00000360046 SEC61GP60059 68 aa10.28□□□□□ -0.76
HOXA4-201ENST00000360046 ADM2Q7Z4H4 148 aa10.28□□□□□ -0.76
HOXA4-201ENST00000360046 H0YAA0 97 aa10.27□□□□□ -0.77
HOXA4-201ENST00000360046 UQCR11O14957 56 aa10.27□□□□□ -0.77
HOXA4-201ENST00000360046 LORP23490 312 aaPredicted RBP10.25□□□□□ -0.77
HOXA4-201ENST00000360046 SPATA8Q6RVD6 105 aa10.24□□□□□ -0.77
HOXA4-201ENST00000360046 KRTAP3-2Q9BYR7 98 aa10.2□□□□□ -0.78
HOXA4-201ENST00000360046 KRTAP9-8Q9BYQ0 159 aa10.19□□□□□ -0.78
HOXA4-201ENST00000360046 A6NN06 94 aa10.17□□□□□ -0.78
HOXA4-201ENST00000360046 P0C880 135 aa10.17□□□□□ -0.78
HOXA4-201ENST00000360046 MIR22HGQ0VDD5 57 aa10.17□□□□□ -0.78
HOXA4-201ENST00000360046 KRTAP9-2Q9BYQ4 174 aa10.17□□□□□ -0.78
HOXA4-201ENST00000360046 MT2AP02795 61 aa10.15□□□□□ -0.78
HOXA4-201ENST00000360046 KRTAP10-10P60014 251 aa10.1□□□□□ -0.79
HOXA4-201ENST00000360046 KTN1-AS1Q86SY8 53 aa10.1□□□□□ -0.79
HOXA4-201ENST00000360046 MT1FP04733 61 aa10.08□□□□□ -0.8
HOXA4-201ENST00000360046 A0A1B0GU33 70 aa10□□□□□ -0.81
HOXA4-201ENST00000360046 LCE2DQ5TA82 110 aaPredicted RBP9.95□□□□□ -0.82
HOXA4-201ENST00000360046 R4GN34 69 aa9.95□□□□□ -0.82
HOXA4-201ENST00000360046 CRIPTQ9P021 101 aa9.94□□□□□ -0.82
HOXA4-201ENST00000360046 M0QZ58 72 aa9.93□□□□□ -0.82
HOXA4-201ENST00000360046 KRTAP13-4Q3LI77 160 aa9.86□□□□□ -0.83
HOXA4-201ENST00000360046 KRTAP9-3Q9BYQ3 159 aa9.84□□□□□ -0.83
HOXA4-201ENST00000360046 FSIP2Q5CZC0 6907 aa9.79□□□□□ -0.84
HOXA4-201ENST00000360046 KRTAP19-1Q8IUB9 90 aa9.79□□□□□ -0.84
HOXA4-201ENST00000360046 SPRR2GQ9BYE4 73 aa9.79□□□□□ -0.84
HOXA4-201ENST00000360046 LINC01554Q52M75 96 aa9.78□□□□□ -0.84
HOXA4-201ENST00000360046 KRTAP9-6A0A140TA67 174 aa9.75□□□□□ -0.85
HOXA4-201ENST00000360046 A0A0D9SG42 100 aa9.71□□□□□ -0.85
HOXA4-201ENST00000360046 K7ERS5 55 aa9.68□□□□□ -0.86
HOXA4-201ENST00000360046 LCE2BO14633 110 aa9.64□□□□□ -0.87
HOXA4-201ENST00000360046 CRCT1Q9UGL9 99 aa9.63□□□□□ -0.87
HOXA4-201ENST00000360046 KRTAP19-8Q3LI54 63 aa9.56□□□□□ -0.88
HOXA4-201ENST00000360046 PRAC1Q96KF2 57 aa9.51□□□□□ -0.89
HOXA4-201ENST00000360046 SPINT4Q6UDR6 99 aa9.51□□□□□ -0.89
HOXA4-201ENST00000360046 USH2AO75445 5202 aa9.5□□□□□ -0.89
HOXA4-201ENST00000360046 MT1BP07438 61 aa9.47□□□□□ -0.89
HOXA4-201ENST00000360046 KRTAP12-1P59990 96 aa9.47□□□□□ -0.89
HOXA4-201ENST00000360046 PLAC4Q8WY50 150 aa9.46□□□□□ -0.89
HOXA4-201ENST00000360046 KRTAP12-2P59991 146 aa9.45□□□□□ -0.9
HOXA4-201ENST00000360046 SSPOA2VEC9 5147 aa9.35□□□□□ -0.91
HOXA4-201ENST00000360046 ROMO1P60602 79 aa9.31□□□□□ -0.92
HOXA4-201ENST00000360046 CAMK2N1Q7Z7J9 78 aa9.31□□□□□ -0.92
HOXA4-201ENST00000360046 KRTAP25-1Q3LHN0 102 aa9.25□□□□□ -0.93
HOXA4-201ENST00000360046 KRTAP19-6Q3LI70 58 aa9.12□□□□□ -0.95
HOXA4-201ENST00000360046 MT1XP80297 61 aa9.11□□□□□ -0.95
HOXA4-201ENST00000360046 FCGBPQ9Y6R7 5405 aaPredicted RBP9.1□□□□□ -0.95
HOXA4-201ENST00000360046 KRTAP10-5P60370 271 aa9.08□□□□□ -0.96
HOXA4-201ENST00000360046 PRO2289Q9P1D8 64 aa9.08□□□□□ -0.96
HOXA4-201ENST00000360046 C10orf95Q9H7T3 257 aa8.98□□□□□ -0.97
HOXA4-201ENST00000360046 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.97□□□□□ -0.97
HOXA4-201ENST00000360046 KRTAP9-7A8MTY7 169 aa8.8□□□□□ -1
HOXA4-201ENST00000360046 TNP1P09430 55 aa8.77□□□□□ -1
HOXA4-201ENST00000360046 MACF1Q9UPN3 7388 aaKnown RBP8.75□□□□□ -1.01
HOXA4-201ENST00000360046 KRTAP10-7P60409 375 aaPredicted RBP8.74□□□□□ -1.01
HOXA4-201ENST00000360046 SYNE2Q8WXH0 6885 aaKnown RBP8.68□□□□□ -1.02
HOXA4-201ENST00000360046 KRTAP10-12P60413 245 aa8.63□□□□□ -1.03
HOXA4-201ENST00000360046 KMT2DO14686 5537 aa8.52□□□□□ -1.04
HOXA4-201ENST00000360046 PP632Q6XCG6 107 aa8.49□□□□□ -1.05
HOXA4-201ENST00000360046 KRTAP4-8A0A0G2JLE6 195 aa8.47□□□□□ -1.05
HOXA4-201ENST00000360046 KRTAP4-8Q9BYQ9 185 aa8.47□□□□□ -1.05
HOXA4-201ENST00000360046 LCE3AQ5TA76 89 aa8.46□□□□□ -1.06
HOXA4-201ENST00000360046 KRTAP6-3Q3LI67 103 aa8.41□□□□□ -1.06
HOXA4-201ENST00000360046 KRTAP23-1A1A580 65 aa8.36□□□□□ -1.07
HOXA4-201ENST00000360046 KRTAP8-1Q8IUC2 63 aa8.35□□□□□ -1.07
HOXA4-201ENST00000360046 KRTAP15-1Q3LI76 137 aa8.34□□□□□ -1.07
HOXA4-201ENST00000360046 KRTAP19-5Q3LI72 72 aa8.19□□□□□ -1.1
HOXA4-201ENST00000360046 MUC12Q9UKN1 5478 aa8.18□□□□□ -1.1
HOXA4-201ENST00000360046 H3BS24 57 aa8.15□□□□□ -1.1
HOXA4-201ENST00000360046 SPRR2FQ96RM1 72 aa8.13□□□□□ -1.11
HOXA4-201ENST00000360046 KRTAP12-3P60328 96 aa8.12□□□□□ -1.11
HOXA4-201ENST00000360046 KRTAP19-7Q3SYF9 63 aa8.12□□□□□ -1.11
HOXA4-201ENST00000360046 KRTAP5-9P26371 169 aa8.11□□□□□ -1.11
HOXA4-201ENST00000360046 NEBP20929 6669 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms