RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 LCE2DQ5TA82 110 aaPredicted RBP10.47□□□□□ -0.73
SHMT1-203ENST00000354098 CSAG1Q6PB30 78 aa10.47□□□□□ -0.73
SHMT1-203ENST00000354098 DMAC1Q96GE9 116 aa10.47□□□□□ -0.73
SHMT1-203ENST00000354098 KRTAP10-10P60014 251 aa10.45□□□□□ -0.74
SHMT1-203ENST00000354098 ANAPC13Q9BS18 74 aa10.39□□□□□ -0.75
SHMT1-203ENST00000354098 NDUFC1O43677 76 aa10.38□□□□□ -0.75
SHMT1-203ENST00000354098 KRTAP9-3Q9BYQ3 159 aa10.31□□□□□ -0.76
SHMT1-203ENST00000354098 ACYP2P14621 99 aa10.31□□□□□ -0.76
SHMT1-203ENST00000354098 SPANXA2-OT1Q8N9U9 137 aa10.31□□□□□ -0.76
SHMT1-203ENST00000354098 CYSTM1Q9H1C7 97 aa10.31□□□□□ -0.76
SHMT1-203ENST00000354098 H7BZZ5 65 aa10.22□□□□□ -0.77
SHMT1-203ENST00000354098 CCDC179H3BU77 68 aa10.21□□□□□ -0.78
SHMT1-203ENST00000354098 LCE2BO14633 110 aa10.17□□□□□ -0.78
SHMT1-203ENST00000354098 FSIP2Q5CZC0 6907 aa10.16□□□□□ -0.78
SHMT1-203ENST00000354098 H0YAA0 97 aa10.13□□□□□ -0.79
SHMT1-203ENST00000354098 CHKB-CPT1BH3BT56 60 aa10.12□□□□□ -0.79
SHMT1-203ENST00000354098 ADM2Q7Z4H4 148 aa10.09□□□□□ -0.79
SHMT1-203ENST00000354098 USH2AO75445 5202 aa10.05□□□□□ -0.8
SHMT1-203ENST00000354098 KRTAP19-1Q8IUB9 90 aa10.04□□□□□ -0.8
SHMT1-203ENST00000354098 SPTSSBQ8NFR3 76 aa10.04□□□□□ -0.8
SHMT1-203ENST00000354098 COA5Q86WW8 74 aa10.02□□□□□ -0.8
SHMT1-203ENST00000354098 CRCT1Q9UGL9 99 aa10□□□□□ -0.81
SHMT1-203ENST00000354098 SPRR2GQ9BYE4 73 aa9.96□□□□□ -0.81
SHMT1-203ENST00000354098 KRTAP3-2Q9BYR7 98 aa9.96□□□□□ -0.81
SHMT1-203ENST00000354098 P0C880 135 aa9.96□□□□□ -0.82
SHMT1-203ENST00000354098 KRTAP9-6A0A140TA67 174 aa9.95□□□□□ -0.82
SHMT1-203ENST00000354098 CRIPTQ9P021 101 aa9.94□□□□□ -0.82
SHMT1-203ENST00000354098 SSPOA2VEC9 5147 aa9.85□□□□□ -0.83
SHMT1-203ENST00000354098 ATP5EP56381 51 aaPredicted RBP9.81□□□□□ -0.84
SHMT1-203ENST00000354098 KRTAP19-8Q3LI54 63 aa9.81□□□□□ -0.84
SHMT1-203ENST00000354098 TMEM258P61165 79 aa9.79□□□□□ -0.84
SHMT1-203ENST00000354098 MT1BP07438 61 aa9.77□□□□□ -0.84
SHMT1-203ENST00000354098 R4GN34 69 aa9.77□□□□□ -0.84
SHMT1-203ENST00000354098 Q5VV11 94 aa9.76□□□□□ -0.85
SHMT1-203ENST00000354098 M0QZ58 72 aa9.73□□□□□ -0.85
SHMT1-203ENST00000354098 KRTAP19-6Q3LI70 58 aa9.67□□□□□ -0.86
SHMT1-203ENST00000354098 SEC61GP60059 68 aa9.61□□□□□ -0.87
SHMT1-203ENST00000354098 LINC01554Q52M75 96 aa9.58□□□□□ -0.88
SHMT1-203ENST00000354098 SERP1Q9Y6X1 66 aa9.58□□□□□ -0.88
SHMT1-203ENST00000354098 FCGBPQ9Y6R7 5405 aaPredicted RBP9.56□□□□□ -0.88
SHMT1-203ENST00000354098 KRTAP13-4Q3LI77 160 aa9.53□□□□□ -0.88
SHMT1-203ENST00000354098 A0A1B0GU69 56 aa9.48□□□□□ -0.89
SHMT1-203ENST00000354098 RPS28P62857 69 aaKnown RBP9.46□□□□□ -0.89
SHMT1-203ENST00000354098 PLAC4Q8WY50 150 aa9.45□□□□□ -0.9
SHMT1-203ENST00000354098 A0A1B0GU33 70 aa9.43□□□□□ -0.9
SHMT1-203ENST00000354098 A6NN06 94 aa9.43□□□□□ -0.9
SHMT1-203ENST00000354098 KRTAP10-5P60370 271 aa9.42□□□□□ -0.9
SHMT1-203ENST00000354098 LINC01558Q9Y6Z2 57 aa9.39□□□□□ -0.91
SHMT1-203ENST00000354098 SPATA8Q6RVD6 105 aa9.38□□□□□ -0.91
SHMT1-203ENST00000354098 PRR15LQ9BU68 103 aa9.31□□□□□ -0.92
SHMT1-203ENST00000354098 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.29□□□□□ -0.92
SHMT1-203ENST00000354098 MT1XP80297 61 aa9.29□□□□□ -0.92
SHMT1-203ENST00000354098 A0A0D9SG42 100 aa9.28□□□□□ -0.92
SHMT1-203ENST00000354098 PRO2289Q9P1D8 64 aa9.22□□□□□ -0.93
SHMT1-203ENST00000354098 MACF1Q9UPN3 7388 aaKnown RBP9.2□□□□□ -0.94
SHMT1-203ENST00000354098 SMIM26A0A096LP01 95 aa9.15□□□□□ -0.94
SHMT1-203ENST00000354098 A8MU10 97 aa9.14□□□□□ -0.95
SHMT1-203ENST00000354098 Q1T7F1 81 aa9.13□□□□□ -0.95
SHMT1-203ENST00000354098 V9GYY9 64 aa9.12□□□□□ -0.95
SHMT1-203ENST00000354098 SPINT4Q6UDR6 99 aa9.1□□□□□ -0.95
SHMT1-203ENST00000354098 KRTAP12-1P59990 96 aa9.09□□□□□ -0.95
SHMT1-203ENST00000354098 PSPHP1O15172 72 aa9.07□□□□□ -0.96
SHMT1-203ENST00000354098 SYNE2Q8WXH0 6885 aaKnown RBP9.06□□□□□ -0.96
SHMT1-203ENST00000354098 CAMK2N1Q7Z7J9 78 aa9.06□□□□□ -0.96
SHMT1-203ENST00000354098 UQCR11O14957 56 aa9.05□□□□□ -0.96
SHMT1-203ENST00000354098 KRTAP12-2P59991 146 aa9.05□□□□□ -0.96
SHMT1-203ENST00000354098 KRTAP9-7A8MTY7 169 aa9.01□□□□□ -0.97
SHMT1-203ENST00000354098 MIR22HGQ0VDD5 57 aa8.91□□□□□ -0.98
SHMT1-203ENST00000354098 KRTAP10-7P60409 375 aaPredicted RBP8.9□□□□□ -0.98
SHMT1-203ENST00000354098 KRTAP6-3Q3LI67 103 aa8.84□□□□□ -0.99
SHMT1-203ENST00000354098 KMT2DO14686 5537 aa8.83□□□□□ -1
SHMT1-203ENST00000354098 KRTAP10-12P60413 245 aa8.81□□□□□ -1
SHMT1-203ENST00000354098 KRTAP4-8A0A0G2JLE6 195 aa8.76□□□□□ -1.01
SHMT1-203ENST00000354098 A6NED7 52 aa8.76□□□□□ -1.01
SHMT1-203ENST00000354098 KRTAP4-8Q9BYQ9 185 aa8.76□□□□□ -1.01
SHMT1-203ENST00000354098 KRTAP8-1Q8IUC2 63 aa8.68□□□□□ -1.02
SHMT1-203ENST00000354098 KRTAP5-9P26371 169 aa8.66□□□□□ -1.02
SHMT1-203ENST00000354098 C10orf95Q9H7T3 257 aa8.66□□□□□ -1.02
SHMT1-203ENST00000354098 SVIPQ8NHG7 77 aa8.63□□□□□ -1.03
SHMT1-203ENST00000354098 BRK1Q8WUW1 75 aa8.6□□□□□ -1.03
SHMT1-203ENST00000354098 PRO0628Q9UI54 55 aa8.6□□□□□ -1.03
SHMT1-203ENST00000354098 K7ERS5 55 aa8.58□□□□□ -1.04
SHMT1-203ENST00000354098 SPRR2FQ96RM1 72 aa8.55□□□□□ -1.04
SHMT1-203ENST00000354098 MUC12Q9UKN1 5478 aa8.51□□□□□ -1.05
SHMT1-203ENST00000354098 TNP1P09430 55 aa8.48□□□□□ -1.05
SHMT1-203ENST00000354098 CDC42SE1Q9NRR8 79 aa8.48□□□□□ -1.05
SHMT1-203ENST00000354098 NEBP20929 6669 aa8.38□□□□□ -1.07
SHMT1-203ENST00000354098 MDN1Q9NU22 5596 aa8.36□□□□□ -1.07
SHMT1-203ENST00000354098 LCE3AQ5TA76 89 aa8.31□□□□□ -1.08
SHMT1-203ENST00000354098 KRTAP19-7Q3SYF9 63 aa8.3□□□□□ -1.08
SHMT1-203ENST00000354098 SPRR2EP22531 72 aa8.29□□□□□ -1.08
SHMT1-203ENST00000354098 SPRR2BP35325 72 aa8.29□□□□□ -1.08
SHMT1-203ENST00000354098 SPRR2AP35326 72 aa8.29□□□□□ -1.08
SHMT1-203ENST00000354098 LCE1AQ5T7P2 110 aa8.27□□□□□ -1.09
SHMT1-203ENST00000354098 KRTAP25-1Q3LHN0 102 aa8.25□□□□□ -1.09
SHMT1-203ENST00000354098 KRTAP19-5Q3LI72 72 aa8.24□□□□□ -1.09
SHMT1-203ENST00000354098 MT1EP04732 61 aa8.19□□□□□ -1.1
SHMT1-203ENST00000354098 ROMO1P60602 79 aa8.14□□□□□ -1.11
SHMT1-203ENST00000354098 PMAIP1Q13794 54 aa8.14□□□□□ -1.11
SHMT1-203ENST00000354098 SPRR2DP22532 72 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms