RNA–Protein interactions for RNA: ENST00000357348.9

RTFDC1-202, Transcript of Protein RTF2 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTFDC1, Length 2,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-202ENST00000357348 SPINK1P00995 79 aa7.05□□□□□ -1.28
RTFDC1-202ENST00000357348 PRAC1Q96KF2 57 aa7.04□□□□□ -1.28
RTFDC1-202ENST00000357348 IGKV2D-30A0A075B6S6 120 aa7.03□□□□□ -1.28
RTFDC1-202ENST00000357348 MT1HL1P0DM35 61 aa7.03□□□□□ -1.28
RTFDC1-202ENST00000357348 ADM2Q7Z4H4 148 aa7.02□□□□□ -1.29
RTFDC1-202ENST00000357348 J3QL48 77 aa6.95□□□□□ -1.3
RTFDC1-202ENST00000357348 LINC01554Q52M75 96 aa6.95□□□□□ -1.3
RTFDC1-202ENST00000357348 RPS29P62273 56 aaKnown RBP6.94□□□□□ -1.3
RTFDC1-202ENST00000357348 C9orf92A6NGG3 77 aa6.87□□□□□ -1.31
RTFDC1-202ENST00000357348 HERC1Q15751 4861 aa6.83□□□□□ -1.32
RTFDC1-202ENST00000357348 CSAG1Q6PB30 78 aa6.83□□□□□ -1.32
RTFDC1-202ENST00000357348 LPAP08519 4548 aa6.81□□□□□ -1.32
RTFDC1-202ENST00000357348 H0YAA0 97 aa6.79□□□□□ -1.32
RTFDC1-202ENST00000357348 A8MUU9 505 aa6.78□□□□□ -1.32
RTFDC1-202ENST00000357348 C20orf166-AS1Q96NR2 134 aa6.75□□□□□ -1.33
RTFDC1-202ENST00000357348 KRTAP3-1Q9BYR8 98 aa6.74□□□□□ -1.33
RTFDC1-202ENST00000357348 A0A1B0GU33 70 aa6.71□□□□□ -1.34
RTFDC1-202ENST00000357348 LRP2P98164 4655 aa6.7□□□□□ -1.34
RTFDC1-202ENST00000357348 H1FX-AS1Q4G0G2 97 aa6.7□□□□□ -1.34
RTFDC1-202ENST00000357348 KRTAP25-1Q3LHN0 102 aa6.68□□□□□ -1.34
RTFDC1-202ENST00000357348 XP32Q5T750 250 aa6.66□□□□□ -1.34
RTFDC1-202ENST00000357348 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
RTFDC1-202ENST00000357348 HMCN2Q8NDA2 5059 aa6.64□□□□□ -1.35
RTFDC1-202ENST00000357348 COX6B2Q6YFQ2 88 aa6.58□□□□□ -1.36
RTFDC1-202ENST00000357348 H3BS24 57 aa6.57□□□□□ -1.36
RTFDC1-202ENST00000357348 RPL37P61927 97 aaKnown RBP6.57□□□□□ -1.36
RTFDC1-202ENST00000357348 K7ERS5 55 aa6.53□□□□□ -1.36
RTFDC1-202ENST00000357348 ROMO1P60602 79 aa6.52□□□□□ -1.37
RTFDC1-202ENST00000357348 MUC2Q02817 5179 aa6.49□□□□□ -1.37
RTFDC1-202ENST00000357348 UBR4Q5T4S7 5183 aa6.47□□□□□ -1.37
RTFDC1-202ENST00000357348 KRTAP10-6P60371 365 aaPredicted RBP6.47□□□□□ -1.37
RTFDC1-202ENST00000357348 LCE2BO14633 110 aa6.46□□□□□ -1.37
RTFDC1-202ENST00000357348 SEC61BP60468 96 aaKnown RBP6.42□□□□□ -1.38
RTFDC1-202ENST00000357348 RNF213Q63HN8 5207 aa6.41□□□□□ -1.38
RTFDC1-202ENST00000357348 KRTAP13-4Q3LI77 160 aa6.4□□□□□ -1.39
RTFDC1-202ENST00000357348 CRIPTQ9P021 101 aa6.39□□□□□ -1.39
RTFDC1-202ENST00000357348 KRTAP4-1Q9BYQ7 146 aa6.38□□□□□ -1.39
RTFDC1-202ENST00000357348 MUC17Q685J3 4493 aa6.37□□□□□ -1.39
RTFDC1-202ENST00000357348 P0C880 135 aa6.33□□□□□ -1.4
RTFDC1-202ENST00000357348 A0A0A0MQY5 61 aa6.3□□□□□ -1.4
RTFDC1-202ENST00000357348 S4R3F8 94 aa6.3□□□□□ -1.4
RTFDC1-202ENST00000357348 A0A0D9SG42 100 aa6.27□□□□□ -1.4
RTFDC1-202ENST00000357348 KRTAP12-2P59991 146 aa6.2□□□□□ -1.42
RTFDC1-202ENST00000357348 FAT4Q6V0I7 4981 aa6.2□□□□□ -1.42
RTFDC1-202ENST00000357348 C10orf95Q9H7T3 257 aa6.18□□□□□ -1.42
RTFDC1-202ENST00000357348 KRTAP12-1P59990 96 aa6.17□□□□□ -1.42
RTFDC1-202ENST00000357348 SPINT4Q6UDR6 99 aa6.17□□□□□ -1.42
RTFDC1-202ENST00000357348 KRTAP15-1Q3LI76 137 aa6.16□□□□□ -1.42
RTFDC1-202ENST00000357348 KRTAP19-2Q3LHN2 52 aa6.11□□□□□ -1.43
RTFDC1-202ENST00000357348 M0QZ58 72 aa6.1□□□□□ -1.43
RTFDC1-202ENST00000357348 LCE2AQ5TA79 106 aaPredicted RBP6.09□□□□□ -1.44
RTFDC1-202ENST00000357348 LCE2CQ5TA81 110 aa6.05□□□□□ -1.44
RTFDC1-202ENST00000357348 FLGP20930 4061 aaPredicted RBP6.03□□□□□ -1.44
RTFDC1-202ENST00000357348 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
RTFDC1-202ENST00000357348 M0R2T5 61 aa5.95□□□□□ -1.46
RTFDC1-202ENST00000357348 MT1HP80294 61 aa5.95□□□□□ -1.46
RTFDC1-202ENST00000357348 LORP23490 312 aaPredicted RBP5.87□□□□□ -1.47
RTFDC1-202ENST00000357348 R4GN34 69 aa5.83□□□□□ -1.48
RTFDC1-202ENST00000357348 PLAC4Q8WY50 150 aa5.74□□□□□ -1.49
RTFDC1-202ENST00000357348 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
RTFDC1-202ENST00000357348 MT2AP02795 61 aa5.68□□□□□ -1.5
RTFDC1-202ENST00000357348 PP632Q6XCG6 107 aa5.68□□□□□ -1.5
RTFDC1-202ENST00000357348 MT1FP04733 61 aa5.66□□□□□ -1.5
RTFDC1-202ENST00000357348 KRTAP10-10P60014 251 aa5.66□□□□□ -1.5
RTFDC1-202ENST00000357348 CAMK2N1Q7Z7J9 78 aa5.53□□□□□ -1.52
RTFDC1-202ENST00000357348 KRTAP23-1A1A580 65 aa5.51□□□□□ -1.53
RTFDC1-202ENST00000357348 KRTAP19-1Q8IUB9 90 aa5.5□□□□□ -1.53
RTFDC1-202ENST00000357348 LUZP6Q538Z0 58 aa5.49□□□□□ -1.53
RTFDC1-202ENST00000357348 KRTAP9-3Q9BYQ3 159 aa5.48□□□□□ -1.53
RTFDC1-202ENST00000357348 SPRR2GQ9BYE4 73 aa5.46□□□□□ -1.54
RTFDC1-202ENST00000357348 USH2AO75445 5202 aa5.45□□□□□ -1.54
RTFDC1-202ENST00000357348 SPRR5A0A1B0GTR4 108 aa5.43□□□□□ -1.54
RTFDC1-202ENST00000357348 FSIP2Q5CZC0 6907 aa5.42□□□□□ -1.54
RTFDC1-202ENST00000357348 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
RTFDC1-202ENST00000357348 KRTAP4-6Q9BYQ5 205 aa5.42□□□□□ -1.54
RTFDC1-202ENST00000357348 TNP1P09430 55 aa5.41□□□□□ -1.54
RTFDC1-202ENST00000357348 MT1BP07438 61 aa5.31□□□□□ -1.56
RTFDC1-202ENST00000357348 KRTAP19-8Q3LI54 63 aa5.31□□□□□ -1.56
RTFDC1-202ENST00000357348 SSPOA2VEC9 5147 aa5.23□□□□□ -1.57
RTFDC1-202ENST00000357348 KRTAP9-2Q9BYQ4 174 aa5.18□□□□□ -1.58
RTFDC1-202ENST00000357348 MT1XP80297 61 aa5.12□□□□□ -1.59
RTFDC1-202ENST00000357348 KRTAP10-5P60370 271 aa5.11□□□□□ -1.59
RTFDC1-202ENST00000357348 LCE3AQ5TA76 89 aa5.1□□□□□ -1.59
RTFDC1-202ENST00000357348 KRTAP8-1Q8IUC2 63 aa5.05□□□□□ -1.6
RTFDC1-202ENST00000357348 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
RTFDC1-202ENST00000357348 KRTAP19-6Q3LI70 58 aa5.02□□□□□ -1.61
RTFDC1-202ENST00000357348 KRTAP4-8Q9BYQ9 185 aa5.01□□□□□ -1.61
RTFDC1-202ENST00000357348 FCGBPQ9Y6R7 5405 aaPredicted RBP5.01□□□□□ -1.61
RTFDC1-202ENST00000357348 KMT2DO14686 5537 aa4.99□□□□□ -1.61
RTFDC1-202ENST00000357348 CRCT1Q9UGL9 99 aa4.96□□□□□ -1.62
RTFDC1-202ENST00000357348 KRTAP10-7P60409 375 aaPredicted RBP4.96□□□□□ -1.62
RTFDC1-202ENST00000357348 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.92□□□□□ -1.62
RTFDC1-202ENST00000357348 INE1O15225 51 aa4.91□□□□□ -1.62
RTFDC1-202ENST00000357348 KRTAP9-6A0A140TA67 174 aa4.9□□□□□ -1.63
RTFDC1-202ENST00000357348 KRTAP12-3P60328 96 aa4.85□□□□□ -1.63
RTFDC1-202ENST00000357348 KRTAP10-12P60413 245 aa4.85□□□□□ -1.63
RTFDC1-202ENST00000357348 KRTAP4-12Q9BQ66 201 aa4.84□□□□□ -1.64
RTFDC1-202ENST00000357348 KRTAP4-8A0A0G2JLE6 195 aa4.83□□□□□ -1.64
RTFDC1-202ENST00000357348 MACF1Q9UPN3 7388 aaKnown RBP4.83□□□□□ -1.64
RTFDC1-202ENST00000357348 SYNE2Q8WXH0 6885 aaKnown RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms